Hippoglossus hippoglossus (Atlantic halibut): 117762152
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Entry
117762152 CDS
T07778
Symbol
tsen2
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2 isoform X1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhip03016
]
117762152 (tsen2)
Enzymes [BR:
hhip01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
117762152 (tsen2)
Transfer RNA biogenesis [BR:
hhip03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
117762152 (tsen2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
117762152
NCBI-ProteinID:
XP_034442543
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All DBs
Position
5:426147..431399
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AA seq
364 aa
AA seq
DB search
MQAEFRAPRRRTRVQEEYEAPLPVSRSPRERTDLRAELINLHVLVCQPDHIQKIYNQGYF
GKGVLSRARPDHSIFDQWEQHEGSFLPLVSESRYDEMLKWAGAALFAQGLDDEAVSQILT
RLSQPVEMEDVRREETSRSVVEPDVKSSCSSYRDPESDPDPLVRGAGFVLVCDSKVGGGV
REVRRAPFSLSEYLQLSLEEAFFLVYSLGCLSIYLHQEPLTIIQLWRKFRSLRPDFVSSY
AAYHHFRSRGWVPKGGGGAKYGVDLMLYRKGPPFYHASYSVVIERVDDAFIGSALRPFSW
RSLAALNRITANVSKELMLCYVIHPAAQSEAELDSPECLRRLKVQDVIISRWVSSRERAE
QDDI
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcggagtttcgggctcctcggcgccggacccgggtgcaggaggagtacgaggct
ccgctgccggtgagccgcagcccgagggagaggaccgacctccgggcggagctcatcaac
ctgcacgtgttggtttgtcaaccggaccacatccagaagatctacaaccagggatacttt
gggaaaggggtcttgtcaagagcgagaccagaccacagcatcttcgaccaatgggagcaa
cacgaaggttcgtttctacctctcgtctcagagtccaggtatgatgagatgctaaagtgg
gcgggagcagctctcttcgcccagggattggacgatgaggctgtcagtcaaatcctgacg
aggctctctcagcctgtagagatggaggatgtgaggagggaggagacgtcgaggtcagtg
gtcgagccggacgttaagagcagctgcagctcgtaccgggacccagagtctgaccctgat
cctttggttcgaggtgctggttttgtcctggtctgtgacagcaaggtcggtgggggggtc
agggaggtcagacgggctccgttctctctgtccgagtacctgcaactcagcctggaggag
gccttcttccttgtctacagtctgggctgcctgtctatctacctgcaccaggagccccta
acaatcatccagctgtggaggaagttccgatccttgcgccctgacttcgtcagctcgtac
gcagcctatcatcattttcgcagcagggggtgggtccctaaaggagggggcggggcaaaa
tatggcgttgacctcatgttgtacaggaagggtccacctttctaccacgcaagttactcg
gtggtaattgagcgcgttgacgatgcattcataggctctgcattgcgtccgttttcgtgg
cgttctcttgccgctctcaacaggatcactgccaatgtttctaaggagctgatgttgtgc
tacgtcatccatccagccgcccaatcagaggctgaactggactcacctgagtgtctgagg
agattgaaggttcaggatgtgatcatcagccggtgggtttcctccagggagcgggcagag
caggatgacatctga
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integrated database retrieval system
