Hippoglossus hippoglossus (Atlantic halibut): 117761935
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Entry
117761935 CDS
T07778
Symbol
pbrm1l
Name
(RefSeq) polybromo 1, like isoform X1
KO
K11757
protein polybromo-1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117761935 (pbrm1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117761935 (pbrm1l)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117761935 (pbrm1l)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117761935 (pbrm1l)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
117761935 (pbrm1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117761935
NCBI-ProteinID:
XP_034442190
LinkDB
All DBs
Position
5:13269209..13281887
Genome browser
AA seq
1646 aa
AA seq
DB search
MSASSKRRRATSPSSSVSGGGDLDDTSSTPGSGRKRRRISNVPPVDMIAVCHELFNAVRD
HKDEHGRQLCDVFLRVPKRRNLPDYYEVVSQPIDMTKIQYKLKSEDYNDVEQLTADFQLM
FNNAKSFYKRDSEEYQAASKLWQVYLQTRSEFVQPGDGDDDDEDADDMMDNPGMSTEDET
STGSLKEVLEQLLEAIVSHADPSGRLVSELFQKLPSKVHYPDYYAVIKEPIDLRAIAQRI
QIGYYKGVNAMAKDIDLMAKNAKMYNEPGSQVFKDANTIKKVFIQRKTELEHAEPTKSSL
RIRNRRSGQGDRLSGVSVALHYGSESEDDPVLSGSVCYDEGESEAESQSSSMEMSNPIFQ
LYEAVRGARNNQGQVFSEPFQHLPSRREYPDYYQQIKQPVALQQIRAKMKNGEYESVEQM
DTDLNLMFENAKRYNMPNSSIYKRAFRLQQIMQAKRRELLRRDDEDGDSILSSDAGSVKR
KSHKKNVKKNRMKSLYTAVFDAKESGTSRRLSDLFMVKPSKKDYPDYYNVILEPMDMKTI
EHNVRIERYTTEEALMDDMRLMFRNARHYNEEGSQVYNDADILEKILKDKRKELGPSTEE
EDMGSPKLKLRKSGVSPKKSKYLTPLQQRLNELYDAVRNFTDRRGRRLSTIFLRLPSRAE
LPDYYATIKRPIDMERLRSHMAAGRFQDVEALVEDFVLMFNNACIYNEPESLIYRDALLL
HRVLLETRKQQEGGEDSGLPAVGLLVRELIRNLFVSVLGHQDEESRCYSDSLAEIPAVDP
ASPEKPPLNFDVIRMNVDRGRYRRLDVFQEHMFEVLEKARRLHRTDSEIFEDSVELQQFF
IKIRDELCKNGEILLSTALNYTSKHLHSDVEQEKRDKIPKEFEEDKQKKEEEDEENNKDG
EKAGDRHGEPWQSESETERVYTKECTFENLTYHVGDFVYVEQSKPNLKPHIVCIERLWEN
EAGEKWLYGCWFYRPTETFHLATRKFLEKETFKSDYYNKVSLSKVSGNCVVLCVKDYFKM
QPEGYRPEDVYVCESRYAARNKSFKKIKIWAMPTSSVKLVSRDVPMPVVRVASMFAKPNQ
DKLTVSYAESGGFVEKEREDVPVEMNAAEPGGQHYEQLRYNNMWFKVGDCVYIKSHGLSK
PRVARIEKLWVQNGTTYFFGPIFIHPEETEHEPTKMFYKREVFLSQLEETLLMTCVIGKC
MVSPFKDFLSCRSTEVSEDDVLLCESRYIETEKQMKKFKGLKRFSYSAKVVEDEIYYFRK
LMVPQKEASPFLTKKIEELELKLADIEDGDDDIEDMDDEEAPVTPSMPQIPTPHASEMDT
QPYTPSQSTPKVKGLSKKEGAKRKINMSGYILFSSEMRAVIKARHPDFSFGELSRLVGTE
WRNLETTKKAEYEERAAKIVENQERDRPPQKQASPRAGTPVGALMGVVPSPSTMGMINQT
MTPVSGLMGAYGPPYMPMQGPHEGLLSVATMSPHPAGGPHLPLHHLQQGIPGYPGMPHQG
MMGAGMNGMAGSPGSGTFMQQPGMFSPGQLAPPPYPGQGQLGQPSHLQPTTPMFVAPPPK
TQRVLHSEAYLKYIEGLNSESATVSKWDQTLKAQRRDAHLTKEQESRLPAHWLKSKGAHT
TMADALWRLRDLMLRDSLNICQAYNL
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgagctcgaagaggagaagggccacttcaccctccagcagtgtcagcggaggg
ggagacctcgacgatacctcctctactcctggaagtggcaggaagcgaagaaggatctcc
aatgtccctcctgtagatatgatcgctgtttgccacgagttgttcaacgctgtcagggac
cacaaggatgagcatggaaggcaactttgtgacgttttcctgagggttccaaagagaagg
aatctgcctgattattatgaggttgtgtctcagccaattgatatgacaaaaattcagtat
aaactcaagtcagaagattataacgatgtggagcagctgactgcggatttccagctcatg
ttcaacaatgccaaatcattctacaagagggacagtgaggagtatcaagctgcctctaag
ctgtggcaggtttatctccaaacaaggagtgagtttgtgcagcctggagatggagatgat
gatgatgaagatgctgacgacatgatggataatccaggaatgtcaacagaggacgagacc
tcaactggtagtttgaaggaggtgttggagcaactcttggaggctatagtgtcacatgct
gatccctcagggcgtctggtcagtgaactgttccagaaactgccttccaaagtgcattac
ccagactactatgctgttatcaaggagccaatagatttgagagcaatcgctcaaagaata
cagattggatactataaaggtgtcaatgcgatggccaaggacattgacctgatggccaaa
aatgccaaaatgtacaatgaaccaggatctcaggtttttaaggatgcgaacaccataaag
aaggtgttcatccagcggaagaccgaacttgaacatgctgaacccactaaatcgagtctt
cgcatcagaaatcgcaggtctggccagggtgatcgactttctggtgtcagcgtcgctctt
cactatggttcagagagtgaggacgaccctgttctctctggctctgtgtgttatgatgag
ggagagtcggaggctgagagtcagagttctagtatggagatgagtaacccgatcttccag
ctgtatgaagctgtgcggggcgccaggaacaaccagggccaggtcttctctgaacccttc
cagcacttgccatctcgcagggaatatcccgattattatcagcagatcaaacagcccgtc
gctctgcagcagatcagggcaaagatgaagaatggggagtatgaaagtgtggagcagatg
gacactgacctcaatctgatgtttgagaatgcaaagcgctacaacatgcctaactcaagc
atttacaaacgagccttcaggctccagcagatcatgcaggccaagaggagggagctttta
aggagagatgatgaagatggagacagcattttgtcatctgatgccgggagtgtcaagagg
aaaagccacaagaaaaatgtcaagaagaacagaatgaaatccctttacactgcagttttc
gatgccaaggagtcaggcaccagtcggcgtctgagtgacctttttatggttaaaccctcc
aaaaaggactaccctgactactataacgtcatcctcgaacctatggacatgaaaaccatt
gaacacaacgtccgcattgagcgctacaccacagaagaagctctgatggatgacatgagg
ttgatgttccgtaacgccaggcattacaatgaagagggatctcaggtgtataatgatgct
gacattctggagaagatactgaaagacaagcgcaaggagttaggaccttccactgaagaa
gaggacatgggatctccaaaactgaaactaagaaagagtggtgtttctccaaagaagtcc
aaatacctcacacccctccagcagaggttgaatgagctctatgatgctgtgcgaaacttc
actgatcgccgaggtcggcgtctgagcacgatcttcctccgtctgccatctcgtgccgag
ttgcctgactactatgctaccatcaagaggcccatcgacatggagcgcctgcgaagtcat
atggcggctggccgtttccaggatgttgaagccctggttgaggactttgttctcatgttc
aacaacgcctgcatatacaatgagccagagtctctgatctaccgggacgctctgctgttg
caccgggtgctgctggagacacgtaagcagcaggagggaggcgaggactctgggcttccg
gctgtgggacttctggtgagagagctgatcaggaacctgtttgtgtcagtgctgggccac
caggatgaagagagcagatgctacagcgactcgctggctgagattcctgctgtggatcca
gcctctcctgagaagccaccacttaactttgatgtcataaggatgaacgtggaccgaggc
cgctacaggagactggatgttttccaggaacacatgtttgaggtgctggagaaggcacgc
agacttcacaggactgactctgagatatttgaagattcagtggagctgcaacagtttttc
attaaaatccgggatgagctatgcaagaatggagagattctcctgtccactgcgctcaac
tacacgtcaaaacacctgcacagtgacgtggagcaggaaaagagggacaaaattcccaaa
gagtttgaggaagacaagcaaaagaaagaagaagaggacgaggagaataataaagatggt
gagaaagctggagaccggcatggagaaccatggcagtcggagtccgagacagagcgtgtg
tacactaaggaatgcacctttgaaaacctcacctaccacgtaggggactttgtgtatgtg
gagcagtcgaaaccgaacctgaagccacacatcgtctgtattgaacgtctgtgggagaat
gaagcaggtgagaagtggctgtatggttgctggttctacaggcccactgaaaccttccac
ctggccacacgcaagtttctggaaaaagagaccttcaagagcgactactacaacaaagtg
tcactcagcaaagtctcgggcaattgtgtggtcctgtgtgtgaaggattatttcaaaatg
cagccagagggctacaggcccgaggatgtgtatgtctgtgaatcccgctatgctgccagg
aacaagtccttcaagaagatcaagatatgggccatgcctacgagctctgtgaagttggtc
tcacgagacgtgcctatgcccgttgtccgtgtagcctccatgttcgccaagcctaaccag
gacaagctaacagtctcatatgcagagagtggcggttttgtggagaaggagagggaggat
gtccctgtggagatgaatgcagctgagcccggtggtcagcactatgaacagttgcgctac
aacaacatgtggtttaaagtgggagactgtgtttacatcaagtctcacggtctgtcaaag
ccccgggttgccaggatagagaagctgtgggtgcagaatggaactacttacttctttgga
ccgatcttcattcatccagaggaaaccgagcacgagcccacgaagatgttctacaagaga
gaagtttttctgagccaactggaggagactctgctcatgacctgtgtcataggcaaatgt
atggtttcccctttcaaggacttcctgtcatgcagatccaccgaggtttcagaggacgac
gtcctgctgtgcgagagccgctacattgagactgagaagcagatgaaaaagttcaagggt
ctcaaacgcttctcatattctgccaaggtggtggaggacgagatctactatttcagaaaa
ctgatggtgcctcagaaggaagcctcaccctttttgactaagaagatagaggagcttgag
cttaaactggccgacattgaggacggagatgatgatattgaagatatggatgatgaggag
gctccagtaacaccttctatgcctcagataccaacgccacatgcaagcgaaatggacaca
cagccatacacaccttctcagtccactcccaaagtaaagggcttatcgaaaaaggaaggg
gccaagagaaagatcaacatgagtggctatatcctgttcagtagtgaaatgcgagcagtc
atcaaagctcgacaccctgacttctcctttggggagttgagtcgactcgtgggcaccgag
tggaggaacctcgaaactaccaagaaagccgagtatgaagaacgtgcggcgaaaatagtg
gagaaccaagagcgcgacagaccaccccagaagcaagcatcccctagagcaggtacccca
gtaggggcactgatgggggtggtgccttcgcccagcactatgggaatgataaaccagacc
atgacacctgtgtcaggcttgatgggagcttacggcccaccttacatgcccatgcagggc
ccccatgagggcttgttgagtgtggcaacaatgtcacctcaccctgcaggggggccccac
ctgcctcttcaccatctccagcaaggtattcctgggtaccctggcatgcctcatcagggt
atgatgggagctggtatgaatggcatggcaggaagtccgggatcaggaacctttatgcaa
cagcctgggatgttcagcccaggacaactcgctcctcctccatatccagggcagggccag
ttaggccagccctcacacctgcagcccaccacccccatgtttgtggctccaccaccaaag
acccagagggtgctccactcagaggcctacctgaagtacatcgagggcctgaactcagag
tctgccactgtcagcaagtgggaccaaacactgaaagctcaaaggcgagatgctcacctg
accaaagagcaggagagcaggctgccagctcactggttgaagagcaagggagcccacacc
accatggcggatgcactgtggcgcctgcgtgacttgatgctgagagactctctgaacatc
tgtcaggcatacaacctgtaa
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integrated database retrieval system
