Hippoglossus hippoglossus (Atlantic halibut): 117764183
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Entry
117764183 CDS
T07778
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117764183 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117764183 (exosc10)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117764183 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
117764183
NCBI-ProteinID:
XP_034445653
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All DBs
Position
7:12796516..12806100
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AA seq
896 aa
AA seq
DB search
MASSKSNDSTNSGLQDSNAGNNDEEKEELCPGFKDVDAFVKYGLGAVLSATKASAGLPQA
GDEYDFYRSFPGFQEFCESQGDKLLHCMSQIMRHHGCRSHIRDQSKLTGLEERFDLVVDS
NDVILERAGILLDEADGVNRSQQPVMPAGFQPPKIVVSSWNRKGSGSSSRAETFRLLHAK
NVARPQLKFKEKVDNSNTPFIPKIFIKPNAIKPLPSYFTNKQIQKERPEDVDVPAALADF
IHQQRTQKPVEDMFAHPYQYELDHLTTPESLLSKPEPQMYKPITETKCSFIDTLEDLVAL
NEKLCRLSEFAVDLEHHSYRSFLGITSLMQISTRDEDFIIDTLELRGEMYILNEAFTDPS
IVKVFHGSDSDIDWLQRDFGVYVVNLFDTHQASRALNMARHSLDHLLKHFCNVDSDKRYQ
LADWRIRPLPDEMFQYARTDTHYLLYIYDCVRAQLLDFNHGQPGLLQSVWNKSKDISLKR
YLKPIYTEESYLELQRKQKKLFNTQQLTAFRLLFAWRNKLARQEDESTGYVLPTHMMIKI
SEELPKEPQGIIACCNPVPPVVRQQSNELHLLVQQAREMPLLKAEIAAQKSKGLTTIKKP
EVTLFGPHDTSRVSESDLPQFSPNELPVKKGMLFSEDEHQMDDDDDQRTCGLMASAKITL
FEELETKKDQESLSAPHMKARRIIESFENPFRMYLPTSDVHISKNAKFDPSSKIFEISKR
WKLQSMEQQQKELEAKKKAKQEGKEQAKKANEERNKEKQSYQESLANVITIRQQAAESGK
SVGKKRERVASLVGESTPRPTKKLMKSAEKPEKPEKPEKPPQDVFTPFDYTQSDLKVFAD
PKSKDNTQFDPNRQSHDGKKKRGPKGQKSNFAAGNRSMSYLTGRSDRGFRHNWPKR
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcaaagagtaacgactccacgaacagcggccttcaagacagcaatgcagga
aacaacgacgaggaaaaagaggagctgtgtcccgggttcaaagacgtcgacgccttcgtg
aaatatggattgggtgctgtgctatcagccaccaaggcctccgccggcttgcctcaagct
ggagatgaatatgatttctaccggagcttcccgggcttccaggagttctgtgagagtcaa
ggagataagctcctgcactgcatgagtcagataatgcggcaccatggctgcagatctcac
ataagagaccagagcaagctgacagggctggaggagagatttgacttggtcgtggactca
aatgacgtcatcctcgaaagagcggggattcttcttgatgaagctgatggggtgaataga
agccagcagcctgtcatgcctgcagggtttcagcctcctaagattgttgtttccagctgg
aatcgcaagggttcaggctctagcagtcgtgccgagacattccgactgctccacgccaag
aacgttgcgaggccgcagctgaaattcaaggaaaaagtagacaacagcaacacaccattt
attcccaagatcttcatcaagcccaacgcaataaagccccttccttcttattttaccaac
aaacaaatccaaaaagagagacctgaggatgtcgatgtgccagctgccctggctgatttc
attcaccagcaaagaactcagaaacctgttgaagacatgtttgcacacccataccagtat
gaattggatcatcttacaactccagaaagcctcctgtctaagccagaaccacagatgtac
aaaccaatcaccgagaccaagtgttccttcatcgacaccctggaggatctggtggcactg
aatgagaagctgtgcagattgtctgaatttgccgttgaccttgagcaccattcctacagg
agtttcctcggcatcacctctctgatgcagatctccaccagggatgaggatttcatcatc
gacaccttggagctccgcggcgagatgtacatcctgaacgaagcgttcactgacccgtct
attgtcaaggtgtttcatggttcagactctgacatcgactggctccagagagactttggc
gtgtatgttgtcaaccttttcgacacgcatcaggccagccgggctttaaacatggccaga
cattccctcgaccacctgctcaaacacttctgcaatgtggactccgacaaacgctaccag
ctggccgactggaggattcgccccttgccagatgagatgtttcagtacgcccggacagac
acacactacctcctttacatctatgactgtgtgagggcacagctcttggactttaaccat
gggcagcctggcctgttgcagagtgtctggaacaagagcaaggacatttccctgaagaga
tatttgaaacctatatacacagaggagtcatatttggagctgcagaggaagcagaaaaag
ttgtttaacacccagcagctcactgccttcagactgctgtttgcctggaggaacaagctg
gccaggcaggaagatgaaagcaccggatacgtcctgcccacccacatgatgatcaagata
tctgaggagctgcccaaggagcctcagggcatcattgcctgttgtaaccctgtcccccca
gtggtgaggcagcagagcaatgagctccacttgttagtgcagcaagcacgagaaatgccc
ctccttaaggctgagattgctgctcaaaagtctaaggggctcacaaccataaaaaagcca
gaggtgacattgtttggaccccacgatacctccagggtctccgaaagcgacctcccccaa
ttttctcccaatgaactgcctgttaaaaagggaatgctcttctcagaagatgagcaccaa
atggatgatgatgatgatcagagaacatgtggtctcatggcatcagctaaaatcacactg
tttgaggagctggagacaaagaaagaccaggagtctctttctgctcctcacatgaaagcc
aggcgcatcattgagtcttttgaaaaccctttcagaatgtatttacccaccagtgacgtg
cacatcagcaagaatgccaagtttgacccttcttcaaaaatatttgagattagtaaaaga
tggaaactgcagagtatggaacagcaacagaaggagttggaggccaagaagaaagccaag
caagaaggaaaggaacaggcaaagaaagcgaatgaggaaagaaacaaggagaaacaaagc
taccaggagtctctagcaaacgtcatcaccattcgccaacaagcagcggaatctggaaaa
agtgtcggaaagaaaagggagagggttgccagtttggttggagagtcgactcccagaccg
accaagaaactgatgaaatctgcagagaagccagagaagccagagaagccagagaagcct
ccccaagatgtcttcacacccttcgactacactcagtcagacctcaaagtctttgccgac
cccaaatcaaaggacaacacacagtttgatccaaaccggcaaagccatgatggcaagaaa
aagagaggccccaagggacaaaaatccaattttgcagctggaaacagaagtatgtcgtac
ctgactgggagatctgacaggggattccggcataactggcccaaaagataa
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