KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117764490
Entry
117764490         CDS       T07778                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:hhip01009]
    117764490 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hhip03036]
    117764490 (kdm5c)
Enzymes [BR:hhip01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     117764490 (kdm5c)
Protein phosphatases and associated proteins [BR:hhip01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117764490 (kdm5c)
Chromosome and associated proteins [BR:hhip03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117764490 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD BREX_BrxC_helical PHDvar_NSD DUF3829_2nd
Other DBs
NCBI-GeneID: 117764490
NCBI-ProteinID: XP_034446211
LinkDB
Position
7:complement(23107998..23126225)
AA seq 1591 aa
MEGEEFAPPPECPVFEPTWEEFQDPLGYIAKIRPIAEKSGICKIRPPQDWQPPFSVELDT
FRFTPRIQRLNELEAETRVKLNYLDRIARFWEIQASSLKIPHIERRILDLFGLSKIVTGE
GGFEMVCKERRWARVAQRLGYPPGKNIGSLLRSHYERIVVPFEVFQSGASLPHCKPKHYD
GEEVDKEYKPHSIPLRQSVQPSKIISYGRRANRCQPDGPEDLAPHPLTTGSQLISAPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLVARYKGIRKKDELPQTVTVKENVAAAPVDTSVK
AEPLEPPEKQSEGATSSPQPPPPSITIKSEVKKEEPENGKDNDMEEEDPEKPCTKMTMRL
RRNLNNPQCVDSFVCRMCGRGDDDEKLLLCDGCDDNYHTHCLLPPLTDPPKGNWRCPKCV
AEECKKPAEAFGFEQATREYTLQSFGEMADAFKADYFNMPVHMVPTELVEREFWRLVSSI
EEDVTVEYGADIHSKEFGSGFPMNNGKRKLTTEEEEYARSGWNLNVMPVLDQSLLCHING
DISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAERLEEVMKKK
TPELFEFQPDLLHQLVTIMNPNILMAHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFA
EAVNFCTADWLPAGRSCIEHYRRLRRYCVFSHEELTCKMAASPEKLDLNLAAATHREMFS
IVQEERKLRKGLMERGITEAEREAFELLPDDERQCDKCKTTCFLSALACSKCPERLVCLY
HTQDLCNCPTEKLYLRYRYTLDELLAMLHRLKVRSESFDSWANRVKEALEQEEGNKIGIN
DLEMLKTEASDKKFPDNELLRKLNKVLKEIERCQQTSNELLEKSKSSENKMTLAELKSLV
ETMNNLPCVMNKLEEMQAVLQTVEDFQSQAQALVSDRDWRRDSPPPERLQRLLEEGSKLP
VVVPECDSLQGLKEQGHWLAEVRRTLGTEGGERQEVTLDVLRILMQAGCSVPQSVSVETA
MAELQELLTIAERWEEKAEICLEQSQKHPLSTLEAIVNEAQLIPVKLPNILSLQGCLTRA
RAWVTDLEEIQNGEHYPCLDDLEGLVAIGRDLPVFMEELRQLELQVASAHSWRDKATKTF
LKKSSQHSLLEVLCPCAKRRERRVGTEALEDILDDSDTNTLGLSAHDLRDPAAIVMAFKE
GEHQEKEALLRLQKLNMCKSGLKASSCKENKENGRWDDRMETDTSSHSENSVKENGNSNH
TSAAPPQSVCVCAGQPRAPQLRCHLCKDWFHGGCVPFPSLLPSSGPLANLLCWWDWEARF
LCPQCQRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAITWQGRAKEALEASELQ
PALQKLQELKETLHSEAEKDEDMEKATEKSSVIVLSDSEGGEGEDGVIDLTADISPKKKT
KESNGTQAGCENGINKKSNVTGVGSLLPLLPLLKGEVVELSPATRNQLEELQLEGDLLEV
SLDQTHIIHRVLQASSVPPKDALHTLIQIELEEQRRNSRSRAKDSKRKRKSHRGGDGAGE
RSLDASESKKTCPLSHSPSPHLPDQTQREIL
NT seq 4776 nt   +upstreamnt  +downstreamnt
atggaaggggaagagtttgcccctcctccggagtgtccagtatttgagccgacatgggag
gagtttcaggatcccctgggctacatcgccaagatacgtccgattgcagagaagtctgga
atctgcaaaattcgacctccacaagattggcagccaccgttttcagtggagctggacacc
tttcgcttcacacctcgcatccaaaggctcaatgagctcgaggcggagaccagagtaaag
cttaattatttggaccgcatcgcccggttttgggaaatccaggcgtcctcgttgaaaatc
ccacatattgaaagacgcatcctcgatcttttcggcctgtcaaagattgtgacgggtgaa
ggaggctttgagatggtctgtaaggagcgccgctgggctcgtgtggcccagaggcttggc
taccctccaggcaagaacatcggctctctgttgcgctcccactacgagaggatcgtcgtc
ccctttgaagtgttccagtcgggtgccagcctgccgcattgcaagccaaagcactatgat
ggtgaagaagtggataaagagtacaagccccactccatccccctgcgacagtcggtgcag
ccatccaaaatcatcagttatgggcgcagagcaaacagatgccagcctgatggtccagag
gatctggccccacatcctctcaccactggctctcaactcatctctgcgcctgaacccaca
gaggaagacatcgagaagaacccagagctgaagaagctacagatctatggcgctggacct
aagatgatggggctcgggctggtcgcgaggtataaaggcataagaaagaaagatgagctg
cctcagactgttaccgtcaaagaaaacgtggcggctgcgcccgttgatacctcagtgaaa
gcagagccactggagcctccagagaagcagagtgaaggggccacatccagtccccagccg
cctccccccagcatcaccattaagtcggaagtgaagaaagaggaaccagagaacgggaaa
gacaacgacatggaggaagaagatccagagaagccgtgcaccaaaatgaccatgaggctt
cggcgcaacctcaacaacccccaatgcgttgattcttttgtgtgtcgaatgtgcggtcgg
ggagatgatgatgagaaactcctgctgtgcgacggctgtgatgataactaccacacccac
tgtctactaccccccctcactgatcctcccaaaggcaactggcgatgtcctaagtgtgtg
gcagaggagtgcaagaagccagcagaagcatttggctttgaacaggctacacgagagtac
actctgcagagttttggggaaatggctgacgccttcaaagcagattacttcaacatgcct
gtccatatggttcccactgagctggtggaaagagagttctggaggttggtgagtagcatc
gaggaagacgtgaccgtggagtacggagcagacatacactccaaagagttcggcagtggc
ttcccaatgaacaatggcaagaggaagctcacaacggaagaggaggaatacgctcgctct
ggctggaacttgaatgtgatgcccgtcctggatcagtcgctcctttgccatattaacgga
gacatctctgggatgaaggtgccgtggctttacgttggcatggtgttctcggctttctgc
tggcacatcgaggatcactggagctactccatcaactacctgcactggggcgaacccaag
acttggtacggagttccctctgtggcagctgagcgacttgaggaggtgatgaagaagaag
acacccgagctgtttgagtttcagcctgacctcctgcaccagctggttaccatcatgaac
cccaatatcctcatggctcatggtgtaccggttgtacgcactaaccagtgtgctggcgag
ttcgtcatcaccttccccagagcctaccacagcggcttcaatcagggatataactttgcc
gaagctgtcaacttctgcactgcggactggctacccgctggccggtcctgtattgagcac
taccgccgtctaaggaggtattgtgtattctcccacgaggagctcacctgtaaaatggct
gccagcccagagaagctagatcttaacctggccgcagccacacaccgggaaatgttcagt
attgttcaggaggagaggaagctgcggaagggactgatggagcggggcatcaccgaagca
gagcgcgaggcatttgagctgctgcctgatgacgagcgacagtgtgataagtgcaagacc
acatgcttcctttctgctttggcgtgttcgaaatgccccgagcggctggtgtgtctctat
cacactcaggatctgtgcaactgccccaccgaaaaactctacctcaggtacagatatacc
ctggacgagttgctggccatgcttcaccggttaaaggtccgatcggagtcttttgattcc
tgggccaacagagtgaaagaggcacttgagcaagaagagggaaacaagataggaattaat
gacctggaaatgctgaagacggaggcgtcggacaaaaagtttccagacaacgaacttctc
cggaaactcaacaaagtccttaaagaaatagagcgctgccagcagacgagtaatgaactc
ctggaaaagtcaaagagcagtgaaaataagatgaccttggcagagctgaagtctttggta
gagacgatgaacaatctgccctgtgtgatgaacaagttggaggaaatgcaggcggtgctg
cagacagtggaggacttccagagccaggctcaagcattggtcagtgaccgggactggagg
agggactcgccgccacctgagcgattgcagagattgttggaggagggcagcaagctgccc
gttgtggtgccagagtgtgattcgcttcagggcctaaaggagcagggccactggctagca
gaggtgcggcgcaccctgggcacagaaggaggcgagaggcaggaggtgacgttggatgtg
ttgaggatcctgatgcaggcaggatgcagtgtgccccagagcgtatctgtggagacggcc
atggcggagcttcaggagctgctcacaatcgcagaacgttgggaggagaaagcagaaatc
tgcctcgaacaaagccaaaaacaccctctctccaccctggaggcaatagtgaatgaggcc
cagcttatcccggtcaagcttccaaacattctatctctacagggctgtctcacacgggca
cgcgcctgggtcacggacctggaggaaatccagaatggggagcattacccgtgtctggat
gacctcgagggcctggtggcgattggaagggatctgccggtcttcatggaggagctgagg
cagctggagctgcaggtggccagcgctcactcctggagggacaaggccaccaagaccttc
ctgaagaagagcagtcagcacagtctgctagaggttttatgtccgtgtgcaaaacggaga
gagaggcgagttgggacggaggcgttggaggatatattggatgattctgacaccaacact
ctgggcctctctgctcatgacctgagggatcctgccgcgattgtgatggctttcaaagag
ggagagcaccaggagaaggaggcactactgaggttacagaaactgaacatgtgtaaatct
ggacttaaggcttcaagttgcaaggagaacaaggagaacgggaggtgggacgaccgcatg
gagacagacacatccagccactcagagaactctgtaaaagagaatggcaacagtaaccac
acctctgccgccccccctcagtcagtgtgtgtgtgcgccgggcagccccgcgcccctcag
ctccgctgccatctgtgtaaggactggttccatggtggctgcgttcctttcccctccctg
ctcccctcctctggaccactggctaacctgctctgctggtgggactgggaagcgcgtttc
ttgtgtccgcagtgccagcggtcacggcgccctcgcctggagactatcctggcgttactt
gtggccctgcagaggctgccggtgcgtctccctgaaggagaggccctgcagtgtctcaca
gagagggccatcacctggcagggccgagctaaagaggcgctggaggcgtccgagctgcag
ccggctcttcagaagctgcaggaactcaaagagactctgcacagtgaagcagagaaagac
gaagacatggaaaaggcgactgaaaagagctccgtcatagttttgtccgattccgaggga
ggggaaggagaggatggagtcatcgatctgacggcagacatttcacctaaaaagaaaacc
aaggaaagcaacggcactcaggctggatgtgaaaatggcatcaacaagaagtcaaacgtt
acaggtgtggggtctctgctgcccctgctgcctttactgaagggcgaggtggtggagctc
tccccagccaccaggaaccagctggaggagctgcagctggagggagatctgttggaggtg
tctctggaccagactcacatcatccaccgggttctccaagcttcctctgtcccacctaaa
gacgcactgcacacactcattcagatcgagctcgaagagcagagacgaaacagccgcagc
cgagccaaggattccaaaaggaagaggaagagccacagaggcggggacggggcaggcgaa
cggtcactggacgcctctgagtcaaagaaaacctgtcccctcagccacagcccctctcct
cacttacctgaccagacccaacgagagattttgtga

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