Hippoglossus hippoglossus (Atlantic halibut): 117762248
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Entry
117762248 CDS
T07778
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform X1
KO
K06757
neurofascin
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117762248 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117762248 (nfasca)
Cell adhesion molecules [BR:
hhip04515
]
Immunoglobulin superfamily
L1 family
117762248 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
BiPBP_C
DUF3792
Motif
Other DBs
NCBI-GeneID:
117762248
NCBI-ProteinID:
XP_034442680
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Position
5:29941174..30062863
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AA seq
1398 aa
AA seq
DB search
MLGQGRHTALALVSLLLLSLREATPIEVPQDPKIQQDLKQPPTIVKQSVKDYIVDPRDNI
IIECEAKGNPVPTFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRSGGRPEDYEGEYQCF
ATNDFGVALSNKILLRVSKAPLWPKEVLEPVVVTEGSPLVLTCNPPPGLPPPFTFWMSSA
MNPISQDKRVSTGLNGDLYFSNVVAQDAHTDYSCNARFLFTHTIQQKNPFTLKVLTKEPY
NETSYNATDPYGGRKVSESTPTFLSPSGSESSKIVQRDEQLLLECIAAGLPTPTVKWFKK
GGDLPGHKVKFQNFNKTLKIISVSEEDAGEYVCMANSHLGSIRHSIFVQVKAAPYWLDKP
TDLVLAPDENGRLVCRANGNPKPNIQWLINGQPIDTSPANPSRQVLGDTILFRSVQMGSS
AVYQCNASNQHGYLLSNAFVSVLDMPPRMLGPKNQLIKVIENNRTFLDCPFFGSPLPELR
WFKNGQGSGLDGGQYRVYINGTLEIKRARTEDEGTYTCVANSILGSAENQVRLEVKAQTR
IVRFPEHQSAIRGSTARFNCKVKSDPSLPVTVTWTKDDKALYLGWRLRKDDESLTIPNVN
EGDEGTYTCTVKSEIDQDSASARLTVLEEASLNPSLSSALPPDRPDPPIDLDLSDPAARS
VRLTWIPGNDHRSVITEFLVQFEEDRWEPGRWQNLSTYPGDLNSVILQLAPFVNYQFRVI
AINSVGQSQPSRPSPRYKTSGAAPDVIPRGLRGWGSKKDNMEITWEPLLDLERNGPNLQY
NVWWRRKDVGEEWSNVTTEGSKHIIHNTETYVPYEIKVQARNEFGQGPESNVVIGYSGED
KPTDAPTDFRVSKVDSTKANIHWKSVDPNSVQGEFKEYKLYYWRESSIVPGLMVSKENKT
KGIYSTTSEPSGILSDLVPYSKYKMFIVVANRHFEGPPSNTVEFSTKEGVPDAPRFFRIN
RRSFDTIYLEWDKPLEPNGILTGYQLKYQTVNGSRVGRQQLETFLPNMTDFTLRLPDRST
RFKFLLSALTQVGAGEVFAEESPHFTNEDNFTDTTGLVNLTDTSVASTFTPTPPPLASLP
PTTMAPTTIAPTTISTSTTTTPKATTSPSTTTTPTTATTATEATTTTTPPVLVTTRRTDQ
NVLVAPGQKIWDLTVEPNSNYANVSWRHNFPAGSSEFVLEFTLDSNNTERTVRVTQQPPI
RVADLIAGAAYRLRVYSHEFNSISSNYFNFKTQAAYIDQVDIATQGWFIGLMCAIALIIL
ILLIVCFIKRSRGGKYPGGCCVTGFAKYLVRDKKDLPLDSVDHKDQDGSFDYQNENENRS
LESSDEDNKPLQGSQTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKDETE
GNESSEATSPVNAIYSLA
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgttggggcagggcaggcacacggccctggctctcgtgtctttactgcttctatcattg
cgtgaggcaacacccatcgaagtcccacaagacccaaagatccagcaagacctgaagcaa
ccccccactatagtcaaacagtcagtgaaggactacattgtcgacccaagagataacatc
atcatcgagtgtgaggccaagggcaacccagtgccaacgttttcatggcgaaggaatggg
aagttcttcaacattgggaaagatcccagggtgacaatgcgaaaacgctcaggaacactg
gagattggtttccgtagcgggggacgaccagaggactacgaaggagagtaccaatgtttt
gctaccaatgactttggagtagctctgtccaacaaaatcctgctgcgggtctcaaaggct
cctctgtggcccaaggaggtgttggagccagtggtggtgactgaaggctccccactggtt
ctaacctgtaaccccccaccaggactacctcctccctttaccttctggatgagcagcgct
atgaacccaatatcacaagataagagagtgtctacaggtttgaatggagacctgtacttc
tccaatgttgttgctcaagatgctcacacagactacagctgcaatgctcgcttcctcttc
acacacaccatccagcagaagaaccccttcacactcaaagttctcaccaaggagccatat
aatgaaacatcttacaatgccactgacccctatggtggccgtaaagtatccgagtccacg
ccgaccttcctctcaccatcaggcagtgagagctccaaaattgtgcaacgagatgagcaa
ctgctactggagtgtatcgctgctggactaccaactcctaccgtcaagtggttcaagaag
ggcggggacctgccaggacacaaagtgaagtttcagaatttcaacaagaccctgaagatt
atcagtgtgtcagaggaggatgctggggagtatgtgtgcatggccaacagtcatttaggc
agcatacgccacagcatctttgtccaggttaaagcggctccttactggctggacaaacct
acggacctggtgctagccccggatgagaacggccgcctggtgtgtcgggccaacgggaac
cctaaacctaacattcagtggctgatcaatggacaacctatagacacctctcctgctaac
ccgagcagacaggtgcttggtgacaccatcctcttccgctcagtgcaaatgggaagcagt
gctgtttatcagtgcaacgcctccaaccagcatgggtacctgttgtccaatgccttcgtc
agtgttctcgacatgcctccgaggatgctgggccctaaaaaccaattgattaaagtcatt
gagaacaaccgcacctttttggattgtccattctttggttcccctctgcctgaactacgc
tggtttaagaatggacagggcagtgggctggatggtggtcagtaccgtgtttacatcaac
ggcaccctggagatcaaaagggctcgaacagaggacgagggcacatacacatgtgttgcc
aacagcatcctgggctcagccgagaaccaggtccgcctggaggtcaaagcgcaaactcgt
atagtcagattccctgagcaccagtcagccatcaggggctccacagctcgtttcaactgt
aaagtgaagtcggatcccagcctgcctgtcactgtgacctggaccaaggatgacaaggct
ctctatctaggatggaggctgaggaaggatgatgagtcactgaccatccccaatgtgaat
gagggtgatgagggaacatacacctgcactgttaaatctgagattgaccaggactccgca
tctgcccgcctgactgtgttagaggaagcctccctcaacccctcactctctagtgccttg
cctccagaccgcccagaccctcccatagatctagatctgtctgacccagcagcccgcagt
gttcgcctcacctggatccctggaaatgatcacaggagtgtcatcacagaattcttggtc
cagtttgaggaggaccgctgggagccaggcaggtggcagaacctgtccacttaccctggg
gacctcaactctgtcatcctgcagctcgccccatttgtcaactaccagttcagggtcatc
gccattaattcagttggccagagtcagcctagccgtccctcaccaagatacaagaccagt
ggagcggctccagatgtaattcccagaggtcttagaggatggggctccaagaaggacaac
atggagatcacttgggagccactgcttgatctggagagaaatggtccaaatctacaatac
aacgtgtggtggagacggaaggatgtgggggaagagtggagtaatgtgaccacagagggg
tccaaacatatcatccacaacacagaaacctatgtgccttatgagatcaaagtccaggcc
agaaatgagtttgggcaaggacctgagtctaatgtggtcattggatactctggagaggac
aagcccacagatgctcccactgactttagggtatcaaaggtcgacagcaccaaagcaaac
atccactggaagtctgtggacccaaactctgtccagggagagttcaaagagtacaagctg
tattactggcgtgagtccagtatagtcccaggtttgatggtcagtaaggagaataagacc
aaagggatctacagcaccacgtccgagccatctggcatcctcagtgacctggtgccctac
tctaaatataagatgtttatagttgtggccaacagacactttgaaggccctcccagcaac
actgtggagttctccaccaaggagggagtccccgatgctccaagattcttcaggatcaac
aggaggagttttgacactatctacttggaatgggataaacctttggagccaaacggcatt
ctaactggataccaactcaaatatcaaacagtcaatggctccagggtgggtcgacaacag
ctggagacttttcttccaaatatgacagacttcacccttcgcctgccagatcgatctacc
cgctttaagttcttactgtcagcgctcacacaggtgggagcaggagaggtcttcgctgag
gagtccccacacttcaccaatgaggataattttactgatactacaggtctagtcaacctt
acagacacctctgtggcttcaactttcactcccactcctcctcctctcgcttctcttcct
cctactaccatggctcctacaaccatcgctcctacaaccattagcacctcaactactacc
actcctaaagctacaacttctccttctactacaacaactcctactaccgccaccactgca
actgaggcaacaactaccaccacacctcctgtgctagtcaccaccaggcgtaccgatcag
aatgtgttggtggcccctgggcaaaagatctgggatctgacggtggagcctaacagtaac
tacgctaacgtcagctggagacacaacttcccggccggcagcagcgagtttgtgctagag
ttcacactggacagcaacaacacggagagaacagtacgagtgactcaacagccccccatt
agagtggcggatctgatcgcaggtgccgcgtaccgtctgagggtttactcccatgaattc
aacagcatcagcagcaattatttcaactttaagacccaagcagcttacatagaccaggta
gacatcgccactcagggctggttcatcggcttgatgtgtgccattgccctcatcatactg
atcctcctcatcgtctgcttcatcaaaaggagtcgtggtggcaaatatccaggtggctgc
tgtgtgactggtttcgcaaaatatctcgtgcgtgacaaaaaagatctccccttagactca
gtggaccataaagaccaggatggatccttcgattaccagaacgaaaacgaaaacaggtct
cttgaaagcagcgatgaggacaacaagcctctgcagggcagccagacttcgctggatggc
aatgtgaaggaaagcgacgacagcctcgtggactatggtgaaggtggcgatggtcagttc
aacgaggatggctcttttattggccagtacacagtgaagaaggacaaggatgagacagag
ggcaacgagagctccgaggccacttcacctgtcaatgccatctactcactggcatag
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