Hippoglossus hippoglossus (Atlantic halibut): 117762640
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Entry
117762640 CDS
T07778
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117762640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117762640
03036 Chromosome and associated proteins [BR:
hhip03036
]
117762640
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117762640
Coactivators
SAGA/TFTC/STAGA complex
117762640
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117762640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
SH3_20
Motif
Other DBs
NCBI-GeneID:
117762640
NCBI-ProteinID:
XP_034443014
LinkDB
All DBs
Position
6:complement(273175..290381)
Genome browser
AA seq
978 aa
AA seq
DB search
MAGASDPLEDMLFTEVDEKAVSDLVGSLESQLGDRKTPAPSLSDGNREAAPAAAAQFSGK
VRDQVGSAEPQQGHPKAGLTQGPGANEPLSGPSLSSSTSSVATGAVITTGAGLQTVGAAP
PTASPGPGPVTLPTPPAAAASFHRAAVLAPSAAPSSSAVPVADGSRSGSPALLSLNGNGG
AAKLVNSPAVAPPAGGSTVISAVSAGGSAVINPMTSQPTFPGPAPTVVLQRHPGPAASVT
QNGMDPKVVTQGAPPASSPQVMNHSTPLMHAKMLVPSQPVSGNTVILTSTASAVQSPITQ
TVSSPAAITLTGVKPAMNGVAQPAVTVVRPPGGPVMATSLQQQRPAMVASSTRAAAPQLP
LAVRPQQQTTIQLPPGFTMPAGMVLVRTETGQLVMVPQQVLAQAQAKTQQAQTVANITQR
PGTPTAGAAIRVSTATTVRLAPVTPHTVRLAAPAPTRMVQSPSTTTVQKAITVAPGGAAV
SVKMTTPQKAPTVITAGGMPAAKPAAALTNTTPAATATPPNRVTVVSQEMQENVKKCKNF
LATLIKLASHNSPSPDTSKNVKALVQDLLDAKIEPEEFTTRLQAELKSSPQPYLIPFLKK
SLPALRQSLLSSQQSLSVPSTSTPALAAPGSITATAIRPRLPVSPASSTIKLNTPLTNTT
ALAVGRAGVQTVQTRSPVVISQTLRTQATLIRGSPTIVGMCLVHLAAQANQKKLSDPGGG
TFRDDDDINDVASMAGVNLNEENARILATSSELVGTKIRSCKDEAFLPTGLLHRRILDTA
KKLGVSEVPLEVVNFISHATQSRLRSLLETVSAVAQHRTDGGKDEDHHEPSSDVRSQLRF
FEQLERMEKQRKDEQEREMLLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANL
TALAAIGPRKKRKLDSPGGAAAGPEVASGSGVGSSVSPSSRQQLRQRITRVNLRDFIFCL
EQDRSTARSLMLYKALLK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcacggaggtggatgaaaaagcc
gtcagcgacctggtgggttcgctcgagtctcagctgggcgacagaaagactcccgcccct
tcgctttccgacgggaaccgggaggcagctccggcggccgcggctcagttctcagggaaa
gtgcgcgatcaagtggggtctgctgagccgcaacaagggcatccgaaagcggggttaacc
cagggacccggcgccaacgagccgctctccggtccgagcctctcctcctctacctcctcc
gtcgctaccggggccgtgatcaccaccggagccgggctacaaactgttggagctgctccc
ccgactgcttcccccggaccgggacccgtaactttgcccactccgcccgccgccgctgct
agcttccaccgggcggctgtcctggctccgagcgcggctcccagctcctccgccgtcccg
gtggcggacggttcccggagcggatctcccgctctgctcagtttaaacggaaacggcgga
gctgcaaagttggtgaactcgcccgcggtcgcgccaccggccggaggcagcaccgtgatc
agtgctgtcagtgccggggggtccgcggtcatcaaccccatgacttctcagcccactttc
ccgggaccggctcccaccgtggtcctgcagagacaccccggccccgcggccagcgtcacc
cagaacgggatggaccctaaggtggtgacccagggcgcccccccagcctccagccctcag
gtgatgaaccacagcacccccctgatgcacgccaagatgctggtgcccagtcagcctgtg
tccggaaacaccgtcatcctgaccagcaccgcctctgcagtccagtcccccatcacccag
accgtgtccagtccggctgccatcaccctgacaggggtcaaacctgccatgaacggggtg
gctcagcctgcggtgactgtggtgaggcctccgggcggcccggtgatggccacctccctc
cagcagcagagacccgcaatggtggcgagctcgacccgggcagctgcccctcaacttcct
ctggctgtccggccccagcagcagaccaccatccagctgccccccggcttcaccatgcct
gcaggtatggttctggtgcggacggagacgggtcagctggtcatggtccctcagcaggtc
ctggctcaagctcaggccaagacccaacaggcccagactgtggccaacatcacccagaga
cctggcacaccgacggctggggccgccatccgggtcagcaccgccaccacggtacgtctg
gctcctgtcacacctcacaccgtccgcctggcggcacccgctccgaccaggatggttcag
tctccctccaccaccaccgtacagaaggccatcaccgtggcccctggtggtgcagcggtg
tctgtgaaaatgacgacacctcagaaggctccaacggtgataacagccggggggatgccc
gcagccaaacctgccgccgctctgaccaacacgacccctgctgccacagccacgcccccc
aacagagtcaccgtggtgtcgcaggagatgcaggagaacgtgaagaaatgcaagaacttc
ctggccacactcatcaagctggcgtcccacaattctccctccccagatacctccaagaat
gtgaaggccctggtgcaggacctgctcgatgctaagatcgagccggaggagttcaccact
cggctgcaggctgagctgaagtcctcccctcagccctacctcattcccttcctcaagaaa
agtctccctgccctgcgtcagtctctgctcagcagccagcagtctctgagtgtccccagc
acctccacaccagccctggccgcccccggctccatcaccgccaccgccatcagaccccgg
ctgcccgtcagtccggcgagcagcaccatcaaactgaacacgccgctcactaacacaaca
gctctggccgtgggcagagccggagttcagacggtccagactcgttcacctgtcgtcatc
agtcagactctcagaactcaagcgacgctcatcagaggatctccgaccatcgtcggcatg
tgtctggttcacctggcagctcaagccaatcagaagaaactaagcgacccagggggcggg
acgttcagagatgacgatgacatcaacgacgtggcgtccatggctggcgtcaaccttaac
gaggaaaatgcccgtatcctggcaaccagctcggagctggtgggcacaaagatccgctcg
tgtaaagacgaagccttcctgcccactggtctgctgcaccgccgcatcctggacacagca
aagaagctgggtgtgagcgaggtgccgctggaggtggtgaacttcatttctcacgccact
cagtccagactgcgctcgctgctggagacggtgtcggccgtcgctcagcatcgtacagac
ggaggaaaggatgaagatcatcatgaaccgtcgtcagacgttcgctcgcagcttcgcttc
ttcgagcaactggagcgaatggagaaacaaaggaaagatgaacaggagagagagatgctg
ctgaaggctgccaagagtcgtgcgagacaagaggatccagaacaggctcgtctgaagcag
aaggccaaagagatgcagcagcaagagttggctcagatgcgacaacgagacgccaacctc
acagccctcgccgccatcggaccacgcaagaaacgcaagctggactccccgggaggagca
gcggcgggcccagaggtggcctcaggctcgggtgtcggctcctctgtgtccccctcctcc
cgccagcagctccgtcagcgaatcactcgagttaacctcagggacttcatcttctgtctg
gagcaggaccgcagcacggcccgctcgctgatgctctacaaggcgctgctgaaatga
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