Hippoglossus hippoglossus (Atlantic halibut): 117763394
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Entry
117763394 CDS
T07778
Symbol
nlrc5
Name
(RefSeq) protein NLRC5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hhip04054
]
117763394 (nlrc5)
Pattern recognition receptors [BR:
hhip04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117763394 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
NACHT
LRR_4
NLRC4_HD2
LRR_NXF1-5
NOD2_WH
Atypical_Card
AAA_25
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
117763394
NCBI-ProteinID:
XP_034444368
LinkDB
All DBs
Position
6:3727227..3754590
Genome browser
AA seq
1898 aa
AA seq
DB search
MDEDLDPGDENVNVVLAQESSELFHILSSQSPDVIKKLCQMMPGGATWSVGAQLEAPTRS
SAAGIKDALDYFSTAKAADCRNFLQIMCILCENIPMRLESRLMSAAGYANNVCENSSPSV
TNEESSSSHSELIKRPRIDYWEQYIAAVMILLLRRWERLSEALVKEVQLENVWVNLRTAT
RGRDRPDQTPGPTDRGSRTPEPDGDFGSLESRVTLETFLQGCAGKVTVLVGPAGSGKTLL
TSCLGRQWALGLGPIPSSRLFVLLEFRLLNLLSSPLSLSELLFQHYLPPKGGDEEKRAVV
DYLLSNPEQSCWVLDGYDEFYSKLTRHEVPGEWLDPESPLPVANLISALLYRQLLPGCTV
LVTCRVRDVMDLNDVSDKLGQLMGWDCHQIKEYVDNFFGVKGDSTDRVLGLQAADLLLSS
QHLLSLSYLPALCNICCICLKHLLLEGKESGTTTIHSREEEGGNETRRKGTGLEPRGRGG
REDFATDGTDDRDQPPPTQVLIPATLTQVYLNVLCAFLSRDPDERGKTVKAKTTKSSKSP
QRTVRRLSALGQYRSELCELSRLAWRGLEESKILFLKEDVPHNVLDFAIRTGLLSQVELR
LDNGTPAYCFIHLTIQEFLAALRIMTSNDVSDKQLMKRFSLKTRWTTRSEQRTVFTDSLH
LYVCGLASRHCTQALVQLARASDPAGAQSWVQTRQALVLKLLKNLCLSNTLTGPKILELC
QCVQESQEHKLAKEVVGTRFTLELRNIQLLPKDIDALAFVVNSVGDRGIGLDFGSCSMEP
ECLDVLPRCQFIHHLSFRRRKYGDRFAEKLSSILPEFTTLRKLEFCGSSLTSTGAARLAS
ALQKCPDISEINFSDNNLKDEGIKHVADIFTKLPKLVSVTLSRNKSSLKTVDYLVGKMSS
CLNIQQVHADAKKEVKVTFSQTSDMEGHKKTEATVRLLNQKWNKPEMQKVANSLACCPAL
SVLDLSGGQWNVEILKILAKCLPKFNVANEIILNGSCSSVVDLVVLTALLSHWPAVVELH
IRLQSDPDPVPVSIVFSGGSKKPANTKTLCLSCCGLLPTDLTRVWRSLGKSCDLTELDLS
SNCLGNTGLRKLLDVLPRLSNIQEINASNNSVSMEGVVMLADALCSRNNLTEIHISDGGR
EQLILKFCSDQSDDEQQLKMFRIRNSSLRPSDVTTLCRRLIQCGSSLKLDLCHCSLNDGA
IKNLLKVLPKMASLQRLNVSYSITSAAGAVIMVRCLMDIPRVTALELRPQSESFVHFDRV
KAEQVSCRLTNFNLSSDNVEQLFKILQRVPQLSDLDLSSNQLRDEGVRCFVDSLPKLKIN
SFVNLSNNSLTQQGLLDVAGSLCTCGDVAAVEVSLGAEERCLIWFRQYGGCEKTLSVRDG
GLEREHLHRLAEIVSQCPRLTKLEFKNNSLQPEGIEDFVRELNVGQRGCSISFDECWIRA
EKAVSLVCRCLELKKHIQTIRVHQTTLHLFLMKSTGPTSVSLADCAVEGRQLSPLRSIIQ
RCPLLTELDFSHNSLDAEGVESLCSVLPSLPKLTSLSVVSKETCKTVVEKLSEALLHATT
VQCLNLSGHVISDTAAQTMTRILPRLRSLNLSDCSWSAAAGLQLVKALGQCVSLEGLCLD
PVRLDENSRACLAQVLKKIHSIRSLKLNKVAAVGEPSEQNSVFDLLAALEELTLMEEIEL
DGWRMSDRVEQLIRLLPLWTQLRKISLSKNLISDQSGDKLLEALSSCCHLEELYLSSNHL
GDLTAARMALVLPSLTHITVLDISENCIGNEGSVNLSEAMKSMKNLTRIHLTSVGTSELC
AVAAGLAHCPLIQDVGLGWNKCGDDVVLELARVLPSCQNLTRIDLESNRVSVVGVESLVK
ALQSCPALQLIRLWKNDVSSGEAQRLIVKDKRLNFSST
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggaccttgaccctggcgatgaaaatgtaaacgttgtcttggctcaggaatcc
tccgaactgttccacatcctcagcagtcagtcgcccgacgtcataaagaagttgtgccaa
atgatgcccggtggtgcgacgtggagcgttggtgctcagctcgaagcccccactcgctcc
tctgcagcaggtatcaaagatgcgttggactatttcagcacggccaaggccgcggattgc
cgcaacttcctccaaatcatgtgcatcctgtgtgagaatatccccatgcgcctggaatct
aggctaatgtcagcggctggatatgcaaataacgtttgtgaaaattccagccccagtgta
acgaatgaggagtcgtcctcgtcgcattcagagcttatcaaacgcccacggatcgactac
tgggagcagtacattgctgcagtgatgattttactgctgaggaggtgggagcgactgagt
gaggcccttgtgaaggaggtccagctggaaaacgtgtgggtcaacctcaggacggcaacc
agaggcagggacagacctgatcaaaccccgggaccgacagacagagggagcagaacacca
gagcctgatggagattttgggtctttggagtccagagtgacactggagaccttcctccag
ggatgtgcaggaaaagtgacggtcctcgttggcccggctggatcaggaaagactctgctg
acatcttgtttaggtcggcagtgggcactcggtcttggcccaatcccttcatcccgcctg
tttgtcctgttagagtttcgtctgctcaacctcttgtccagccctctctccctgtctgag
ctgctgttccaacactacctccctccaaaagggggcgacgaggaaaagagagccgttgtg
gattacctcctttccaatccagagcaaagctgttgggtgctcgatggctacgatgagttt
tacagcaaactcaccagacacgaggtgccgggagaatggttggacccagaaagccctttg
cctgtcgccaacctcatctcagcattattatatcgtcagcttctcccaggatgcactgtg
ctggtcacctgtcgcgtacgtgatgtcatggatttgaacgacgtatcggataaattgggg
cagctgatgggatgggactgccatcagatcaaggagtatgtggacaacttctttggagtg
aaaggtgactccacagacagagtccttggattgcaggctgcagacctcctcctttccagc
caacacctcctgtccctgtcatacctcccagccctctgcaacatctgctgcatctgtctg
aagcatctgctgctggaaggtaaagagtcaggaacaacaacaatacattccagagaagaa
gagggaggaaacgagacaagaagaaaaggtacaggactggaaccaagaggaagaggagga
agagaagacttcgccaccgatgggacagatgacagagaccagccaccccccacacaagtc
ctgatacccgccactctcacccaggtctacctcaatgttctgtgtgcatttctgagccgt
gaccctgatgaaagaggaaaaactgtcaaagcaaagaccacgaaatcctcaaaatctcca
cagagaactgtccgtcggctatccgctctgggtcagtatcgatcggagttatgtgagcta
agtcgattggcctggagaggtttagaggagagcaagatcctcttcttgaaagaagatgtt
cctcacaatgttttggattttgcaatcaggaccgggctcctctcacaggtggagctcaga
cttgacaacgggacgcctgcctactgtttcattcatctgacaatacaggaatttttggct
gcactcaggatcatgaccagtaacgatgtcagtgacaagcagctcatgaaaagattcagt
ctgaaaactcgttggacgacccggtcagagcagaggacagtcttcactgactctctgcac
ctatacgtgtgtggcctggcttcccgacactgcactcaggccttagttcagttagccagg
gcttctgatccagcaggagcacaaagttgggtccaaacacgacaagcccttgttctgaaa
ctcctgaagaacctatgcctcagcaacaccctgactggacccaagatactggagctatgc
cagtgcgtccaggagagccaggaacacaaactggccaaagaggttgtgggtacaagattc
actctggagctgcgcaacatccagctgttaccgaaggatattgatgctctggcatttgta
gttaactcagtaggtgatagaggtattggtctggactttggatcgtgctcaatggagccg
gagtgtttagatgtcctgccaaggtgtcagttcattcaccacctcagttttcgcaggcgc
aaatatggcgacaggtttgcagagaagttgtcgtccattctgcctgaattcacaaccctg
aggaaactagagttttgtggttccagtctgacttccacaggagcagctcgtttggcttct
gctctgcagaagtgtccagacatctctgaaatcaatttcagtgacaacaacctgaaagac
gaagggatcaaacacgtggctgacatctttaccaaactaccaaaactggtgtctgtcacg
ctgagtcgtaacaaaagctccctgaaaactgtggactatctcgttgggaaaatgtcttcg
tgtttgaacatccagcaggttcacgcagatgcgaagaaagaagtgaaagtaactttctca
caaacctcagatatggagggccataaaaagactgaagcaacagtccgcttgttgaaccag
aaatggaacaagcctgagatgcagaaagttgccaattcattggcttgttgtcctgctctg
tctgtcctggatttgtctggaggccagtggaatgtggaaattctaaagatactggctaag
tgtttgccaaagtttaatgtcgccaacgagatcattctcaacggcagctgctcttcggtg
gtggacttggtggttctgactgctctgctgtctcactggcctgctgtggtcgagcttcac
atcagacttcagtctgatccagatcctgttccggtgtctatagttttctctggagggagc
aaaaagcctgcaaacactaaaacactctgcctcagctgctgtggtctgcttcccacggat
ctgaccagagtgtggaggagtttggggaagtcctgtgatctcactgagctggatttgtcc
agtaactgtttgggaaacacaggtctgaggaagctgctggatgtcctgcctcgtcttagc
aacatccaggaaatcaatgccagtaacaacagcgtcagcatggagggtgtggtgatgttg
gctgatgctttgtgctccaggaacaacttaacagaaatccacatcagcgatggggggagg
gagcagttgatcctgaagttctgctctgaccaaagtgatgacgaacagcagctcaagatg
ttcaggataaggaacagcagcctccggccctctgatgtaaccacactgtgcaggagactg
atccagtgtggctcctccctcaagttagatttgtgtcactgttcgctgaacgacggggcg
atcaagaatctgctcaaggttctaccaaagatggcgtcgctgcagagactcaatgtcagc
tacagcatcacctcagcagccggggcggtgatcatggtccgttgtttgatggacattccg
cgcgtcacagctttagagctcaggcctcagagtgaaagcttcgtccattttgacagagtg
aaggcagagcaagtcagctgcaggttaactaattttaacctgtccagcgacaacgtggag
cagctgtttaagatcctgcagcgggttcctcagctgtcggacctggatttatcgagcaac
caactgagggatgaaggagtgaggtgtttcgttgattctctcccgaagcttaaaatcaac
agctttgtcaatctgagcaacaacagcctgacccagcagggactgctggatgtggccggg
tcactttgtacctgtggtgacgtcgctgctgtggaagtcagtctgggggcagaggagagg
tgtcttatctggttcaggcaatacggaggttgtgaaaaaactctgagtgtcagggacggc
ggtttggaacgtgaacatctgcacagattagcagagattgtgtctcaatgtcctcgtctg
accaaactggagttcaagaacaattcactgcagcctgaggggattgaagactttgtgaga
gagttgaacgtcggtcagagaggatgcagcatcagttttgacgagtgttggatcagagct
gaaaaagccgttagtttggtttgtcgctgtctggagctcaaaaaacacattcagacaatc
agggtgcaccagaccacactgcacctgtttctgatgaaatccacaggaccgacttcagtc
agccttgcagactgtgcagttgagggacgtcagctgtctcctctgaggagcatcatccag
aggtgccctttactcacagagctggatttttcccacaacagcctggatgcagagggagtg
gagtctctctgctctgttctgccctcgctgccgaaactcacctccctcagtgttgtttcc
aaggagacgtgtaagactgtggttgagaagctctcggaggctttgctgcacgctacaact
gttcagtgcctcaatctgtcaggtcatgtgattagtgacacagcagctcagacgatgacc
aggatactcccccgtttacgatcgctcaatttgtctgattgctcgtggtccgcggctgcg
gggctgcagctcgtcaaagcactggggcagtgtgtcagtctggaaggtctttgtctggac
ccggtgcgcctggatgaaaacagcagggcgtgtctggcacaagtactaaagaagatccac
tctatacgcagtctcaagctcaataaggttgctgcagtgggggaaccatcagaacagaac
agtgtgtttgatcttctagctgctctggaagaactgacactaatggaggagatagagttg
gacggctggaggatgtctgatagagtcgaacagctgatcagactccttcctctctggacg
cagctcaggaagatcagtctgtcaaagaacctcatcagcgaccaatcaggagacaagctg
ctggaggctctgagcagctgttgtcatctggaggagctctatctgagtagcaaccacctt
ggtgacctcactgctgccagaatggctcttgttctaccatcgctgacgcacatcacagtg
ctggatatttcagaaaactgtattggaaatgaagggtcggtgaatctgtctgaagcgatg
aagagcatgaagaacctcaccaggattcatttgacttctgttgggacgtctgagctttgt
gctgtagctgcaggtctggctcactgtccactcatacaggacgttggtctgggatggaat
aaatgtggtgatgacgtggtgctggagctcgccagagttttaccctcctgtcagaatctg
accagaatagatctggagtccaaccgtgtgagtgttgttggagtggagtctttggttaaa
gccttgcagtcgtgtccagctctgcagctcatcaggctgtggaagaacgacgtgtcctcc
ggagaagctcagaggctgattgtgaaggacaagaggctgaatttctcttccacctaa
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