Hippoglossus hippoglossus (Atlantic halibut): 117764042
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Entry
117764042 CDS
T07778
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117764042 (col2a1a)
04518 Integrin signaling
117764042 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117764042 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117764042 (col2a1a)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117764042 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
117764042
NCBI-ProteinID:
XP_034445346
LinkDB
All DBs
Position
7:21447589..21468710
Genome browser
AA seq
1418 aa
AA seq
DB search
MFGFVDSRTVLLLVASQVVLLAVVRCQEEDDQTFGAKGQKGQPGEIADVVGPKGPPGPVG
PSGEQGVRGEAGAKGDMGNSGPQGRDGEPGIPGNPGPAGPPGPSGLGGNFAAQMAGGFDE
KSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGAAGPMGPRGPSGPSG
KPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHSGLDGAKGENGAAGAKG
ESGSSGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPPGPVGPAGAPGFPG
SPGSKGEAGPTGARGAEGAQGPRGEGGTPGSPGPSGASGNPGTDGIPGSKGSAGGAGIAG
APGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPSGPQGPPGPSGEEG
KRGARGEPGGAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAGPKGATGDNG
RTGESGLPGARGLTGRPGDAGPQGKVGASGTPGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGESGKPGEKGLLGRPGLRGLSGKDGETGASGPSGPAGPAGERGEQGQPGPSGFQGLPG
PSGSPGEAGKPGDQGVSGEGGAPGAVGPRGERGFPGERGGAGSQGLQGPRGIPGTPGTDG
PKGAIGPSGAAGPQGPPGLQGMPGERGAGGISGAKGDRGDNGQKGPEGAPGKDGSRGLSG
PIGPPGPSGPNGAKGETGPGGPTGAGGARGAPGDRGEGGPPGPAGFAGPPGSDGQPGAKG
ELGETGQKGEGGSSGPQGPSGAPGPVGPTGVSGPKGARGAQGAAGATGFPGAAGRVGSPG
PNGNPGSAGPAGSSGKDGPKGARGDSGSPGRQGDSGLRGLAGTQGEKGEAGEDGPPGVDG
PSGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGASGSAGDRGPPGPVGPPGLTG
PSGETGREGTPGSDGPPGRDGSVGVKGERGNTGPGGAPGAPGAPGASGPVGPLGKQGDRG
ESGAQGPAGASGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPPGTAG
DSGSAGPAGPSGSKGPPGPTGPAGKDGSNGMLGPIGPPGPRGRSGESGPSGPPGNAGPPG
PPGPPGPGIDMSAFAGLGHTEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNSQIENL
RSPDGSQKNPARSCRDLKLCHPEWKSGDYWVDPNIGSTADAIKAFCNMETGQTCVYPSIA
KVPKKSWWTSKSKDRKHIWFGETMNGGFHFDYAQEGPAAIAASVQLTFLRLLSNEASQNL
TYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKKHTGRWGKTV
FEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctttgtggattcaaggactgttctgctacttgtagcatcccaggttgtttta
ctcgccgtggtcagatgtcaggaagaagacgaccagacattcggtgctaagggccagaaa
ggccaaccaggagagatcgcagatgttgtaggaccaaaaggaccacccggccctgtgggc
ccatctggtgagcaaggagtgcgtggagaagctggtgctaagggtgatatgggaaattct
ggacctcaaggaagagatggtgagcccggcatccccggaaaccccggaccagctgggcca
cccggaccatcagggctcggagggaactttgctgctcagatggctggaggcttcgacgag
aagtccggaggtgctcagatgggtgtgatgcaaggaccaatgggtcctatgggtcctcgt
ggtccccctggaccttctggagctcctggaccacagggattccaaggtggccccggtgag
gctggagagcctggtgcagcagggccaatgggaccccgtggaccatctggaccttctgga
aaaccaggaagtgatggtgaggctggcaaacctggcaaagctggtgagcgtggacctgca
gggcctcagggcgctcgtggattccctggaactcctggacttcctggaattaaaggacac
agaggtcactctggtctcgatggagctaagggagagaatggtgctgcaggagccaagggc
gagtctggttcctctggagaaaatggcgcccctggaccgatgggaccacgtggtctgcct
ggtgagaggggacgtcctggagcttctggatctgcaggtgcccgtggaaatgatggcttg
cccggtcctgctggtccacctggacctgttggtccagctggagctcccggtttcccagga
tccccaggatccaagggagaagctggtcctactggtgcccgtggagctgagggcgcacag
ggaccacgcggagagggcggtacccctggatctcccggaccttccggagcatcgggtaac
cctggtacagatggtattcctggatctaagggatctgctggtggtgcaggtattgctggt
gctcctggattccccggccctcgtggcccacctggaccacagggagctacaggacctctg
gggccaaagggacagtctggagaccctggtcttcccggattcaaaggagaagctggaccc
aagggagagcttggaccctctgggcctcaaggtccccctggcccaagtggggaagaagga
aagagaggcgccagaggagagcccggaggtgctggaccactcggacctccaggagagaga
ggcgctcccggtaaccgtggtttccctggtcaggatggtcttgctggtgctaagggtgcc
cccggtgaccgtggtgttcctggtgctgctgggcctaaaggtgctactggagacaatgga
cgcacaggagagtccggccttcccggagccagaggtctcactggtcgtcctggagatgct
ggtcctcagggcaaagttggagcctcaggaacccctggtgaggacggtcgccccggccca
cctggtcctcagggagcccgtggacagcccggagtgatgggattccctggaccgaaggga
gccaatggtgaatctggaaagccaggagagaagggtctcctaggtcgtcctggtctgaga
ggtctgtctggaaaagatggtgagactggtgcttctggaccttctggccctgctgggcct
gctggagagagaggagagcaaggacagcctggaccttctggcttccagggtctgcctgga
ccatctggttccccgggagaggctggaaaacctggagaccagggtgtttctggagagggc
ggagctcctggtgctgttggacctagaggtgaacgtggtttccctggtgagaggggtggt
gctggatctcagggtcttcagggacctcgtggaattcctggaacacctggaactgatgga
cccaagggagccattggaccatctggtgctgctggacctcagggaccccccggcctgcag
ggtatgcccggagagagaggagctggtggcatctcaggagccaagggagacagaggtgac
aacggacagaagggacccgagggtgctcctggaaaggatggttctagaggtttgtctggt
cccattggtccacctggaccatctggaccaaacggtgccaagggtgagactggacctggt
ggacctactggtgctggtggtgctcgtggtgctcctggtgaccgtggtgagggcggtcct
cctggacctgctggttttgctggacctcctggttcagatggtcagcctggagccaaggga
gagcttggtgagactggacagaagggagagggtggttcttctggacctcagggaccatct
ggagctcctggacctgtgggacctactggtgtatctggacctaaaggagctcgtggtgct
cagggagctgctggtgccactggattccctggtgctgccggcagagttggatctcctggc
cctaatggtaaccctggctctgctggtcccgctggttcttctggcaaagacggaccaaag
ggtgctcgtggtgacagcggctccccaggaagacagggagactctgggctgcgtggactt
gctggcacacaaggagagaagggagaggccggagaggatggaccacctggtgttgacgga
ccttcaggtcctcagggtctcggtggatcccgtggtattgttggtttgcccggacagcgt
ggagagagaggcttcgccggtctccctggaccttctggagagcctggaaaacagggagct
tctggttccgctggcgaccgtggacctcctggacctgtcggaccccctggacttacagga
ccttctggagagactggtagagagggtacccctggatcagatggaccccctggtagagat
ggatctgttggagtcaagggagagcgaggtaacactggtcctggtggcgcccccggagct
ccaggagcccctggtgcctctggacctgtcggacctctcggaaagcagggagacagagga
gagtctggtgctcaaggacctgcaggagcctctggacccgctggcgctagaggaatggcc
ggaccccaaggacctcgtggagacaagggagaggctggtgagactggagagagaggacag
aagggccaccgtggcttcactggtctgcagggtctccctggacctcctggtaccgctgga
gattctggaagtgctggacctgcaggcccaagcggctctaagggaccacctggacccact
ggacccgctggcaaagatggatctaacggtatgctcggacctattggaccacccggacct
cgtggacgctctggagaatctggtccttctggacctcccggtaacgccgggccccccggt
cctcctggtcctcctggtcctggcatcgacatgtctgcctttgccggtctgggtcataca
gagaagtcccctgatcctctcaggtacatgagggccgatgaggcctccagctccctgagg
cagcacgatgttgaggtcgattccacactcaagtccctcaacagccagattgagaacctg
cgcagccccgacggctcccagaagaacccggctcgctcctgcagggacctgaaactgtgc
caccctgagtggaagagcggtgattactgggttgatcccaacattggaagcaccgccgac
gccatcaaggccttctgcaacatggagactggacagacctgcgtctacccaagcatcgcc
aaggtgcccaagaagagctggtggaccagcaagagcaaggaccgcaaacacatctggttc
ggagagaccatgaatggaggattccactttgactacgctcaggaaggcccagctgccatc
gctgcaagtgtccagctgaccttcctgaggcttctgtccaatgaagcttcccagaatctc
acttaccactgcaagaacagcattgcctacatggaccagaccacaggcaacctgaagaag
gctttgctgctgcagggctccaacgatgtggagatccgcgcagaaggcaacagtcgcttc
acgtacagcgtgttggaggatggctgcaagaaacacacaggccggtggggcaagaccgtc
tttgagtacaaaacacagaagacctcccgtctgccaatcgtagacattgctcctatggac
atcggaggagcggatcaggagtttggagtggatgtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
