Hippoglossus hippoglossus (Atlantic halibut): 117762658
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Entry
117762658 CDS
T07778
Symbol
lamb4
Name
(RefSeq) laminin subunit beta-4
KO
K06245
laminin, beta 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117762658 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117762658 (lamb4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMININ_IV_B
LAMB1
LAMB4
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
117762658
NCBI-ProteinID:
XP_034443044
LinkDB
All DBs
Position
6:34796..59698
Genome browser
AA seq
1814 aa
AA seq
DB search
MMNMFFFFQNPSLIRVCQRNMINMIFIFIIFLPVSQLQDLQDQCPGSSCSPQLGDLMVGR
AAQLSASSTCGLDGAQNYCIIGYLEEEKKCFSCDSRLPYNRYSNPNSHRIENIITTFDLE
RKTKWWQSENGVHQVSIQFNLETVFQFSHLVLTFKSFRPAAMLVERSKDFGQTWKVFRYF
AEDCSLHFPSVSNEAADSVDDIICDSRYSGSEPSTNGEVVLKALDPIFEIRNPYAPNIQD
LITLTNIRVNFTRLFTLGDTLLSRRRRNPLNKYYYALYNMVVRGSCFCNGHASRCTPVDG
RHGDVFTQTGMVHGRCVCQHNTAGNNCERCQDFHHDSPWRPGGGDTAGICRRCNCHGHSD
SCHFDDIHFEATGGISGGVCDNCRHDRMGPHCEQCRPFLFQDPQRAMDDPHACIPCDCDA
AGAHGGGLCEAQTGQCLCKENVEGRRCEHCKHGFFGLRQDDPAGCQVCRCHALGSVGSCD
QLTGSCECDSLASGPLCDRCLEGFWGLGNSAIRCSPCDCDVGGAQSIMCSPEDGQCSCLQ
NMIGRRCSDPAPGFFLPSLDYFLYEAELAAPLPGGSRSSTDAPSSSSSLVNPGVLPECEK
SYREQGFDFKFTDGRVVLVRRTRRLTRRRRQGQPTSIPLDPNHALQIIPRQKTRDQPVTW
TGLGLVRVLEGAGLRFTVDNLQSSMGYQLVIHFETEALSDWLASVSIIMMSPGDGGCSNN
PTGSETLILPGNSRGRGLDSSVCLNAGGRYFVDVVFNKQSGSDGSHILIDSIGLIPRIES
VQNFCSQSDLESFRHFRCIGLAAELQPHDSLPEVCEGLIKSMSARIHNGAVPCRCNFIGS
LGPSCSKLGGFCECKPNVMGRCCDTCAPMTFDLGLDGCKSCGCDARGSVAQLCDQVRGQC
ACRSAATGRRCNHCHTGFWDFPLCRPCECNNLSETCAEETGECLNCREHATGSHCDRCVE
GYYGNPVSRQPCQPCLCPDVKYSGQFFATSCQHDPQSLSLTCICQEGHTGSRCNRCSPGF
YGDLTLPGARCAECPCNNNIDLGDRNACNSLTGECLGCRHNTVGPRCQSCKLGYYGNALV
QDCKECSCDRRGTEVTRCPLGSSCFCDPSTGQCPCRTGVVGVLCGQCEDGYWNLDGPSGC
QPCSCDPVNSFSNICNKVMGQCPCRPEFGGRQCDECGENHFGNPDLQCISCDCNLEGTKR
PSCDPETGECICRTGVTGIFCDECALGYSSAFPACEECHPCTALWAESVTDVHRAAQKMR
TFIPRHGKDLRPGESHPRHQMLQMHSKLDSLTNLTGLSLQKLEKVENLCVRIGKLKDAVD
PNMILIDPSPLLDTEMENIRQEFKKLLKSVKENVMELPHEEEEEDADELLDEIQKILTRF
MLDEKRVKSATKALDDSVDIRQEVKHKLSVCGSRGDVTPVEKKITELSVVNLNRQICGRP
GLDNCSGCGGALCVLAPGRRKCGGSSCDGVVPISHHASEQSERAKEQLLSLPSRLEESKN
KMNSMKQAAQDSKDQAKNLHERINERLDTFEREKNKTRELIQQTKDYLMDEMVPIEDIEK
MARAVLNIQLPRSPAQIRSMINEINNLLSNTAHVQDELKKLEEPVRRTKDLLQKAQEVQE
RTKDMDWTEISRDTYEAERAQDKANNDLETANRDRDTTKAQVQDIKDKLNKFETNLMNNR
PEDLRNQIEALKKKTEQNRAVAQEAQEAAQSAINTTMNLDNVMTFFEVLKQRTSNQSAQG
EAGERLKKIIEEVENLKRQMEDKLRNIQGVEQRIQQLIRRKENKSAEVSQMLETVESLRQ
EISKRAEVYASCTS
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacatgttttttttctttcagaatccatcattgatcagagtctgtcagagaaac
atgatcaacatgatcttcatcttcatcatttttcttccagtgagtcagctccaggacctc
caggaccagtgtcctggcagctcgtgtagtcctcagctgggtgacctgatggtgggtcga
gctgctcagctctcagcctcatcaacctgtggtctggatggagctcagaactactgcatc
atcggatacttggaggaggaaaagaaatgtttctcatgtgactcacgtctgccgtacaat
cgctatagcaacccaaacagccaccgcatcgagaacatcatcacaacctttgaccttgaa
agaaaaacaaaatggtggcagtctgagaacggtgttcatcaggtcagtatccagttcaat
ctggagaccgtgttccagttcagccacttggttctcaccttcaagagtttccgtccagca
gccatgttggttgagcgatcgaaggattttggacaaacgtggaaagtttttcgttatttt
gcagaagactgttcacttcatttcccttcagtgtccaatgaggcggctgacagtgttgat
gacatcatctgtgacagtagatactctggatcagaaccgtccaccaatggagaggtggtg
ctgaaagcgctggatccaatatttgaaatacgaaacccgtatgcaccaaatatccaagat
ctgatcactttgactaatatccgggtgaacttcactcgtctcttcacgctcggtgacact
ctgctgagtcgaagacgcaggaaccctctgaataaatattactatgctctttacaacatg
gtagtccgaggaagctgcttctgtaacggacacgccagcaggtgcacacctgtggacgga
cgacatggggatgtcttcacccaaactggcatggttcatggtcgttgtgtttgtcaacac
aacacagctggaaacaactgtgagagatgtcaggactttcaccacgactccccctggagg
ccgggaggaggagacacagctggcatctgcaggaggtgtaactgtcatggtcactcagac
tcttgtcacttcgacgacattcattttgaagcgacgggtggcattagcggtggcgtgtgt
gacaactgccgccatgacaggatgggtcctcactgtgaacagtgtcgaccttttctattt
caggatcctcagagagcaatggacgaccctcacgcctgcataccttgtgactgtgatgca
gcaggagctcatggcggcggtctctgtgaagctcagactggtcagtgtctctgtaaagaa
aacgtggagggtcgacgctgcgagcactgcaaacatggcttcttcggcctgaggcaggac
gacccggccggttgtcaggtgtgcaggtgtcatgctttgggaagtgttgggtcatgtgat
cagctgacaggaagttgtgaatgtgacagtttggcgagcggcccgctgtgtgatcgatgt
ctggaaggtttctggggtttaggaaactcagcgatcagatgttcgccatgtgactgtgac
gtcggaggagctcaaagcatcatgtgttctccagaggatggacagtgtagctgtttacaa
aacatgattggtcgacgctgctctgaccccgcccctggtttcttcctaccttcacttgac
tacttcctgtatgaggcagagctcgcagctccacttcctggaggaagccgttcttctact
gatgctccatcatcttcttcttctctggtgaatccaggtgtgttacctgagtgtgagaaa
tcttacagagagcagggttttgactttaaattcaccgacggacgagtggttttggttcgg
aggactcgtcgactcacccgcaggaggagacaggggcagccaaccagcatccctctggac
ccaaatcatgccctgcagattatcccccgtcagaagacacgtgatcagccagtcacctgg
accggcctgggattggtcagggtgttagagggggctgggcttcgattcactgtggataac
ctacaatcatcaatgggttaccaattagtgattcactttgaaacagaggctctgtctgat
tggctggcttcagttagcatcatcatgatgtcaccaggtgacggtggctgcagtaacaac
ccaacaggaagtgaaactctgattcttcctggaaactccagaggacgtggtctggattct
tcagtgtgcctgaatgcaggaggtcgttactttgttgacgtcgtctttaacaaacagtct
ggatctgatggatctcacatcctcattgactcgataggtctgattccaagaatagagtct
gtccagaacttctgctctcaaagtgaccttgaatcgttccgccactttcgttgcatcgga
ttggctgctgagctccaaccacatgactcactcccagaagtctgtgagggactgatcaag
agcatgtcagcacgaatccacaacggagcagttccttgcaggtgtaacttcataggctct
ctaggaccatcttgtagtaaactaggtgggttctgtgaatgtaaacccaatgtgatgggc
cgttgctgtgatacctgtgcaccaatgacatttgacttgggactcgacggctgcaaatcg
tgtgggtgtgacgctcgtggttcagtggcgcagctgtgtgatcaggtcagaggtcagtgt
gcgtgtcggtcagccgcgacggggcgacgttgcaatcactgccacacaggattctgggat
ttccccttgtgtcgaccctgtgaatgtaacaatctatctgagacgtgtgctgaagagacc
ggggagtgtctgaactgcagggaacacgccaccggatcgcactgtgacagatgtgtggag
ggttactatggaaaccccgtctccagacagccctgtcagccctgcttgtgcccagacgtt
aagtacagtggacaattctttgccacttcctgccaacatgacccacaatccctcagtctg
acctgcatttgccaggaggggcacacaggttcacgatgcaacagatgcagccctggtttc
tatggagacctgacgttgccaggtgcccgttgtgcagagtgtccctgcaacaacaacatc
gacctgggcgaccgcaacgcctgcaacagcctgacaggtgaatgtctgggctgccgccac
aacacggtgggaccacgctgccaaagctgcaaacttggttactatggaaacgctctggtc
caagactgcaaagaatgctcctgtgaccggcgtgggacggaggtgactcgttgccctctg
gggagttcttgtttctgtgatccaagtacaggacaatgtccgtgcaggacgggtgtcgtg
ggagtcctctgtggccaatgtgaggatggatactggaacctggacggaccgtcaggatgt
cagccctgcagctgtgatcctgtcaactccttctccaacatctgcaacaaggtgatggga
cagtgtccatgtcgtcctgagtttggagggagacaatgtgacgaatgtggagaaaatcat
tttgggaatccagacctgcagtgtatctcttgtgactgtaacctggagggaaccaagcgt
ccatcatgtgaccctgaaaccggggagtgtatctgtcgaactggagtcaccggtatcttc
tgtgatgagtgcgccctcggctacagctcggcattcccagcgtgcgaggagtgccacccg
tgcaccgctctctgggctgaaagtgtcacggatgtccatcgagcagcacagaagatgaga
accttcatccctcgccacggcaaagacctgcggcctggagagagtcacccccggcaccag
atgctgcagatgcactccaagctggacagcctcaccaatctgacaggactgtcattgcag
aagttggagaaggtggaaaatctttgtgtgaggattgggaagttgaaagatgccgttgat
ccaaacatgatcctgatcgatccgtctcctcttctcgacaccgaaatggaaaacattcgt
caggagtttaagaagctgctgaaaagtgtgaaggagaatgtgatggagctcccacatgaa
gaagaagaagaagatgcggacgagctgctggacgagatccagaagattctgacacgtttc
atgttggatgagaaaagagtaaaaagtgcaaccaaagctttagacgactccgtggacatc
agacaggaagtgaaacacaaactgagcgtgtgcggcagcagaggagacgtgacgccagtg
gagaagaagatcacagagctcagcgtggtcaacctaaaccgacagatctgtggaagacca
ggtctggacaactgttctggatgtggtggagctctgtgtgttctggctccagggcgaagg
aaatgtggaggttcaagctgtgacggagtcgtacccatcagtcaccacgcttcagaacaa
tcagagagagcgaaggaacaactcctgtcactcccatcgagacttgaggagtccaagaac
aagatgaacagcatgaaacaggcagcccaggactccaaagaccaggctaaaaatctgcac
gagcggatcaacgagcgactcgacaccttcgaaagagagaagaacaaaaccagggagctg
atccagcaaaccaaagactacctgatggatgagatggttcctattgaagacatcgagaaa
atggccagagctgttctgaacatccagctgccacgatcccctgctcagatcagatcaatg
atcaatgaaatcaataatctgctctcaaacactgcacatgtccaggatgagctgaagaag
ctggaggagcctgtgaggagaaccaaggacctgctgcagaaagctcaggaagtccaggag
aggacaaaggacatggattggacagagatcagcagagacacttatgaagctgagagagct
caggacaaagccaacaatgacctggaaacagccaacagagacagagacacgaccaaagct
caagtccaagatattaaagacaaattgaacaagtttgagacgaatctgatgaataatcga
cctgaagatctgagaaaccaaattgaagccctgaagaagaaaacggaacaaaacagagcg
gtggcccaagaggctcaggaggctgctcagtcagccattaatacgacaatgaatttggac
aatgtgatgacattttttgaggttttgaagcaaagaacctcgaatcagtcggctcagggt
gaagctggagaacggctgaagaagattatagaggaggtggagaacttgaaaagacaaatg
gaggacaaactcagaaatatacaaggtgtggagcagaggatccagcagttgatcagaaga
aaagagaacaaatctgctgaagtttctcagatgttggaaacagttgaatctttacgacag
gaaatctccaaacgagccgaagtttacgcctcctgtacttcataa
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