Hippoglossus hippoglossus (Atlantic halibut): 117762578
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Entry
117762578 CDS
T07778
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117762578 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
hhip03310
]
117762578 (roraa)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
117762578 (roraa)
Nuclear receptors [BR:
hhip03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
117762578 (roraa)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
117762578
NCBI-ProteinID:
XP_034442868
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Position
6:13916210..14095083
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGTKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtccccgccagatccagcgagcgatccgggcaacagcgcctcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggaccatccagccccg
gttcgaagacagacctgctccagcaccaacagaggtatctcagtaacaaagaagacacac
acctctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcctactcctgcccccgtcagaagaactgcctgatcgaccgcaccagccgcaaccgc
tgccagcactgccggctgcagaagtgcctggcggtgggcatgtcacgggatgcggtgaag
tttggccgcatgtcgaagaagcagcgagacagcctgtacgctgaggtccagaagcaccgg
ctgcagcagcaacagcgtgaacaccaacagcagcctggcgaggcggagccactcacacct
agctacggcctctcagccaatggcctcacggagctccatgacgacctcagcggctacatg
gacggtcacacccccgatggcaccaaaccagactccgcggtcagcagcttctacctggac
atccagccgtcccctgaccagtcaggcctggacatcaacggcatcaagccggagcccatc
tgcgacttcgcccccggctctggcttcttcccttactgctccttcaccaacggagaaaca
tcccccaccgtgtccatggctgaactagagcacctggcccagaacatctccaagtcacac
atggagacatgtcagtacctgagggaggagctgcagcagatgacctggcaggccttcctg
caagaggaggtggagagctaccagagcaagccccgggaagtcatgtggcagctgtgtgct
atcaaaataacagaggccattcagtatgtggtggagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagtcgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacaccgtctatttcgatggaaaa
tatgccggacctgatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gcctttgtgttgatgtctgctgatcggtcctggctccaggagaaagtaaaggtggagaaa
ctccagcagaagatccagctggccctccagcatgtcctgcagaagaaccacagagaggac
ggaattcttacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagcttacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagttgttcggatcagactttgagcagtccatgcccgttgacgggtag
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