Hippoglossus hippoglossus (Atlantic halibut): 117762804
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Entry
117762804 CDS
T07778
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117762804 (htt)
04131 Membrane trafficking [BR:
hhip04131
]
117762804 (htt)
03029 Mitochondrial biogenesis [BR:
hhip03029
]
117762804 (htt)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117762804 (htt)
Membrane trafficking [BR:
hhip04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117762804 (htt)
Mitochondrial biogenesis [BR:
hhip03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
117762804 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_ECM29
HEAT_EF3_N
DUF6406
Dopey_N
Motif
Other DBs
NCBI-GeneID:
117762804
NCBI-ProteinID:
XP_034443324
LinkDB
All DBs
Position
1:complement(7157581..7190759)
Genome browser
AA seq
3198 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
SPGSRTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELY
KEIKKNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEESVQETLAAA
MPKIMSALGHFANDGEIKLLLKAFVASLKSSSPTIRRTAASSAVSVCQHSRRTSYFYTWL
LNVLLGLLVPVDEEHPTHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVTRKEADVQPTP
EQLLQVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITAGSIQHATVFRQDT
ESRARSGSILELIAGGGSSCSPLLLRKPRGKMLSGEEDGLEDDPERTEVTAGVFTASVVG
AESSSAAQVDIITEQPRSSQHTLQPGDSVDLSASSEQGGGGGGTSASDTPESPNDNEEEM
LSRSSSGGANITPETADYTTPENATPEGGPLGEGGNLLSTNDRSFPPSDSSQTTTEGPDS
AVTPSDVAELVLDGSESQYSGMQIGTLQDEEEEGTAPSSQEEPTEPFLQSALALSKPHLF
EGRGHNRQGSDSSVDRFIPKDEPPEPEPDIKQSRIKGPIGHYTDQGMEPLVHCVRLLSAS
FLLTGQKNGLIPDKEVRVSVKALAVSCVGAAGALHPEAFFNSLYLEPLDGVPAEEQQYIS
DVLCLIDHGDPQIRGATAILCGAIIQAALIKTRFNIHTWLAIVQTSTGNPLSLVDLVPLL
QKTLKDESSVTCKMACSAVRHCIMTVCSSTLSELGLQLLINLLALRDLSYWLVRTELLET
LAEMDFRLINFLERKTENLHKGDHHYTGRLRLQERILNDVVIRLLGDDDPRVRHVAASAV
SRLVPRLFYDCDQGQVDPVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSN
AVSDVTLENNLSRVVTAVSHAFTSSTSRALTFGCCEALCLLASNFPVCTWTTGWHCGYVS
CSSMFNSRSSLNRSRGRALSLSQPSSAPGSSTTSSAQDTERRTLTVGMANMVLSLLSSAW
FPLDLSAHQDALLLSGNLLAAVAPKCMRNPWTGEEEGGSTSGGQNKMEEPWAALSERSLV
AMLEQLFSHLLKVLNICAHVLDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEKEAAEPSA
APMSPKKSNDVSTGRPADSTGSAAVNKSSTLGSFYHLPPYLKLYDVLKATHANYKVTLDL
HSTQEKFGGFLRSTLDVLSQLLELATLHDISKCVEEILGYLKSCFSREPTMATVCVQQLL
KTLFGTNLASQYEGVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLR
NMVQAEQEQDTSGWFDVMQKASNQLRSNIANATRNRGDKNAIHNHIRLFEPLVIKALKQY
TTSTSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPN
IFFFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSN
KADAGKELDTQKEVVVSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVLLP
MIARQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTIPATMASVATIQLWVSGI
LAVLRVLVSQSTEDIVLSRVHELSLSPHLLSCHTIRRLHQQSPFPNDPPAADTLGNQETN
GEAQKVQPEETFARFLLQLVGVLLDDISSREVKVDITEQQHTFYCQQLGTLLMCLIHVFK
SGMFRRITAAASRLLKGEGGSGQTGTEGGLFYPLEGLNSMVQCLITTHPSLVLLWCQVLL
IIDYTNYSWWAEVHQTPRRQSLSCTKLLSPHSSGECEEDKPGSQLAMVNREIVRRGALIL
FCDYVCQNLHDSEHLTWLIVNHVRDLINISHEPPVQDFISAVHRNSSASGLFIQAIQSRC
DNLTTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLA
ETLQNSIAQLPVEELDRIQEYLQTSGLAQRHQRFYSLLDRFRATVADTSSPSPPVTSHPL
DGDPPPAPELVIADKEWYVALVKSQCCLRGDVSLLETTELLTKLPPADLLNIMSCKDFNL
SLLCPCLSIGVQRLARGQGPLLLETALQVTLEQLAAVTGSLPAPHQSFLPPSQPQPYWVQ
LADVYDVADFYPRVLSLCRALSQYLLSVSQLPSSLHIPSDKEHLITTFTCTATEVVVWRL
LQDQLPLSVDLQWALSCLCLSLQQPCVWNKLSTAEYTTHTCSLIYCLRLIISAVAVSPGD
RLLYPAKKKTKAERDAEGDQVDSAQADKIFQWQACEIMGELVEGLQSVLALGHSKNSVFP
AFLTPTLRNIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEFSTTLPEIPVDFLQEKDV
FREFLYRINILGWSNRTQFEETWATLLGVLVTQPITMAQEEETQQEEDLERTQLNVLAVQ
AITSLVLSAMTLPAAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSK
RDNVHTHHPYHAWDPVPSLSAASAAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVW
LGNNITPLREEEWGEDEEDETDTPAPTSPPISPINSRKHRAGVDIHSCSQFLLELYSQWL
IPGSPSNRRTPTILISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYL
VPAICKAAAVLGMDKVIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQL
IPTVSEYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGTEFMAGVIQLCGVM
VSASEDSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLM
LTCMYTAVLASGSDVTGVRGQVDSGSAVAEAVGVTAGHVGFSSGKEKASPASRPDHADPQ
APDSESIIVAMERVSVLFDRIRKGLPSEARVVARILPQFLDDFFPPQDVMNKVIGEFLSN
QQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSAS
TSQWISALLPHVISRMGSSEVVDINLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPGS
PYYQLLGCLQSIHQDTSL
NT seq
9597 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactgatgaaggccttcgagtccctgaagtcctttcagcagcag
cagggaccaccgaccgccgaggagctcgtccagaggcagaaaaaggaacaggctactaca
aagaaggacagggtgacccattgtctgacaatatgtgaaaacattgtggctcagtctctg
agtcctgggagcagaacgtctccagagtttcagaaactgctgggcatcgccatggagatg
ttcctgctctgcagcgatgacagcgaatcagatgtccgaatggtagccgacgagtgcctg
aacaaaatcatcaaagcactgatggactccaacctgcccagactgcagcttgagctgtac
aaagaaataaaaaagaacggtgcctctcggagtctgagagcagctctgtggaggtttgct
gagcttgcccacctcatcagaccacagaaatgcagaccctacctggtcaacctgttgccg
tgcctcaccagaatcactaagcggcaggaggagtcggtgcaggagactctggctgcagca
atgcccaagattatgtcagctcttggacactttgccaatgatggcgagatcaagttgctg
ctaaaagcatttgtggccagcctgaagtccagctcaccgaccatcagacggactgcagca
agttcagctgtcagcgtgtgccaacactccagacgcaccagctacttttacacctggctc
cttaatgtgctgctgggactgttggttccagtggatgaggagcaccccacccacttaatc
cttggggtgctgctaactcttcgctacctgatgcctctgctgcagcagcaagtcaatacc
accagcctcaaaggaagctttggagtcacgaggaaggaggcagatgtacagccaacacct
gagcagctgctacaggtgtacgagctgacgctacactacacgcagcactgggatcacaac
gtggtcacagctgctctggagctgctgcagcagatgttcaggacacccccgccagagctt
ctgcacatgctcatcaccgctggcagcattcagcatgccactgtgtttcgccaggacaca
gagagccgtgcacgctctggcagcatcctggagctcattgcagggggagggtcttcctgc
agtccactccttctcaggaaaccgagaggtaagatgctgtcaggagaggaggatggtttg
gaggacgaccctgagaggacagaagtgactgctggtgtctttacagcgtcagtcgttggt
gcagagagctcctctgcagcccaggttgacatcatcactgagcaaccccgctcctcccag
cataccctgcagcctggcgactccgtggacctcagtgcctcctcggagcagggcggaggc
ggtggcggtacatctgcgtcagacacgccagagtcacccaatgacaacgaggaggaaatg
ctgagtcgtagctccagtggtggggccaacatcactccagagacggctgactacaccacg
ccagaaaacgccaccccagagggaggccccctaggagagggtgggaatctgctaagcact
aacgatcgctcattcccacccagcgactcatcccagaccaccacagagggaccggactca
gctgtcactccctcagacgtagcagaactggtgctggacggaagtgagagtcagtactct
gggatgcagatcgggacactacaggatgaggaagaggaaggaacagcaccgtcctcccaa
gaagaaccaacagaaccattcctgcagtcagcactggctctgagcaagcctcatctcttc
gaaggccgaggtcacaaccggcagggttcagacagcagcgtggaccgcttcataccaaag
gatgaacctcctgaacccgaaccagacatcaagcaatcacggataaagggtcctattgga
cattacacagaccaggggatggagccgctggtgcactgtgtacggcttctctctgcttcc
ttcctgctgacaggacaaaagaatggtctgatccccgacaaggaggtgcgagtgagtgtg
aaggccctggcggtcagctgtgtgggagcagcaggagcgctacatcctgaagccttcttt
aattccctctacctggagccgctggacggcgtcccagcagaagagcagcagtatatcagt
gacgtgctgtgtctcattgaccatggggaccctcagatccgaggggccacagccatcctc
tgtggagccattatacaggccgcactcatcaaaactcgtttcaacatacacacctggctg
gccattgtgcagacttcaacaggtaaccctctgtccctggtggacttggtgcctttactc
cagaaaacgctcaaagatgagtcctctgtcacctgcaagatggcttgttctgcagtgagg
cactgcatcatgacagtgtgcagcagtactctgagtgagctcggcttgcaattgttgatc
aacctgctggctctgagggatttatcctattggctcgttcggactgagctattggagacc
ctggctgagatggacttccgattaattaacttcctggagaggaaaacagagaatttgcac
aaaggagatcatcactacactggacggctgcggttgcaggaaagaatcctgaatgatgtg
gtcatccgtcttttaggagatgatgatccaagagtgcggcacgtggctgcgtctgctgtc
agcagactggtcccccggttgttttacgactgtgaccagggccaggtggacccagtggtg
gctattgccagagaccagagttcagtatacctgcagctgcttatgcatgagacacaacca
ccgtcccagttcaccgttagcaccatcacaaggacgtacagaggctacaacctgtccaac
gctgtgtccgatgttacactggagaacaatttgtccagagttgtcacggccgtctcccac
gctttcacctcctctacctccagggctctaacttttggctgttgtgaggccttgtgcctc
ctggcttcaaattttccagtgtgcacttggaccactggctggcactgcggatatgttagc
tgcagtagcatgtttaattcccgctctagcctgaaccgtagcaggggcagggctctcagt
ctgtcccagcccagcagtgctccaggctcttcaaccacctcatcggcacaggacacagag
cggaggactctgaccgtgggaatggccaatatggtcctctccttactctcctccgcctgg
ttcccactcgatctttctgcacatcaggatgcacttttgctctctgggaatctgcttgct
gctgtggctcctaaatgcatgcgcaacccctggacgggagaggaagaaggtggcagcacg
agcggaggccaaaataagatggaggaaccctgggcagcactgtcggagcgctccctggtg
gccatgttggagcaacttttctcccatctgctcaaggtgctcaacatctgtgcccatgtg
ttggacgacacgccacctggaccagcagtgaaggccaccctcccctccctgagcaacacc
ccctccctcagtcctattcgcaggaaaggcaaagagaaggaggctgcggagcccagtgct
gctcctatgagcccaaagaaaagcaatgatgtcagcacagggaggccagcagacagcaca
gggtcggcagctgtgaacaaatcttccacgcttggcagcttctaccacctgccaccctac
ctcaagctctatgatgtcctcaaagctacacatgccaactacaaagtgacgttagacctt
cacagtacccaggagaagtttggaggtttcctgcgttccactttagatgttctgtctcag
ctgttggagctggccacactacacgacatcagcaagtgtgtggaggaaatcttgggctac
ctcaagtcctgcttctcccgagaaccaaccatggctacagtttgtgtccaacagctgtta
aaaaccctgtttggcaccaacctggcctcccagtacgagggggtcctgagtggacccagc
cgttcccagggtaaggctctgcgtctcggctcgtccagcctgcgaccaggtctctaccac
tactgcttcatggcaccgtacacgcacttcacccaggctcttgcagacgctagtctccgc
aacatggtgcaggctgaacaggagcaggacacgtctgggtggtttgatgtaatgcaaaag
gcatccaatcagctgaggtccaacattgcaaatgcaactcgcaacagaggagacaagaac
gccatccacaaccacattcgtctatttgagccacttgtgatcaaagcgttgaagcagtac
acaaccagcacctctgtggccctgcagagacaagtgctggacctgctcgcccagcttgtg
cagctcagagtcaactattgcctgctggactcagatcaggtgttcatcggctttgtcctt
aagcagtttgaatacattgaagtgggacaattcagagattcagaggccatcattccaaac
atctttttcttcctggtgctgttgtcctacgagcgctaccactccaagcagataatcagc
attccaaagatcatccagctttgtgacggcatcatggcaagtggcaggaaagctgtcaca
catgccatcccagcgttgcagccaatagttcatgacctgtttgtcttgaggggctcaaac
aaagccgatgcaggcaaagagctggacacgcagaaagaagtggtggtctccatgttgctc
agactcgtacagcaccatcaggtgttggagatgtttatccttgtgctgcagcagtgtcac
aaagagaatgaggacaagtggaagagactgtccagacagattgctgatgttctactcccc
atgatcgccaggcagcaaatgcatctggactctccggaggctttgggagtgttgaacact
ctttttgagactgtagctccctcttctctcaggcctgtggacatgctgctcaagagtatg
tttaccatcccagccaccatggcatccgtagctactatacagctgtgggtgtctggtatc
ctcgctgtgctcagggtactcgtctcccagtccactgaggacattgtcctgtcgcgagtc
catgagctctccctctccccacatctcctctcctgccacacaatccgccgcctgcatcag
cagagcccctttccgaacgacccgcctgctgctgacacactcggtaaccaggagactaat
ggagaggcacagaaagtccaacctgaggaaacctttgcccggttcctgctgcagctggta
ggagtgttgctggatgatatttcctccagagaagtcaaagtggacattacagagcaacaa
cacaccttctactgccaacagctgggtacactgctcatgtgtctcatacatgtcttcaaa
agtggaatgtttcgcaggatcacagctgcagccagtcgtctcctgaagggcgagggtggc
agtggacagactggcacggagggcggcctcttttatcccctggagggcctgaacagcatg
gtgcagtgcctcatcaccacccacccctccttggtgctcctttggtgccaggtcctcctc
atcattgactacaccaactactcttggtgggctgaggttcaccagacacccaggagacag
agcctctcgtgcacgaagttgctgagccctcactcctcaggggaatgtgaagaagacaaa
cctgggtcccagttagcaatggtcaacagagagatcgtacggaggggagctcttatcctc
ttctgtgactatgtgtgtcagaatctccacgactcggagcatctgacttggctgattgtc
aaccacgtacgtgacctgattaacatttcccatgagcctccggtgcaggacttcatcagc
gctgtacaccggaattcatctgccagtggcctcttcatccaggccattcagtcgcgctgt
gacaacctcaccacgcctaccatgttgaagaagactctgcagtgtttggagggcatccac
ctgagtcagtctggatcgctgctgatgctttatgtagacaagctgctcaatacgcctttc
agagttctggctcgcatggtggacacgctggcgtgtcgcagggtggaaatgctgctagct
gagacactacagaacagtatagctcagttgcctgtggaggaactggacaggatccaggaa
taccttcagaccagtgggctcgctcagaggcatcagaggttctactccctgctggacagg
ttcagagccactgtagctgacacaagcagcccctcccctcctgtgacatcacacccgttg
gatggagatccaccccctgcccctgaactggtgattgcagataaggagtggtacgtggct
ctggtgaagtctcagtgctgtcttcgtggcgatgtgtccctgttggagacgactgaactt
cttaccaaactacctcctgctgatctcttgaacatcatgagctgcaaggatttcaaccta
agcctgctgtgtccatgcctgagtataggcgtgcagcggttagcacgaggtcagggtccg
ctcttgttggagacggccttgcaggtgaccctcgagcaactagcagcggtcaccgggtca
cttcctgcaccacaccagtccttcctgcctccttcccaaccccagccctactgggtacaa
ctggctgatgtgtatgatgtggcagatttctaccctcgcgttttgtcgctctgcagagct
ctgtcccagtacctgctgagtgtgagccagctgccttcctcactacatattccctctgac
aaggagcatctcatcaccactttcacctgcactgccactgaggtggtggtgtggcgtctg
ctccaggatcagttgcccctgagtgtggacctacagtgggctctatcctgcctctgtctg
tccctgcagcagccctgtgtctggaacaagctttccactgcagagtacaccacacacacc
tgctcccttatctactgcttacggctgatcatttctgcagtggctgtgagtcctggggac
cgcttgctgtatcccgcgaagaaaaagactaaggcagaaagagacgctgaaggagaccaa
gtggactcggcacaagctgacaaaattttccagtggcaagcatgtgagatcatgggtgaa
ctggtggaagggctgcagagcgtccttgcccttggtcacagtaaaaacagtgtgttccca
gcttttctcacaccaactctacgcaacattgtcatcagtctgtcccgactgcctctggtt
aacagctacacccgagttcctccactggtttggaaactgggctggtcccctcaaccagga
ggagaattcagcacgacgctacctgagatccctgtggacttcctgcaggagaaggatgtc
ttcagagagtttctctatcgcatcaacatactaggctggagtaacaggactcagtttgag
gagacctgggccactttgctgggggtgctggtcacccaacccatcactatggcccaggag
gaggagacgcagcaggaggaggatttggagcgcacccagttgaatgtgttggcagtacag
gcaatcaccagcctggtgctaagtgccatgaccctgcctgctgctggcaaccctgcagtc
agctgtctggaacagcagccccgcaacaagagcctcaaagccctggaaacaaggtttgga
aggaaacttgcagttatcaggggcgaggtggaaagagagattcaggctcttgtgtccaaa
agagacaatgtccatacacaccacccgtaccacgcatgggaccctgtgccctcactgtct
gcagcctctgcagcaggtacgctgatcagccatgagaagctgctgcttcagatcaataca
gagagggagatgggcaacatggactacaaactggggcaggtctcaatccattcagtgtgg
ttgggtaacaacatcacccctctgagggaggaagaatggggtgaggatgaagaagatgaa
acagacactccagcacccacctctccgccgatatctcctataaactcaaggaagcaccgt
gcaggtgtggacatccattcatgttctcaattcctccttgagctctacagccagtggctg
atccctggctccccgagcaacagaaggactccaaccatcctcataagtgaagtggtccga
tcgctgctggcagtgtcagacctgttcacagagaggaaccagtttgacatgatgttctcc
accctgatggaattgcagaagctccacccgccagaggatgagatcctcaatcaatacctg
gtgccggccatctgcaaagctgcagctgtgttgggcatggacaaagtgatagctgagcct
gtgtgtcgcctgttggagacgaccctgcgcagcacccacttgccgagccgcatgggggcc
ctgcatggagtgctgtatgtgttggagtgtgacctgctagacgacacagccaaacagctc
atccccactgtctccgagtacctgctgtccaacctccgggccatcgctcactgtgtgaac
ctgcataaccagcagcatgtgttggtgatgtgtgctgtggctttctacatgatggagaac
taccctctggatgttggaactgagttcatggctggagttatacagttgtgcggtgtgatg
gtgtctgccagcgaggactccactccctccgtcatatatcactgcgtgttgcgcggcctg
gagcgcctcctgctgtcggagcagttgtcgcgtgtggatggagaagcgctggtgaagctc
agcgtggaccgagtcaacatgccgtcaccgcacagagccatggctgcacttggcctcatg
ctcacctgcatgtacactgcggtgcttgcgtcgggttcagacgtgacaggggttagaggt
caggttgactctggctctgccgtagcggaggcggtgggcgtcacggcgggtcatgttggt
ttctcctcaggcaaggagaaagccagccctgccagtcgccctgaccacgctgaccctcaa
gccccagacagcgagtcgatcattgttgccatggagagggtctctgtgctcttcgacaga
atcaggaagggtttaccaagtgaggctcgtgtagtggccaggattctgccccagtttctg
gatgacttcttcccgccacaggacgtcatgaacaaggtcatcggagagttcctctccaat
cagcagccctacccacagttcatggccactgtcgtgtacaaggttttccagacactccac
gccacaggccagtcgtctatggtgcgagactgggtgctgctgtccttgtccaacttcact
cagaggacaccggttgccatggccatgtggagcctctcctgcttctttgtctctgcctcc
acctctcagtggatctcagccttactgcctcatgtgattagccgaatgggctccagtgaa
gtggtggacatcaacctgttctgcctggttgcaatggatttttaccggcaccagattgac
gaagagctggaccgccgggctttccagtccgtctttgagaccgtggcctcgcccggcagc
ccttattaccagctgctgggctgcctgcagtcaatccaccaggatacatcactgtga
DBGET
integrated database retrieval system
