Hippoglossus hippoglossus (Atlantic halibut): 117762004
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Entry
117762004 CDS
T07778
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hhip03036
]
117762004 (chd5)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117762004 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
117762004
NCBI-ProteinID:
XP_034442307
LinkDB
All DBs
Position
5:5110003..5147469
Genome browser
AA seq
2030 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDLPDEDDEGERNAVVPLTPLDSFFSDDDSLKQQKKKKPKKM
KEGKIPKVKKRKKEGGIQPRVDSDPEETSEVEVERERPEIGSESESSMYGPTKKKKKKPK
EKKEKKPRKKKRDEEDEDDDDDDGNSKEPKSSSQLMQEWGLEDVQYGFTEDDYKTITNYK
AFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTV
AQPATVGGSQPISLPGPIKKAKTKEGKGPGVRKRSKSVKELKKKPKPKKTKSKSGQSGKK
KKASSSEEDFLEESDFDDISIHSASVFSDTLGAATKKKARRGRKKRKKEDGDGYETDHQD
YCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEE
EEVVAEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPP
LKGKVQKILHWTWGEPPLPAELPAGPDGKPNDPLTKPPLKGRAEREFFVKWAGLSYWHCS
WVSELQLELYHTVMYRNYQRKNEMDEPPPFDYGSGEEELNNEKRKSKDPQYAVMEERFYR
YGIKPEWMVIHRVVNHSFDTDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDSHIALYWDH
REQILGEDQRPLVERKGQKLKEDHQKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQ
LEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINW
EREFEMWAPDFYVLTYTGDKDSRATIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLT
SYELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLE
ELFHLLNFLTPVRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKVDVFKNMPAKT
ELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAV
EAPVLPNGSYDGNQLVKSSGKLTLLQKMLRKLKDEGHRVLIFSQMTKMLDLLEDFMEFEG
YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVVIYDSDWNP
HNDIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSM
SKQELDDILKFGTEELFKDEIEAARAMSGKSDGDTKDCEEGNVIHYDDDAISKLLDRDRD
ATEDTEIQNMNEYLSSFKVAQYVVKEEEGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQ
QEDLARNLGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGR
RQSRRQMKSERDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLV
RDLRGKSEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKK
VQEFEHVNGKLSSPDLIPIGMELKKLTESVSSDPNTPVPASPVATQPGTPVPPEKSESLL
GSMEDKETTEQDSKKVSEQETSSSEPASVPEKAADSEESKASSEEKTGDERDSTESPSTK
TEPSANPKESALKQAELSSAQISPKTDPCRDSEKGDNDSPLAKSEDKENKPDDVKSEDAL
EGRLNGDKDTLEELDDSRKDDRNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHD
IWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEIHKGNYLEMKNKFLARRFK
LLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLGGNKPAN
AVLHKGLRDSNRLLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRG
SEPPPQQQVNFMSVPQPFSQGAFGCSQMYGSSFGGGFRGPGGQPMVNYSQMPMGPYVSGK
DQHLQWITVSANGPPPPTSHLDKKSLDSLRDAVTPDLKSGKPSDVICIED
NT seq
6093 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaggacgacatggattttgaagacgat
ttgccagatgaggatgacgaaggtgagcgcaacgccgttgttcccctcacgcccctcgac
agcttcttctccgacgatgactccctcaaacagcagaagaagaagaagcccaaaaagatg
aaagagggaaaaatacccaaagtgaagaagaggaaaaaggagggaggaatccagccgaga
gtcgacagcgacccggaggagacctcggaggtggaggtggagcgggaacgtccagagatc
ggctccgagagcgagagcagcatgtacggccccaccaagaagaagaagaagaaaccgaag
gagaagaaagagaagaagccccggaagaagaagagagatgaggaagatgaagatgatgac
gacgatgatggtaactcgaaagaacccaaatcctcgagccagctgatgcaggagtggggt
cttgaagacgtccagtatggcttcaccgaggacgactacaaaaccatcaccaactacaag
gctttcagccagttcctcaggcctctcattgccaagaagaacccgaagattcccatgtca
aagatgatgacggtgttaggggccaagtggagagagttcagtgccaacaacccgttcaaa
ggcgcatctgccaccgccgtggccgccgccgtggctgccgctgtggagacggttaccgtg
gcacagccagcgactgtcggcggcagccagccgatctctctgccggggccaatcaaaaaa
gccaaaaccaaagagggaaagggaccaggagtcaggaagagaagcaagtctgtgaaggag
ctgaagaagaagcccaagccgaaaaagaccaaatcgaagtcgggccaaagtgggaagaag
aagaaagcctcctcgagtgaggaggacttcctggaggagtcagactttgatgacatcagc
atccacagtgcctcagtgttttccgataccttgggggccgccaccaagaaaaaggcccgg
cgtgggcggaaaaaaaggaaaaaggaggacggtgacggctacgagaccgatcaccaggac
tactgcgaggtttgccaacagggcggagagatcatcctgtgtgacacgtgtcccagagcg
taccacctggtctgtctggaccccgagctggagaaggcccccgagggcaagtggagctgc
ccgcactgtgagaaagagggaatccagtgggaggctaaagatgaagaggaggaggaggag
gaggaggtcgtggctgaggaggaggacgaccacatggagttctgcagagtgtgtaaagac
ggaggagagctgctgtgttgcgacacctgcccgtcctcctaccacatccactgcctcaac
ccgccgctgccggagatacccaacggcgagtggctgtgtccgcggtgcatgtgtcccccg
ctgaaaggtaaagtacagaagattctgcactggacatggggggaacctccgctgccggct
gagctgcccgccggccccgacgggaaacccaacgacccactgaccaaacccccgctcaag
ggccgcgcggagagggagttcttcgtaaagtgggcgggcctgtcgtactggcactgctcc
tgggtcagcgagctgcagttggagctgtatcacaccgtcatgtatcggaactaccagcgg
aagaacgaaatggacgagccgccgccgttcgactacggctccggagaggaggagctcaac
aacgagaagaggaagagcaaggacccccagtacgccgtgatggaggagcgcttctaccgc
tacggcatcaaacccgagtggatggtgatccaccgggtggtcaaccacagttttgataca
gatggcgatgtgcactacctgatcaaatggagagacctgccctacgaccagtgcacctgg
gaggtggatgacttcgatgtcccagagtacgacagtcatatagctctctactgggaccac
agggagcaaattctaggggaggaccaacgccccctggtggagaggaaaggacagaaactc
aaagaggaccatcagaaaagggaggtcccccctgacgctcccatcatagatccgaccatc
aagttcgagcaccagccgtggtacattaacgccactggaggaacgctgcacccgtaccag
ctggagggcctgaactggctgaggttctcctgggctcagggcacagacaccatcctggcc
gacgagatgggcctgggaaagacggtgcaaaccatagtgttcctctactcactgtacaag
gagggtcactccaaggggcctttcctggtgagcgcgccgctctccaccatcatcaactgg
gagcgggagttcgagatgtgggctccagacttctacgtgttgacgtacaccggggacaaa
gacagcagggcgacgatccgggagaacgagttcacctttgaagacagcgcagtgaaatca
ggcagaaaggtgtttcgcatgaagaaagacactccaatcaagttccacgtgctgctgacg
tcctatgagctgatcaccatagatcaagccattctgggctccatcacctgggcctgtctg
gtggtagacgaggcccacagactgaagaacaaccaatcaaagttttttaggattcttaac
gggtataagatctactacaagctgctgctgactgggacgcctctgcagaacaacctggag
gagctgttccacctgctcaacttcctcaccccagtgcgcttcaataacctggaaggcttc
ctggaggagttcgccgacatctcgaaagaggaccagatcaagaagcttcacgacctgctc
ggccctcacatgctccggaggctgaaggtcgacgtgttcaagaacatgcccgcgaagacg
gagctgatcgtcagggtggagctcagccccatgcagaagaaatactacaagttcatcctg
acgcggaacttcgaggctctgaactccaaaggtggagggaaccaggtgtcgctgctgaac
atcatgatggacctgaagaagtgctgcaatcacccctacctgttccctgtggctgctgtg
gaagctcctgttttacccaacggttcttacgacggcaaccaactggtgaagtcctcaggg
aaactgacgctgcttcagaagatgctgaggaaactcaaagacgagggacacagagttctc
attttctctcagatgacaaagatgttggatctgctggaggatttcatggagtttgaaggt
tataaatatgagcgtattgacggaggaatcaccggaggcctgagacaggaggccatcgac
cgcttcaatgcgccgggggctcagcagttctgcttcttgctctcaacacgagctggaggt
ctcggcatcaatctcgccagcgccgacactgtcgtcatctacgactccgactggaatcct
cacaacgacattcaagctttcagcagggcccaccgcatcggccaaaacaggaaggtgatg
atctaccgcttcgtgacacggggctcggtggaggagcggatcactcaggtggccaagagg
aagatgatgttgacccatctggtggtgcggccgggcctgggctccaaaaccggctccatg
tccaaacaggaactggacgacatcctcaagtttggcacggaggagcttttcaaagatgaa
atcgaggcggcccgggccatgtcaggtaagtctgatggtgacaccaaagattgcgaggag
ggcaacgtgattcactacgacgacgacgccatctccaagctgctggaccgcgaccgggac
gccaccgaggacacggagatccagaacatgaacgagtacctgagctccttcaaggtggct
cagtacgtggtgaaggaggaagagggagaggaggaggtggagcgtgagatcatcaagcag
gaggagaacgtggatccagactactgggagaaactcctccgtcaccactacgagcagcag
caggaggatctggctcggaacctgggcaaaggcaagcgcatccggaagcaggtcaactac
aacgacacgacgcaggaggatcaggagtggcaggatgatctttcagacaatcagtcggag
tactccgtggggtccgaggacgaggacgaagatttcgaggagaggcctgaaggaggtcgc
aggcagtctcgtcggcagatgaaaagcgagagagacaaacctctgcctccattactggcc
cgtgttggaggcagtattgaggtcctggggttcaacgcccgccagaggaaagccttcctc
aacgccatcatgcgatggggcatgccgccgcaggacgctttcaactctcactggctggtg
agggacctgcgagggaagagcgagcgcgagttcagggcctatgtgtccctgttcatgaga
catctatgtgagccgggggcggacggggcagagaccttcgctgatggcgtcccacgagag
gggctgtctcgccagcacgttctcaccaggatcggggtcatgtccctcgtcaggaaaaag
gtgcaggagttcgagcacgtgaacgggaagctgagttctcctgatctgattcccattggg
atggagctgaagaaactgacggagagcgtctcctccgaccccaacacgccggtgccggcg
agccccgtggccactcagcctggcacccccgtcccccccgagaagagcgagtccctcctg
gggagcatggaggacaaggagaccacagagcaagacagcaagaaagtgtcagagcaggag
acctccagctcggagccggcatctgtacctgagaaggcggctgacagcgaggagagcaag
gccagctcagaggagaaaacgggagatgagagggacagcaccgagtcgccctccacaaag
acggagccatctgccaaccccaaagagtcggctttgaagcaggcagagctgtcatccgct
caaatctcacctaaaacggatccctgcagggactcagaaaaaggagataacgattctcct
ctggcgaaaagtgaagacaaggagaataagccagacgacgtgaagagtgaagacgcgttg
gagggtcggctgaacggggacaaagacactctggaggagctggacgacagcaggaaggac
gacagaaatggattcaaagccaagttcatgtttaatatcgctgacggaggttttacagag
ctgcacaccctgtggcaaaccgaagagcgagccgcgctgtcctctggaaagatgcacgac
atctggcaccgtcgccacgactattggctgctggctggcatcgtaacacacggctacgct
cgctggcaagacattcagaacgacccccgctatgcgattctcaacgagccctttaagact
gagatacacaagggcaactacctagagatgaagaacaagttcctggctcgccgctttaag
ctgctggagcaggctctggtgatcgaggagcagctgcggcgggcggcctacctgaacatg
acccaggaccccagccacccggccatggccctcaacactcgctttgctgaggtggaatgt
ctggccgagtcccaccagcacctgtccaaagagtccctgggtgggaacaagccggcgaac
gccgtgctgcacaaaggtctcagagatagcaacagattgctgaaccagctggaggaactt
ctgagcgacatgaaagccgatgtgactcgactgcccaacatgttgtcccggatcccaccg
gtgtcggcgcgcctgcagatgtccgagaggagcatcctgagccgcctcaccagccgaggc
agcgagcctccgccgcagcagcaggttaacttcatgtctgtccctcagcctttcagccag
ggggcgttcggctgctcccagatgtacggcagcagcttcggcggcggcttcaggggcccg
ggtggacagcccatggtgaactacagccagatgcctatgggaccctacgtcagcggtaag
gatcaacatctgcagtggataacagtgtccgctaacggccccccaccccccacaagccat
ctggacaagaagtcactcgactccttgagagacgccgtcacgccggacctcaagtcaggc
aaacccagtgatgtcatctgcatcgaggactag
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integrated database retrieval system
