Hippoglossus hippoglossus (Atlantic halibut): 117763499
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Entry
117763499 CDS
T07778
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117763499 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hhip03009
]
117763499 (utp4)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117763499 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_Vps41
PROPPIN
DUF7165
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Pep3_Vps18
Beta-prop_TEP1_C
Frtz
DUF1153
Motif
Other DBs
NCBI-GeneID:
117763499
NCBI-ProteinID:
XP_034444560
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Position
6:complement(1632970..1638047)
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AA seq
685 aa
AA seq
DB search
MGEFTVHRVRFFDHTPAAVRALAFHSGSERLALARADGAVEVFNFNDNYFQEKVIPGQDG
RTVEALCWVGQRLFAAGLNGEITEYDLENLRPRYTVEAYGGPVWTISANSQGSLLAVGCE
DGTVKMFEIQEKKIQFQRNLDRQKGRIISLSWHPAGSLIAAGLMDMIRIFDAETGRATHR
LLVDRGVGTSKSQEVVVWSVVFLSDHTIISGDSAGKVQIWDGHTGTLVRTHLVSKWDVLS
LAVSQDESSVIAGTSEGTVIQFQFLSSTVAQQDKEWVRTRTFKNHSHDVRALVHTETAVV
SGGMDTQLVVRPLLDKVEKNTLESSLRKIAFPHRSLVCCAKKAGLLLFQFPEHLELWRLG
EGEGHGRAGESLPVKRKPEKLIHLKRKGDDQICCSALSPCGGWMSYSTVSSVRLYRIQYD
DNNISITKVSKLPKSLCSVHRLCFSPDSSKLFASSNHSSVIVVALNQSECKYLSTLKPKS
GSRQPVHLLFASEDGKWLATANTACEVHVYNLHTMKLHCTVPVYRSCPTAIAVNPVTSNL
VTVHADQQIFEFSLGQKEYTEWSRKLQKQGLHSLWLERDTPVTHVTFNPRNSAHILLHDT
FMFCIIDQSLPLPEAKSPLYNQMMLRSLPEAERVRHSHAFKISKNFQHLLCVSLLEDLSL
VVVERPLLDIMSQLPAPVRQKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttcacggttcatcgtgttcgattcttcgaccacacgcccgctgcggtccgg
gccctggccttccacagcggctcggagcggctggccctggcccgggccgacggagccgtg
gaggtcttcaacttcaacgacaactacttccaggagaaggtgatcccgggacaggacggc
aggacggtggaggctctgtgttgggtgggccagcgtctgttcgctgctggtctgaatggg
gagatcacggagtacgacctggagaacctgaggcccaggtacaccgtggaggcgtacgga
ggaccagtctggaccatcagcgccaacagccagggatccctgctggcggtcggttgtgag
gacgggacagtgaagatgttcgagattcaagagaagaagattcagtttcagagaaacctg
gaccggcagaaaggacgtattatatctctgtcctggcacccggccggttctctgatcgct
gctggtttgatggacatgatcagaatctttgatgctgaaacaggtcgagccacacacaga
ctcctggtggacagaggtgtcgggacgtccaagagccaggaggtggtggtctggagcgtc
gtcttcctgtccgaccacacgatcatcagcggcgactctgcgggaaaagtccagatctgg
gacggacacacgggaacgctggtcagaactcacctggtttctaagtgggacgttctgtct
ctcgctgtttcacaggatgagagcagtgttatcgccgggacatcggagggcacagtcatc
cagttccagttcctctcctccactgtggctcagcaggacaaagagtgggtccgaaccagg
acctttaaaaaccactcgcatgatgtgagggcgctggtccacacagagacggctgtggtt
tctggaggtatggacacccagctggtagtgcgacccctgctggacaaggtggagaagaac
accctggagtcatcactgcgcaaaatagcttttcctcacaggagtctggtttgttgtgca
aagaaagcaggtctgctgcttttccagttccctgagcatttagagctgtggagattagga
gagggtgaaggacacggacgagctggtgaaagtctgcctgtgaagaggaaaccagagaaa
ctgatccacctcaagcggaagggagacgatcagatctgctgcagcgccttgtctccgtgc
ggcggctggatgtcctactccaccgtctccagcgtccgtctgtacagaattcagtacgac
gacaacaacatcagcatcaccaaggtgtccaaattacccaagagcctttgctctgtgcac
cggctctgcttctcccccgactcctccaagctctttgcctcctcgaaccactcctccgtc
atcgtggtcgccctcaaccagtcggagtgcaaatacctttccaccctcaaacccaagtca
ggctccaggcagccggtccacctgctgttcgccagcgaggacgggaagtggctcgcgaca
gcgaacacggcctgtgaggtccacgtctacaacctgcacacgatgaagcttcactgcacg
gttcccgtctaccgctcctgtcccactgcgatcgccgtcaatcctgtgaccagcaacctc
gtcaccgtgcacgccgaccagcagatctttgagttctccctggggcagaaggaatacacc
gagtggagccggaagctgcagaaacaagggcttcactctctgtggctggagcgggacacg
cccgtcacccacgtcaccttcaaccccagaaactcggctcacatcctcctgcacgacacc
ttcatgttctgcatcatcgaccagagtctgccgctccctgaagcgaagagtccgctctac
aaccagatgatgctgaggagtctccccgaggccgagcgggtccgacacagtcacgccttc
aagatcagcaagaacttccagcatctcctgtgtgtgagtttactggaggacctgtctctg
gtggtagtggagcgccccctgctggacatcatgtctcagctgccggctcctgtccggcag
aagaaatttgccacataa
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