Hippoglossus hippoglossus (Atlantic halibut): 117762725
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Entry
117762725 CDS
T07778
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117762725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117762725
03009 Ribosome biogenesis [BR:
hhip03009
]
117762725
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117762725
Spliceosome [BR:
hhip03041
]
Complex A
U2 snRNP components
U2 related factors
117762725
Complex B
117762725
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117762725
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
90S particles
Helicases
117762725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
AAA_29
nSTAND3
T2SSE
Motif
Other DBs
NCBI-GeneID:
117762725
NCBI-ProteinID:
XP_034443186
LinkDB
All DBs
Position
1:18883911..18892010
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDLKPATAP
PIIPAAVPGVIPLKQLLVQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKDNFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDIML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLETKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccggctggatttaggtgacgactactcgtccagtaagaagaggtct
gaggggagagatcgggaccgtgacagagaccgtgaggaccgctccagggacagggaccga
gatagggatcgggaccgggacagagaccgggacagagacctgaaacctgctactgctcca
cctatcatcccggcagctgtgccaggcgtaataccgctcaagcagctgttggtgcagcag
cagatcaatccgttcaccaacctaccgcacacaccacgtttctatgagatcctgaagaag
aggttgcagcttccagtgtgggagtacaaggacaacttcagcgatatcatcacacgccat
cagagctttgtccttgtcggagagactggctctgggaagacgacacagatcccacaatgg
tgcgtggacatggtgagaggcttgcctggtccgaagcgagcggtggcctgtactcagccc
agaagagtggccgccatgagtgtggctcagagggtggcagatgaaatggacatcatgctc
ggacaggaagtgggttactctattcgatttgaggactgtagctctgccaagaccatacta
aagtacatgacagacggtatgttgctaagagaggcgatgaatgaccccctgctggagcgt
tacggtgtgatcattctggacgaggcccacgagcgaactctggccacagacatcctgatg
ggagtactcaaggaggtggtgcgtcaaagaccagatctaaaggtgatcgtcatgagtgcc
actctcgatgctgggaagttccaggtttactttgacaactgccccctgctgacgattcct
ggccgtacccaccccgtggagatcttctacacccccgagcctgagcgagattacctcgag
gcagcgatccgcactgtcatccagattcatatgtgcgaggaagatgaaggtgactgcctg
ctcttcctcactggtcaagaggaaattgacgaggcctgcaaacgaatcaagcgtgaggtt
gatgaccttggacctgaagttggggacatcaaaatcattccactgtattcgacgctgcct
ccacagcagcagcaaaggatctttgagcctcctcctccaaggaagcccaatggcgcaata
ggaagaaaggtcgtggtgtcaacaaacattgctgaaacttctctaacaatcgatggcgtg
gtgttcgtcattgatcctggattcgccaaacagaaggtgtacaatcctcgaatcagagtg
gagtctttgctcgtcacagccatcagtaaagcttctgcccagcagagggcgggacgagcc
ggcagaacacgtccaggaaagtgtttccgtctctacacggagaaggcctacaaaacagag
atgcaggataacacataccctgagattctacgatccaacctgggctctgttgtgctgcag
ctgaaaaagctcggcattgatgacctggtgcactttgacttcatggatccaccagctcct
gaaaccctgatgagggccctggaactgctgaattacctcgcagcgctcaacgacgatggt
gacctgacggagctgggatccatgatggccgagtttcccctggacccccagctggctaag
atggtcattgccagctgcgagtttaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagccgacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctcaacgtctatcacgcc
ttcaaacaaaaccatgagtcgaaccagtggtgctatgacaacttcgtcaactaccgttca
ctgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctc
ccccgtcggagcacggagttcaccagcagagattattacatcaacatccgccgggcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcacagtg
aaagacaaccaagtggtccaactgcacccatctacagtcctagaccacaagcctgagtgg
gtgctctacaacgaatttgtcctcaccaccaagaactacatccgcacttgcacagacatc
aagcctgagtggctggtgaagattgccccccagtactatgaaatgagtaacttcccacaa
tgtgaagctaaacgacagctggagcgaatcgttgccaaactagagactaaagagtattcc
cagtactga
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