KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117763982
Entry
117763982         CDS       T07778                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117763982 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hhip03021]
    117763982 (taf5l)
   03036 Chromosome and associated proteins [BR:hhip03036]
    117763982 (taf5l)
Transcription machinery [BR:hhip03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117763982 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     117763982 (taf5l)
Chromosome and associated proteins [BR:hhip03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     117763982 (taf5l)
    STAGA complex
     117763982 (taf5l)
    TFTC complex
     117763982 (taf5l)
    SAGA complex
     117763982 (taf5l)
    SLIK complex
     117763982 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st RMC1_N Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR19_1st PROPPIN WD_LRWD1 Beta-prop_IP5PC_F Nbas_N PEP5_VPS11_N Beta-prop_NWD2_C Beta-prop_ELP1_1st AAA_3
Other DBs
NCBI-GeneID: 117763982
NCBI-ProteinID: XP_034445253
LinkDB
Position
1:28855774..28860350
AA seq 600 aa
MKRVRTEQIQFAVAQYLKRRQYVESDGSMKGAKLCQSPEEMAASLTVQTESGCANIVSAA
PCQSDPQQYEAQYSRLRSFLSETEIAWAREVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHGAFLQDSEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNGALCRALSTHLQVEVSASRRTDYQLYGAASGTTAAPNSTSSWAGVDGAEGGEGVEVP
AGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFHHTEQMLNTAEVSADSRLLAAGFDS
STVKLWSLRARKLKAKPHPADVSRIHLACDVLEEEVEEEDVCGSEIKTLRGHSGPVFRTC
FLTDSSGLLSCSEDTTVRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYSLRLYAGHLADVDCVKFHPNSSYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASASEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHSGTPADGSSSELVGLYTGNTSNVLKVQFMACNLLLVTGTAQEKAEP
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcactgagcagatccagtttgcagtggctcagtacctgaagaggagg
cagtatgtggagagcgacggctccatgaagggagccaaactctgtcagtcgcccgaggag
atggctgccagcctcacagtgcagacggagtcgggctgtgccaacatcgtctctgctgca
ccctgccagtctgacccacagcagtatgaggctcagtactccaggctgcgctccttcctg
tcagaaacagaaatagcctgggcgagggaggtgagcagcatcctctacccgctgtttgtc
tacctccacctggatatggtgcgctgtggcctgaagggggcagtagatggtttttacagt
cgcttccatggcgcctttcttcaggacagtgaacagcgtgccaccatagagcagctccgc
catgttctcactgctcaggatgttgcagctaatcccaagctgagtgccttcctggagcac
aaatacgtggttcacctgacggagccggcctacagctacctgctgcgttacctgcagagc
gaggacaacggcgccctctgcagggccttgagcacacacctgcaggtggaggtctccgcc
tccaggcgtacagactaccagctgtatggagccgccagtgggacgactgccgccccaaac
tccacctcctcctgggcgggggtagatggggcagagggtggggagggcgtggaggtccct
gctgggatcccacagagcgaggtggccctggaggctctgcaggactgtatcaagaaagtc
cgcgagggccccccctcactcaccactgtgtgtttttacgccttccaccacacggagcag
atgctgaacactgccgaggtgtcggctgacagccggctgctcgccgctggcttcgacagc
tccaccgtgaaactgtggagcctccgagccagaaagctgaaggccaaaccgcatccggct
gacgtgtcgcgcatccacctggcctgcgacgtcctggaggaggaggtggaggaggaagac
gtctgtggtagtgagataaagacgctgcgaggtcacagcggaccagtgttccgtacctgc
ttcctgacggacagctccggcctgttgtcctgctccgaggacacaaccgtccgttactgg
gacctgggcagcttcaccaacacggcgctctaccagggccatgcctacccggtgtgggac
gtggacgtcagcccctgcagcctctactttgccagtggctcccatgaccgcactgctcgc
ctctggacattctcccgcacgtactcgctacgcctctatgccggccatcttgccgacgtt
gactgtgtcaaattccacccaaactccagctacctggccaccggctccacagacaagact
gtcaggctgtggagcacccagcagggggcgtctgttcgtctctttaccggccaccgcggc
ccggtgctgtcgctcgctttctcgcctaacgggaaatatttagcgtctgctagtgaggac
caacgggtgaaactgtgggacttggcgtctgggacgctgttcaaagacttgcggggacac
acggacagcgtcaccagcctgtctttcagcccggacagcagcctggtggcgtcttcgtct
atggacaactccgtccgggtgtgggacattcgtaactcgcacagcgggacgccggccgac
ggctcgtccagcgagctggtgggactgtacacgggaaacaccagcaatgtgctgaaggtc
cagttcatggcctgtaacctgctgctggtgactggaactgcacaagagaaagcagaaccg
tag

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