Hippoglossus hippoglossus (Atlantic halibut): 117761547
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Entry
117761547 CDS
T07778
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117761547 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117761547 (smarcc2)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117761547 (smarcc2)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117761547 (smarcc2)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117761547 (smarcc2)
PBAF complex
117761547 (smarcc2)
GBAF(ncBAF) complex
117761547 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
117761547
NCBI-ProteinID:
XP_034441431
LinkDB
All DBs
Position
5:complement(16008682..16019547)
Genome browser
AA seq
1076 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSADIEPKLLGKLKDIIKRHQGSVTEDKASSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEVEAALEDPPSPEKPRKVHAK
WILDLDQYNEWMTEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNAAKTN
NTKKDSDSTPVKGGTDMDEQEDESMETTGKEEEEGSPGVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTTQTPATQPMMSFPDKVKEKPADLQNFGLRTDMYSKKSGSVKSKSTASSMREWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSPSTLGPLAFQPV
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPGMMDTYTPIHTYNIDTTCDPTSLSTPDENTDEN
KNDTQSSEEKREPKDSKDGAIEEEEKQAENGKKEEERGREPEGEREADKTESDMGDGEKE
KEGKEGTEEGQREGESEIERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIK
SLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMR
ARQQHFQQIQHQQHSQAGGPHSTQPASGVQPQAVAASQQAPSTPAPQPAASPAPPTSSAP
APESQPPQSAHTSPPRPPSQAPASHSSSSTTPVLHEPTTPLSGETLHPAAPVPPPQ
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgacacc
gtctctcagtttgataatgtccgcgtctggctggggaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtcgctgtccagcctggtggtccagctgctccagttccag
gaggaggtgtttgggcgacatgtcagcaaccctccactcaccaaactgcctatgaagtgt
ttcctggacttcaagtcagggggggctctctgccacattctggctgctgcctacaagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcaaggatggaccgaaat
gtggagatgttcatgaccattgagaagtcgttggtgcagaacaactgcctgactcgacct
gtcatctacctgagtgcggacatagaaccaaaactgctcgggaaactgaaagacatcatc
aaaagacatcagggctcggtgactgaggacaaggcctccagctcccatgttgttgtgcct
attccgaccagtctggaggaagaggagtgggtgcgtcccgtgatgaagagagataaacaa
gtgctgcttcactggggatattttcctgacagttacgacacctggatcccagccagtgag
gtcgaggcagcgttggaggatcctccaagcccagagaaacccaggaaggtccatgccaag
tggattttggacctggaccagtataacgagtggatgactgaagaggactatgaagtgggc
gagggctgccccaagaggaagaggatctctgccaagaccctgacggatgaggtgaccaca
cccgacgagcggcgggacaagaagcccagcagtgccaagaagaggaagcgttcgccgtcg
ccctcccccacccctccacctcaggagagcaagaagaagaacactaagaaaggaccaaca
accccgtacaccaagtctaaacgtggccagagggaggaagaacaggaagacttgagtaag
gacttagatgaagcatcacctgttccagcatctgaagagggaaacgcagctaagacaaat
aacactaagaaagattctgattcaactcctgtcaagggaggaacggatatggacgagcaa
gaggatgagtccatggaaacaacagggaaggaagaggaggaaggctccccgggtgtcaag
ggagaaccggtaaaaggctctgaccttcatgaggacaacgtgactgagcaaacccaccac
atcatcatcccgagctacgctgcctggtttgactacaacagtgttcacgccatcgagcgc
agagccctgccagagtttttcaatggaaagaacaaatccaaaacccctgagatttatctg
gcgtacaggaacttcatgatcgacacctatcgactgaatcctcaggagtacctcacctcc
accgcctgccgcaggaacttggcaggagatgtttgtgcaatcatgagagttcacgccttc
ctggagcaatggggtctgatcaactaccaggtggactcagagagccggcccacacccatg
ggtcctccacccacctctcacttccatgtcctggcagacacaccatccagtctggttccc
ctgcagcctaagaccacacagactcctgctacccagccaatgatgtcattcccagataaa
gtgaaagaaaaaccagcagatctgcaaaactttgggctacggactgacatgtacagcaag
aagagtggctctgtaaagagcaagagtacagcaagctccatgagggagtggacagagcaa
gaaacactactactacttgagggtttggaaatgtacaaggacgactggaacaaagtgtca
gaacacgtgggcagccgtacacaggatgagtgtatcctgcactttctgcggctgccaatt
gaagacccctacttggaggacagcccctcgactctgggaccactcgcctttcagccggta
cctttcagccaggcaggaaaccccgtcatgagcacagtggccttcctcgcctctgtcgtt
gacccacgtgtggcctcggctgcagctaaatctgcgctggaggagttttctcgtatgaaa
gaggaagttcctgcagctctggtcgaagctcacgtgcgacgagtggaggaggcagcgaga
gtcagtggccgccaggaccccctgtacggcctggaaggaagtgggattgcaggaactggc
ctggaggagggagaaagaccgggtatgatggacacatacacacccattcacacgtacaac
atagatacaacttgtgacccgacgtctctctcgaccccagatgaaaacactgatgaaaac
aagaacgacacccaatcaagtgaagagaagagagagcccaaggacagcaaagatggtgcg
attgaagaagaggaaaaacaggcagaaaatgggaagaaggaagaagagagaggaagagaa
cctgaaggagagagggaggccgacaaaacagaatcagatatgggtgacggagagaaggag
aaagagggaaaagagggaacagaggaaggacaaagagaaggagagagtgagatagagagg
aaggccaaggtagagcgtgatgttggagaggggaacctggccactgctgctgcatctgct
ctcgctgcagctgctgtcaaagccaagcacctggctgcagtggaagagaggaagatcaag
tctctcgtggctttgttggtggaaactcagatgaagaagctggagataaaactgcgacac
tttgaagaactggaaaccatcatggacagagagagggaggctctggagtaccagcggcag
cagctcctcgccgaccgtcagtctttccacatggagcagttgaaatacgctgagatgaga
gctcgccagcagcacttccagcagattcagcaccagcagcacagccaggccgggggccct
cattccactcagccggcctcaggcgtgcagcctcaggccgtggcagcaagtcagcaagct
cccagcacaccagcaccgcagccggccgccagccccgcacctccaacgtcttctgcccca
gctccagagtcccaaccgcctcagagtgctcacacctcgcccccacgtcccccaagccag
gccccggcttcccactccagctccagcactacacctgtacttcatgagcccaccaccccc
ctctccggggaaacactccaccctgcagctccagtccctccaccacagtga
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integrated database retrieval system
