Hippoglossus hippoglossus (Atlantic halibut): 117761890
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Entry
117761890 CDS
T07778
Symbol
scn8ab
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit b isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117761890 (scn8ab)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117761890 (scn8ab)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117761890 (scn8ab)
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Ortholog
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
ATP-synt_B
FraC
IQ
HpsJ
TMEM51
Motif
Other DBs
NCBI-GeneID:
117761890
NCBI-ProteinID:
XP_034442098
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Position
5:16195314..16239350
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AA seq
1981 aa
AA seq
DB search
MAAPLMAPPGPDSFKKFTPESLANIEKRINEEKNKKPPKPRSDSSHRDTSDENEPKPNRD
LEAGKSVPFIYGDVPNGMFSTPLQDLDPYYLNKKTFIVINKGKTIFRFSATPSVYILNPF
NLLRRIAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLTKIV
ARGFCIDGFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLK
TIVGALVQSVKKLSDVMILTVFCLGVFALIGLQLFMGNLRNKCVNWPINMTEQYLPNGSR
GFDWGTYVMDKKNFYFLHGQIDALICGNSSDSGNCPEGFTCMKAGVNPNYGYTSFDSFGW
AFLTLFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQN
QATIEEAEQKEAEFKAMLEQLKRQQEETQAAAMATSAGTVSEAALEDEGGGHLSRSSSEV
SKLSSKSAKERRNRKKKWRQKEQDKEKGDSEKVVKSESDDGSKKSTIRFPGSRLGRKTSI
MNQSLLSIPGSPFMSRHNSRSSIFSFKGRSKDMGSENEFADDEHSTVEESEDRRGSLFIP
YRRNSYSGYSQGSSRIHPLAPHSGGKRNSTVDCNGVVSLIGPGPGRRLLPEVKIDKAATD
DSTTDVEIKKKQSGSLMVSVDQLNSSFKGKDRANSQMSVVTNTLLEELEESQRKCPPCWY
KFANVFLIWECFPMWLKIKHIVYLIVMDPFVDLAITICIVLNTLFMAMEHYPMTEQFEGV
LSVGNLVFTGIFAGEMFAKLVAMDPYYYFQEGWNCFDGFIVTLSLVELGLADVEGLSVLR
SFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDC
VCKIAEDCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLTVFMMVMVIG
NLVVLNLFLALLLSSFSADNLAATDDDGEPNNLQLAVARIKIGIAWFKVNMRVFVATVLK
KPIEDEQKPLDDMYEKKLNCIANHTVDINRELDYAKNGNGTTSGIGSSVGKYMIDEDFMS
FIHNPNLTVCVPIAVGESDFENLNTEDFSSESDVENSKDDDTSSSEGSTIDIKPDVEEVA
VVEVVEEYLDPDACWTDECVAKYKCCDVPITFGWGKHWWFLRKTCYLIVEHNWFETLIIF
MILLSSGALAFEDVYIEQRKTVKIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCW
LDFFIVDVSIVSLIANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPS
IMNVLLVCLIFWLIFSIMGVNLFAGKYYFCFNDTEEAYFHPNDVNNKSECLALISANNTE
VRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAIDSRKVGDQPLYEDNLYMYIYFVI
FIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPR
PQNKIQGMVFDFVTQQVFDISIMILICLNMVTMMVETDDQSEDTEIVLYWVNFIFIVVFT
TEFVLKLFALRHYYFTNGWNIFDVVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGR
ILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVRHGAGIDDMY
NFETFGNSMIILFMITTSAGWDGLLLPILNYPPDCNPKLENPGTPATGDCGNPSVGIFFF
VMYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDASQFITYS
KLSDFADALEHPLRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLR
QQMEERFVAANPSKVSYEPITTTLRRKQEDMSSRIIQRAYRSYLARRGFICKRKPANNKV
ENGGKNEEQEKKESTPSTASLPSYDSVTKPDKEKQDDDNNEGKGGRKEKGRNQKDIRESK
C
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaccccttatggcacccccaggacctgacagcttcaagaaattcaccccagag
tcgcttgcgaacatcgagaagcgcatcaatgaagagaagaacaagaagccgcccaagccc
agatcagacagtagtcaccgtgacacatctgacgaaaatgagcccaagccaaacagggac
ctggaggctgggaagagcgtgccgttcatctacggtgatgttcctaatggaatgttttcc
acgccgctgcaggatttggacccctactacttgaacaagaaaacatttatagtcataaac
aaagggaaaacaatcttccgcttcagtgccacgccctctgtgtacatcttaaaccctttt
aatctacttaggcgaatagctattaagattttgatacattcgttattcagcatgatcatc
atgtgtacgattttgaccaactgtatattcatgacatttagtgatcctccggagtggtct
aaacaagtagagtataccttcacggggatctatacgtttgagtcactcacaaaaattgtg
gcccgaggcttctgtatagatgggttcacctttctccgagacccatggaactggctggat
ttcatggtcatctcaatggcatatgtaacagagtttgtggaccttgggaatgtctcggcg
ctgagaacgttcagggttctccgagcattgaaaacaatttctgtcattccaggtctgaag
accattgtgggcgctcttgtccaatctgtgaagaagttgtccgacgtgatgatcctgaca
gtattctgtctcggagtcttcgctttgattggattgcagctgttcatgggtaacctgcga
aacaaatgtgtaaactggccaatcaacatgactgagcagtacctgccaaatggcagcagg
ggctttgactggggcacatacgtcatggataaaaaaaatttctacttcctccacggtcag
attgatgctctaatatgtggaaatagttctgactcaggaaattgcccagagggatttaca
tgtatgaaagccggagtgaaccccaactacggctacaccagctttgacagcttcggatgg
gctttcctcaccctttttcgcctcatgacccaggacttctgggaaaatctttacatgctg
actctgcgagctgcagggaagacctacatgatcttctttgtgcttgtcatcttcgtgggc
tccttctacctggtgaatctcatcttggctgtggtggccatggcttatgaggagcagaac
caggccactattgaggaggcggagcaaaaagaggccgaattcaaggcaatgcttgagcag
ctgaagaggcagcaggaggaaacacaggcggctgccatggcgacatctgcaggcactgtg
tctgaggctgcgttggaggatgaaggaggggggcacttgtcccgcagctcctctgaggtt
tccaagctgagctccaagagcgccaaggaacgtcgcaatcgcaaaaagaaatggcgtcag
aaagagcaagataaagagaagggagacagtgaaaaggttgttaagtctgagtcagatgat
gggagcaagaaaagcaccattcgtttccccggaagccggctggggagaaagacatccatc
atgaaccagtcactactgagcatcccaggctcgccctttatgtcacgccacaacagccgc
agcagcatcttcagcttcaaaggccgttccaaggacatgggctcagagaacgagtttgcg
gatgatgagcatagtacagttgaggagagcgaagaccgtcggggctccctgtttatccct
taccgccgcaacagctatagtggttacagccaaggctcatcgcgcatccacccactggca
ccccactctggagggaagaggaacagcacagtggactgcaatggcgtggtgtctctcata
ggacctgggcccggcagacggcttctgcctgaggtgaaaatagataaggcagccactgat
gacagtactacagacgtggagattaagaagaagcaatctggctctctcatggtctctgtg
gatcagctcaactcctcgttcaaaggaaaggaccgggccaacagtcagatgagcgtggtc
accaacacactattagaggagttggaggagtctcagaggaagtgtcctccctgttggtac
aagttcgccaacgtcttcctcatctgggagtgctttcccatgtggctgaagatcaagcac
attgtctacttgattgtcatggacccatttgtggacctcgccatcaccatctgcattgtc
ctcaataccctcttcatggccatggagcactaccccatgactgaacaatttgagggggtt
ctgtccgttggtaacctggttttcacaggcatttttgctggcgagatgtttgccaaactg
gttgccatggatccctactactactttcaagaaggctggaactgctttgatggcttcatc
gtgactctgagtttagtggagctaggtctggcggatgtggaaggtctgtcagtgctccga
tccttccgattgttacgagtgttcaaattggccaaatcgtggcccaccctcaacatgctc
atcaagatcatcggtaactctgtgggagctctgggtaatctgaccctggtgctggccatc
atcgtcttcatcttcgccgtggtgggcatgcagctctttggaaaaagttacaaggactgt
gtgtgtaagatcgcggaggactgtaagctgcctcgctggcacatgcatgacttcttccac
tccttcctgattgtgttcagagtgttgtgtggcgagtggattgagaccatgtgggactgt
atggaggtggcaggacagaccatgtgtctcactgtcttcatgatggtcatggtcatcgga
aacctggtggtactgaacctgttcctggccttgctgctgagttcattcagtgccgacaac
ctcgccgcaacagatgatgatggggagcccaacaacctccagctcgcagtcgcccgcatt
aagatagggattgcctggttcaaggtcaacatgcgagtctttgtggccacagtgcttaag
aagcctatagaggacgaacagaagcctctggatgatatgtatgaaaagaagctaaactgc
atcgcaaaccacacggtggacatcaaccgtgaactggactatgccaaaaacggcaatggc
accaccagcggcattggaagcagcgtggggaagtatatgattgatgaggacttcatgtcc
ttcatccataaccccaaccttactgtttgtgttcccatcgcggtcggggagtcagacttt
gaaaatctgaatacagaagacttcagcagtgaatcagacgtggagaacagcaaagatgat
gacaccagttcgtctgagggcagcacaatagacatcaagcctgacgtggaggaggtggcg
gtcgtggaggtggtagaggagtaccttgacccggacgcctgctggacagatgaatgtgtg
gccaaatacaagtgctgtgatgtccccatcactttcggctgggggaaacactggtggttc
ctgagaaagacctgctacctgatcgtagaacacaactggttcgaaaccctcatcatcttc
atgatcctgctcagcagcggcgcattggccttcgaggacgtgtacatcgagcagaggaag
acggtcaaaatcattctggagtacgctgatcgtgttttcacctacatcttcattctggag
atgttgctcaaatgggtggcctacggctttgtcaagtacttcactaatgcctggtgttgg
ttggacttcttcattgtggatgtgtctatagtcagccttatagctaatgcgttgggctac
tccgatctaggcccgattaaatcactaaggacactgagggccttgagacccctcagggcc
ctgtcacgttttgaagggatgagggtggtggtgaacgccctggtgggtgcgatcccctct
atcatgaacgtgctgctggtgtgtctcatcttctggctcatctttagcatcatgggcgtc
aacctgttcgctgggaagtattacttctgtttcaatgacacggaagaggcgtacttccac
cccaatgacgttaacaacaaatcggagtgtcttgccctcattagcgcaaacaacacggaa
gtcagatggaaaaacgtcaagatcaatttcgacaatgtgggtgctggatacctggcgctc
ctgcaagtggcaacattcaaaggctggatggacattatgtacgcagcaatagattctaga
aaggtgggggaccagcccctctacgaggacaacttatacatgtacatctactttgtcatc
ttcatcatcttcggctcgttcttcacactgaacctcttcattggtgtcatcattgacaac
ttcaaccagcaaaagaaaaagtttggaggtcaggatatattcatgacagaagagcagaag
aaatactacaatgccatgaagaaactagggtcaaagaaaccacagaaaccgatacctagg
cctcagaacaaaatacagggcatggtgtttgactttgtgacgcagcaagtgtttgacatc
tccatcatgatcctcatctgcctcaacatggtcaccatgatggtagagacggacgatcag
tccgaggacactgagatcgtgctctactgggtcaacttcatcttcattgtggtcttcaca
accgagtttgtactcaagctctttgcactgcgtcactactacttcaccaatggctggaac
atctttgacgtggttgtggtcatcctttcaattgtgggaatgtttctggccgacataatc
gagaagtactttgtttcgccgacactgttcagagtgattcgtctggctcgtattggcaga
atcctgcgtcttatcaagggcgccaaaggcatcagaactcttctgtttgccctcatgatg
tctctcccggccttgttcaacattggcctgctactcttcctggttatgtttatcttctct
atctttggcatgtccaactttggttatgtaaggcacggagctggaatcgatgacatgtac
aacttcgagacgttcgggaacagcatgatcatcctgtttatgatcaccacatcagctggc
tgggacggcttgctgctgcccattctgaactaccctccggactgcaaccctaaattagag
aatcctggtactcccgccacaggagactgtgggaacccatctgtgggcatcttcttcttt
gttatgtacattatcatttctttcctaattgtggtcaacatgtacatcgccatcatcctg
gagaacttcagtgtagccacagaggagagtgccgacccactcagtgaagacgactttgag
accttttatgagatttgggagaagttcgaccccgatgcctctcagttcatcacctattcc
aagctttctgactttgccgatgcacttgaacatcctttgcgagtccccaagcccaacacc
attgaactgatcgccatggacatgccgatggtgagcggcgaccgcatccactgcctggac
atcctgttcgccttcaccaagcgtgtgctgggtgacagtggcgagctggacatgttacga
cagcaaatggaggagcggtttgtggcagccaatccctccaaggtctcttacgagcccatc
accaccactctgaggcgcaagcaggaggacatgtcctccagaatcattcaaagagcctac
cgctcctacctggccaggcggggctttatctgcaagcgcaaaccagccaataacaaagta
gagaatggcggaaagaatgaagaacaggaaaaaaaggaaagcaccccttccactgcctcc
ctgccctcctatgatagtgtaaccaaacctgacaaagaaaaacaggatgacgacaacaac
gagggcaagggagggaggaaagagaagggaagaaaccaaaaagacatcagggaatctaaa
tgttaa
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