Hippoglossus hippoglossus (Atlantic halibut): 117764827
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Entry
117764827 CDS
T07778
Symbol
zgc:158828
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117764827 (zgc:158828)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117764827 (zgc:158828)
Spliceosome [BR:
hhip03041
]
Complex C
Other components
Complex C specific factors
117764827 (zgc:158828)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
ABC_tran
AAA_19
Cas3-like_C_2
nSTAND3
ResIII
AAA_30
Flavi_DEAD
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
117764827
NCBI-ProteinID:
XP_034446795
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All DBs
Position
7:17940570..17949594
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AA seq
699 aa
AA seq
DB search
MAAPLSTMKFWKPGAEAPGISEERELNTETSGSPVIFNPHTALSIEKQRQKLPVFKHRNN
ILYLVESFQTVIIVGETGCGKTTQIPQYLLEAGWAAEGKVIGVTQPRRVAAISVANRVAE
ERGALLGHEVGYTIRFDDCSDPQATRIKFLTDGMLVREMMADPLLKKYSVMILDEAHERT
LYTDIAIGLLKKIQRKRRDLRLIVASATLDAKKFHDFFNLNESGDPNKDTCGILTVEGRT
FPVDVFYTVSPVPDYVKATVETVLKIHETEDDGDVLAFLTGQEEVEKVVSLLQEQARSLS
RYGMKKHLRISPMYSGLPYAEQMKVFERAPSSVRKVVVATNIAETSITINGVVFVIDCAF
VKLRAYSPSTGIESLVVTPISKASASQRAGRAGRNRPGKCFRLYTEEDFEKLPASTVPEM
QRTNLAPVILQLKALGIDNVLRFSFLSPPPAQTMVQALELLYALAGLDHYGRLTDPTGLR
MAEFPLSPMFAKMLLESGNFGCSKEIVTIAAMMQIQNIFVTAPNQKKAAAREHRKFAVAE
GDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLLRAVTVREQLRRLMNKFKVPRTSSEGD
PDVILKCIVSGFFANAARIHHSGSYRTLRDDRELQIHPSSVLFGEKPPKWVVFNEVVQTS
KYYMRDVTAVESTWLVELAPHFYKQAKHGSLASKRSRVL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcccctttccacgatgaaattttggaagccgggcgccgaggctccggggatc
tcagaggagcgggagctcaacacggagaccagcggctcgccagtcatcttcaacccgcac
accgcgctctccatcgagaagcagcggcagaagctccccgttttcaagcacagaaacaac
atcttgtacttggtggaaagctttcagacggtcatcatagtcggagagacgggatgtggg
aagacaacacagatacctcagtacctgctggaagctggctgggcggcggaggggaaggtg
atcggagtgacacagccccgacgcgtggctgctatctctgttgctaaccgtgttgcagag
gagaggggggccctgctggggcacgaggtgggctacaccatccgatttgacgactgctct
gatcctcaagccacaaggatcaagttccttacagatggaatgctggtgcgggagatgatg
gctgatcctctcttgaaaaaatacagtgtgatgattctagatgaagcgcacgaacgaacc
ctgtacacagacatagcgattggtctgctgaagaagattcagaggaagcggcgagacctg
cggctgattgtggcctctgccactctggatgccaagaaattccatgacttcttcaacctc
aatgagtctggggatcccaacaaggacacgtgtggcattctgacagtagaaggacgcacg
tttccagtggacgtcttctacactgtcagtcctgtgccagactatgtgaaggccacagtg
gagacggtgctgaagatccatgagacggaggatgacggagatgtcctggcttttcttacc
ggtcaggaagaggtggagaaagtggtgtccctcctgcaggagcaggcgaggtctctgtca
cgatatggcatgaagaaacacctgagaatttcacccatgtactctggtctgccatatgct
gagcagatgaaagtctttgagagggcaccttcctctgttcgcaaggttgtggtggctacc
aacatagctgagacctccatcactataaatggcgttgtgttcgtcatcgactgtgccttt
gtgaagcttcgcgcctacagtccctccactggcatcgagtcgctggtggtcacccccatc
tccaaagcctcagcgagtcagagggccgggagagccggacgaaaccgacctgggaaatgc
tttagactttacacggaggaggactttgagaaactgcctgcctcgactgtgccagagatg
cagcgcaccaatttggcccctgtcatcctgcagctcaaagcattaggcatcgacaatgtg
ctgcgcttcagcttcctatctcctcctcctgctcagaccatggttcaggctctggagctg
ctctacgctctggcaggtctggaccattacggccgtttgacggatcccacgggtttgcgg
atggcggagtttcccctcagccccatgttcgcgaagatgctcctcgagtcaggaaacttc
ggctgctccaaggagattgttaccatagctgcgatgatgcagatccagaatatatttgtg
actgcgcccaatcagaagaaagctgccgcccgagagcacaggaaatttgcagttgctgag
ggagaccacctcaccatgctgaatgtgtacgaagcgttcattaagcaccagaagagctcc
cagtggtgtcaggaacattttctcaactacaagggtctgctgcgggctgtgaccgtacga
gagcagctccggcgtctcatgaacaagtttaaggtgccgcggacttccagtgaaggagat
cctgatgtgatcctgaagtgcattgtgtctggtttttttgctaatgcagcccgcattcac
cattctggctcctacaggactttacgagacgaccgtgagcttcaaattcaccccagctct
gtgcttttcggggagaaacctccaaaatgggttgtcttcaatgaagtggtgcagacatca
aaatactacatgcgcgatgtgactgctgttgagtctacctggttggttgagttggcccct
cacttttacaagcaggccaagcatggttcactggccagcaagagatcccgggtcctgtaa
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