Hippoglossus hippoglossus (Atlantic halibut): 117762717
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Entry
117762717 CDS
T07778
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117762717 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117762717 (sf3b3)
03041 Spliceosome [BR:
hhip03041
]
117762717 (sf3b3)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117762717 (sf3b3)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117762717 (sf3b3)
Spliceosome [BR:
hhip03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117762717 (sf3b3)
Complex B
117762717 (sf3b3)
Complex C
U2 SnRNP specific factors
117762717 (sf3b3)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117762717 (sf3b3)
TFTC complex
117762717 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
117762717
NCBI-ProteinID:
XP_034443168
LinkDB
All DBs
Position
6:3859585..3882099
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKLQEIVVSRGKILEIIRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVIGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPTDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQCTPRKFVIHPESNNLIVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASIVRLINPIQGTTLDQVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVARDMILNPRSAAGGFIYTYRLTGGGEKLEFVHKTPVEDVPLAIAPFQGRIL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVSSIHTIGQRVIVTDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacatcaccctgcagcgcgccactggcatcacacatgccatccatgga
aacttctcaggaaccaagctgcaggagattgttgtttccaggggaaagatcttggaaata
atacgtccagatgccaacacgggaaaggtgcacactctgctcacagtggaggtgtttggc
atcataaggtctctgatggcattcagactcacaggaggaaccaaagattacattgttatc
ggaagtgacagtggtcgcattgtcatcctggaatatcatccatcaaaaaacatgtttgag
aagatccaccaggaaacattcgggaagagcggatgtcggcgtattgttcccggacagttt
ctggctgtcgacccaaagggcagagccgttatgataggagcaatcgagaaacagaagctg
gtttatattctgaacagagatgcagcagcgaggctgaccatctcctcaccactggaagca
cacaaagcgaacacactggtgtaccacgtagtcggagtcgacgttggctttgagaatccc
atgtttgcgtgcttagaaatggactatgaggaagctgacaacgacccaacaggagaagct
gctgccaacacgcaacagactctcaccttttacgagctggacctcggcttaaatcacgtg
gtccgcaagtacagcgaggctttggaagagcacggaaacttcctcatcaccgttcccggt
ggttccgatgggccgagtggagttctgatctgctcagaaaactacatcacttacaagaat
ttcggagaccagcctgacattcgctgtcctattccacgacgcaggaatgacttggatgac
ccggagcgtggcatgatcttcgtctgctcagccacacacaagaccaagtctatgttcttc
ttcctggcccagacggagcagggagacatcttcaaggttactctggagacagatgaagaa
atggtcacagaaatcaggctgaagtactttgacacgatccccgtggcaacagccatgtgt
gttctgaagactggctttttgttcgtttcttcagagtttggaaaccattacctttaccag
atcgctcacctgggtgatgatgatgaagaacctgagttctcatctgcgatgccactggag
gagggagacaccttcttcttccagcctcgtcccctcaagaaccttgtgctggtggacgaa
caggagaacttatcacccatcatgtcctgtcagattgctgatttggccaatgaagataca
cctcagctgtatgtggcctgcggacgaggacccaggtctactctcagggtccttcgtcac
ggactggaggtttcagagatggctgtgtccgagctgcccggtaaccccaatgctgtgtgg
accgtgcgtagacacgtggaagacgagtttgatgcctacatcattgtgtctttcgtcaac
gccactctggttctgtccatcggagagactgtggaggaagtgacagattctgggtttctg
ggaacaacccccaccctgtcctgctcactgcttggtgaagacgcgttggtgcaggtttac
ccagatggcatccgccacattcgagcagacaagcgtgtgaatgagtggaagactcctggc
aagaaaaccattgtccgctgcgcggtgaaccagcggcaggtggtgatcgccctcactgga
ggggagctggtctactttgagatggacccgtctggccagctgaacgagtacacagagcgg
aaagagatgtccgcagatgtggtttgcatgagcctggcaaacgttccacctggtgagcag
cgctcccggttcctggcggttggactggtcgacaacactgttcgaatcatctctctggac
cctacggactgtctgcagccgttgagtatgcaggcccttcccgcccagccggagagtctc
tgtatcgtagagatgggaggtgtcgagaaacaagatgagcttggagaaaagggaaccatt
ggattcctctacctcaacattggacttcagaacggtgtgctactgagaactgttctggac
ccagtcaccggcgacctgtcagatacacgaacacgctacctggggtcacgacctgtcaaa
ctcttcagagtcaggatgcagggacaggaagctgtgctggcaatgtccagtcgctcttgg
ctcagctactcgtaccagtctcgcttccatctcacccctctgtcatatgagactctggag
tacgcctctggctttgcctccgagcaatgtccagaaggtatagtggccatttccaccaac
acactgagaattttggctttggagaagttgggagccgtcttcaatcaggtggcctttcct
ctgcagtgcactcccagaaagtttgtgatccacccagagagcaataacctcattgtgatc
gagactgaccacaacgcctacacggaggcgaccaaagctcagcggaagcaacagatggct
gaggagatggtggaggctgctggggaggatgaaagggaactggccgctgagatggccgct
gccttcctcaacgagaatctcccggaagccatcttcggttcgcctaaagctggagccggg
cagtgggcctcaatcgtgcgactgatcaaccccatacagggcacaacgttggaccaggtg
cagctggaacagaacgaagcagcgttcagtgttgcagtgtgtcgcttccccaacacagga
gatgactggtatgttctggttggtgtagccagagacatgattctcaaccccagatcggcg
gccggtggctttatctacacctacaggctcactggtggaggggagaagctggagtttgtg
cacaagaccccagtagaagatgtgcctttggccattgctccattccagggacgaattctg
gtgggagttggtaaactcctgagaatctatgacctcggcaaaaagaagctgctgcgcaag
tgtgaaaacaagcacgtacccaacctggtgtctagtatccacaccatcggccagcgagtg
attgtcaccgacgtccaggagagtctgttctgggttcggtatcgacgtaacgagaaccag
ctcattatcttcgccgatgacacgtatccacgctgggtgacgacagcctgtctccttgac
tatgacacaatggcatctgccgacaagtttgggaacatcagcatcgtgcgtcttcccccc
aacaccagcgacgacgtggatgaagaccccacaggaaacaaagccttatgggacagaggc
ctcctcaatggagcatcacagaaggctgaggtgatcgtcaactaccatgtaggtgagacg
gtgttgtctctgcagaaaaccactctgatccccggaggttcagagtccctggtgtacacc
acgctgtctggaggcatcggcatactggtcccattcacctcacatgaggatcatgacttt
ttccagcatttagagatgcacatgcgctcagagttccctccactctgcggtagagaccat
ctcagcttcagatcctactacttcccagtaaagaatgtgattgatggagacctgtgcgag
cagtttaacagcatggaccctcacaagcagaagagtgtggcagaggagctggaccggacc
cccccagaggtctctaagaagctggaggatattcgcacacgttacgccttctaa
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integrated database retrieval system
