Hippoglossus hippoglossus (Atlantic halibut): 117763380
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Entry
117763380 CDS
T07778
Symbol
lsp1a
Name
(RefSeq) non-muscle caldesmon
KO
K12327
caldesmon
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
117763380 (lsp1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hhip04812
]
117763380 (lsp1a)
Cytoskeleton proteins [BR:
hhip04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
117763380 (lsp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
117763380
NCBI-ProteinID:
XP_034444343
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Position
6:complement(22989703..23025624)
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AA seq
564 aa
AA seq
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MSNALLRRNSSKQGLQNLMRLTTQRSIEDAEEVERERRRRARESFRRGSSGSTPGESSPE
NETQTEEKMFDSDFKPSSSPSLEEDEGFSDWTQRRELRRQQRLQELGQGGQEDEEENTIN
KAPSVKAAQASATSSSRLQQQEQEGMEKARMEVERTKEREEVAVRAERARREKDGQDEEK
RKREEVMTRRREDVQRPKTEVEKRKEVKVSYTSKVFLQQEPKHNGDATNEEVVSHINSKT
KRSTRRATEPEEAEAILETEQRLEKIRRSLQVKENQDLEQLRHRQAEAEQELEELKRRRE
ERRRIRQEEEHRREEEEQERLAKEEEERRRMKDDIERRRMEAAERMKSLSTSSVDGDEMF
SPFSPKAPTHKITERTESLNRSLKKSNSFKKTQPLILMAKIDDKLEQYAHAVENSQEARA
VKASLTDLPSSPEVVASKKNLFEAGEAWSQSPTKGATSKDTDGLKVGVANLITQWVKGPS
DGSRQSSSKATDVKPGDVMQKKNMWEIIGDSSEGPGQRANKGSPAGKKYKFIVTGHGKYN
KIPMDDKSGGEFMNKQSDLCHGDY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgcactgctgaggagaaactccagcaaacagggtttgcaaaacctgatgagg
ctgacgactcagaggagcatcgaggacgcggaggaggtggagagggaacgtcgtcgtaga
gctcgagagtctttccgacggggcagcagtggttcaacacccggagagtcctctccagag
aacgagacgcagacagaggagaagatgttcgatagcgacttcaagcccagcagctctccc
tctctggaggaggacgaaggcttcagcgactggactcagcgcagagagcttcggaggcag
cagcgcctgcaggagctcggccagggaggccaggaggacgaggaggagaacacgataaac
aaagctccatccgtaaaggccgcccaggcctcggccacatcctccagccgactccagcaa
caggagcaggaagggatggaaaaggccaggatggaggtggagaggacgaaggagcgtgag
gaggtggctgttcgagccgagagggcgaggagggagaaagacggacaggacgaggagaag
aggaagagggaggaggtgatgactaggagaagggaggatgtgcaaaggccaaaaacagaa
gtggagaaaagaaaagaagttaaagtctcctacacatcgaaggttttccttcaacaggag
ccgaaacacaatggagacgcaacaaatgaggaagtggtgtcacacatcaacagcaaaaca
aaaagatctactaggagagctacagagccggaggaggcggaggccatcctggagacggag
cagcgtctggagaagatccgacggagcctccaggtaaaggagaaccaggacctggagcag
ctgagacaccgacaggccgaggccgagcaggagctggaggagctgaagaggagaagggag
gagagacgccgaatcaggcaagaagaggagcaccggagggaggaggaggagcaggaaagg
ctggctaaagaggaggaggagcgtagacgtatgaaggacgacatcgagaggaggaggatg
gaggcagcagagaggatgaagagcctgagcacgtccagcgtggacggggacgagatgttc
agtcccttcagtccaaaagctcccacacacaagatcacagagagaacagagtccctgaac
cgctcactgaagaaaagtaacagctttaagaagacgcagcctctcatactgatggccaag
atcgacgacaagctggagcagtacgctcacgctgtggagaactcacaagaggcgcgagca
gtgaaggcatctctgactgacctgcccagctcacctgaggtcgtcgcctccaagaagaac
ctgtttgaggccggagaggcctggagccagagtcccaccaagggagcaactagcaaggac
actgatggtctgaaggtgggcgtggccaacctgatcacccagtgggtcaaaggcccctct
gatggcagcagacagtcgtccagcaaagcaacagatgtgaagcctggagacgtgatgcag
aagaagaacatgtgggagatcatcggagattcgtcagaaggaccaggtcaaagagccaat
aagggatcaccagctggtaaaaagtataaattcatcgtcactggtcacggcaaatataac
aagatccccatggacgacaagagtggaggagaatttatgaacaaacagtctgatttgtgt
catggagattactga
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