Hippoglossus hippoglossus (Atlantic halibut): 117763113
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Entry
117763113 CDS
T07778
Symbol
edc4
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117763113 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117763113 (edc4)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117763113 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
117763113 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EDC4L
Nrap_D3
PIN_8
EIF3I
Motif
Other DBs
NCBI-GeneID:
117763113
NCBI-ProteinID:
XP_034443906
LinkDB
All DBs
Position
6:3295825..3318601
Genome browser
AA seq
1391 aa
AA seq
DB search
MASGSDIDIEGATQHLRDILKLDRPSNSADAQSSGAQRKPSFNGELNGLLGAVGLLGSTD
RSTMSDSTAPISTDLCSTQESQIICLSGDDGSTCISITSSNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLSFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQIVIHIRRPDETPLNSHRRLIW
CPFILDDNEENQDDASQTLALLHEDRAEVWDLEVLRANHSSWPVDASDVKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGRQDKPRCLHELQPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSSALPSLKASLDLA
AEYLILTDVQRKVLYVMELRQDMEKGKANFTAVSEFLLTHPVLSFGVRDVAHSRLQHTEV
LPAEEDSESMTTEGVQGPTESKSGIQIKLYCVHTKTLQDVQIWFQPNARSSSALFLPHSD
SQDGFAAFSDHLTDQSSDKESGSGSQNDLRKIPSLPAPADFLSNSVSGSGPMPKLMTPDA
FMTPSTSVPASPGSSASSLTIVTATSSNSDSTNRALDDHSHSPNRAESSSSSLTLSASTS
SPRAASAVLLPGLENLQALASPSGLLSLDNSQIMDSPILQNLASPTRARSPDVISSASTA
MSQDMPEIASQTLQLQRGLMSSLEPLPLSALQTDSMASAASALHLLTSPRTANNSLLALE
LGGADGPVSGAIESEPRLSHTPSLLENALSQENPGVGGGSSDGNVSHTPWPAAPDITRET
RNSLRDNGLGDCSREESKVHMNSPYHRRSYHLSQNDSQDTGAEQSDPDDEVASLASSSGN
CGSRSSHRISVKDWKTSPRGSPKLKRKIKKDDGEMAQSRQMDSAQMNVEVQEELLMLLRS
QQRELTELRGQIETMQSSIMAQVDHVLSNHQEQEQRRLERVLAESQNHQQQLQEQLSQHL
SHALTSALTNRMDKVLRDEMKKTLPQTISKSLEPVTGQLNNTIAAKLTAVEVTLKDNVSK
VVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFXQINDSCQTRTQD
YIQQLETHMKNRKQREQEARDPIVGQLQQMIDSFQTSSDQLANNITANVRGEVQHQIQMM
VGNLQETILSHVQRIVKGEVGLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQAN
ILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLSS
NLSTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSLLSKRARR
LMMMLQGLVNH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggctcggatatagacatcgagggggcgacccagcacctccgggacatcctg
aagctcgaccgtcccagcaacagcgccgatgcacaatcaagtggtgctcagaggaagcct
tcttttaatggagagctgaatgggttgctgggggcagtcggccttctgggaagcactgat
aggtccaccatgtcagactctaccgcacccatctccacagacctctgcagcacccaggag
agtcagataatctgcctctccggtgatgatggctccacctgtatctccatcacgtccagc
aatgtggagattgtggcaagtcaagactccagcatcaacagcaaggctcggggcagcaac
aaggtgaaaattcaaccggttgccaagtacgactgggaacacaagtattattatggcaga
ctgatagctgtgtccaactccttcctcgcttatgccatcagaggagccaacaaccatgca
atgattcgtgtcctgagtctgtcttttgctgagcgttccctgctgaagggattcacaggg
gccgtcacagatctggcttttgcccacctcgactcctctctgttgggttgtgtagatgag
gcgggcaacctaatggtctggcaactcacctgcactggaaacaagattctagatcagata
gtgattcatataagacggccagatgaaactcccctgaactcccacagacgcctcatctgg
tgtccgttcattctggatgacaacgaggagaatcaggacgacgccagccagaccttggcc
cttctacatgaagacagggctgaggtgtgggacctggaagtcttgagagccaaccacagc
agttggcctgttgatgcctcagatgtcaaggaaggcctcatcacagtgaagggacatact
cagcgagtcagtgaaggagccttgtctccagacggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatatacatagaaggacgacaggacaagcccagatgt
ctgcacgaattgcaacctcacggaggacgtcccctctcctgccttcttttctgtgacaac
cacaagagacaggacccagaggttcctttctggcgtttcctcataacgggagctgatcag
aaccaggagttgaagctgtggtgcactgtttcctggacctgtttacagaccatcaggttc
tctccagatccgttcaactcctcagctctgccaagtttgaaggccagtctggacctcgct
gctgagtatctcatcctcactgatgtacagaggaaggttttgtatgtgatggagctgcgg
caggacatggagaaagggaaggctaatttcacagctgtgtcagagtttctgctgactcac
cctgtgctcagcttcggagtccgggacgtcgcccacagccgactgcaacacactgaggtc
ctccctgcagaggaggacagtgagagcatgactacagagggcgttcaaggacccacagag
tccaagtctggaatccagattaaactctactgtgttcacactaagactctgcaggatgtc
cagatctggtttcaacccaacgcacgttccagttctgcactgttcctgcctcattctgat
tctcaggatggttttgctgctttttcggaccatctcactgaccagagttctgacaaagag
tcaggaagtggatcccagaacgacctgcggaagatcccatctcttcccgctcctgctgac
ttcctgtctaactctgtctctggcagtgggccgatgcccaagctgatgactcctgatgcc
ttcatgacaccaagcacttcggtaccagcgtcacccggcagcagcgccagcagtctgacc
atcgtaacggctaccagcagcaactctgactcaactaacagagctctagacgatcacagt
cacagtcctaacagagctgagagcagcagcagtagtctcacactctctgcctccaccagc
agcccaagagctgcttccgctgtactgctgccaggactggagaacctacaggctttggcg
tcccctagtggtcttctttcacttgacaactcccagatcatggactcgccaatcctgcaa
aatctggcctctccgaccagggcccgctcccctgatgtcatctcctccgcctccacggcc
atgtcccaggacatgccggagatcgcatcccagacgctgcagcttcagcgtggactcatg
tccagcttggagcctttaccactttctgcgcttcagacagacagcatggcatctgctgcc
tctgctctgcacctgctcacctctccacgcacagccaacaacagtcttttagccctggaa
cttggaggtgcagatgggccagtaagtggggctatagagtcagagcctagactcagccac
actccctctttgctggagaatgccttatcgcaggagaaccctggggtaggaggagggtcc
tcagatggaaacgttagccacacaccttggccagctgcacccgacatcaccagagaaacc
aggaacagtctcagggacaacggcctgggagactgttcaagggaagagtcaaaggtgcac
atgaactcaccttaccatcgacgctcgtatcacctctcacagaacgacagtcaggacact
ggtgcagagcagagcgaccctgatgatgaggtggccagcctggcgtcgtcttcaggaaac
tgtggctctcgctcctctcacaggatctctgtgaaggactggaagacgtcaccacgaggt
tcaccaaaactgaagaggaagatcaagaaggatgacggtgaaatggctcagtccaggcaa
atggactcagctcagatgaatgtagaagttcaggaggagctgttgatgctcctgcgtagc
cagcagagggagctgactgagctgcgtggacagatcgaaaccatgcagagctccataatg
gcccaggtcgatcatgtcctgtccaaccaccaggagcaagaacagcgcagactggaacga
gttctggccgagagtcagaatcaccagcagcagcttcaggagcagctcagccagcatctc
agccacgccctcacctccgcgctcaccaacagaatggacaaagtgctacgggatgaaatg
aagaaaaccctcccacaaacaatttcaaagagcctggagcctgtgacaggtcagctgaac
aacacaattgctgccaagctgaccgctgtagaggtcaccctgaaggacaacgtcagcaag
gtggtcaaatccaagaacacgacggatgcaattggtcgagcggcagctgaagcgatgcag
gggccaatccaggccgcatacaaagatgccttccagagcatcgtgctgcccgtgtttgag
agaggctgccagtccatgttcnagcaaatcaacgacagctgtcaaacaaggacccaagac
tacatccagcagctggagactcacatgaagaaccgaaagcagagagagcaggaggcccga
gaccccatcgtgggccagctccaacagatgattgacagcttccaaacctccagtgaccaa
ctggccaataacatcacagctaacgtccgaggcgaagtccagcaccagatccagatgatg
gtgggaaatttgcaggagactatcctcagtcacgttcagcggattgttaaaggggaggtg
ggcctggccatgaaggagcagcaggctgtggtcacctccagcatcatgcaggcgatgagg
tcggctgccggcacgcccgtccccacagcacacctcgactaccagacacagcaggccaac
atcctgcagctcctccagcagggccagctcaaccaggctttccagcaggctctgtcagcc
acagatctgaacctggtgttgtatgtgtgtgagaccatcgactctcagcaggtgtttggt
cagcacccctgccccctgagccagcccgtcctgctgtccctcatccagcagctctcctcc
aacctctccacccgctctgagctcaaaatcagttacctggaggacgcggtgatgaatctg
gaccacggcgacccgctgaccagagaccacatgtcctccgtgttggcccaggtcagaccc
aaactctttgcgttcctgcagcaggacccccacagcctgctcagcaagagggcgcggcgc
ctgatgatgatgctgcagggtctcgtcaaccactag
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integrated database retrieval system
