Hippoglossus hippoglossus (Atlantic halibut): 117765058
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Entry
117765058 CDS
T07778
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_2
Motif
Other DBs
NCBI-GeneID:
117765058
NCBI-ProteinID:
XP_034447185
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Position
7:complement(4385785..4423257)
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AA seq
1580 aa
AA seq
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MSSSSSSSSLWLMLCFLLSVLLLLSPGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGYKV
RVKPISEVPQPELMLTTTRGRATVAGLDSSQEYALQILVLNGTTEKLLAKRRFTMEGLRE
EEVIRSGSREHRKKLLPGGSGSGDLDDATEAVLGMPTILYPNLITTAPATTTASPATETP
FEPPDEATEKTAKEKRKRKKDKDRGRSKAENKEEQGTTQGKPAEERPRKTPFPTQPVTGI
SPRKPFECDSNAAADIMMLVDGSWSIGRTNFRRVRDFLEGLVTPFHIGPNNIQIGLTQYS
GDPRTEWHLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEDNMRAEAGARSDTPFFL
VLLTDGKSQDDAIAAAHRLKNAGVEIIAVGVKNADEAELRHVASEPVDLNVYNVNDFPLL
SKLVARLVHILCGRIEDRGISKRMEPAPTDDPVLSYPSPTDLRFSDLGSREVKLHWTNPA
QPVQQYRVVYHSAEGQRPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYENNIGLALRGT
VTTLPLVMPANLEVTPSSFSTLRVSWGATPGATQYMILYSALNHGEPDDAKEEKFSADQT
VVELSGLLSETDYSVTLYALYDEDPSDPVTAVATTFPLPSPVSVYFPMVTHSMLRVSWVP
GAVDVPGHRITYSTNHGSDVKQVEVAGLNSVLVQNLSSLSRYLVSVQSHYPQGLSTALTS
NVTTLKVPSSSDLRVTNFSGSDITVRWEAAAGDVVSYLIKWISLSGGDLRQLRVSGESEV
AILEGVEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSATVSEETAVSLVVNWVP
PNAHVLQYRVSYTALTGAETQDSTVLVPGDEKRVVLESLQPDTRYSILVTAEYRNREGGS
SSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIVIHSVKDKETKEESVDESSS
SHCFTDLEPETLYRISVHSLLGSAEGAAVSILHPTATAPARIPIHPRMYPIHNEVCPEVT
IRNSIVKGFDMMEAFGLTQSAHSSVEGVAAEPFVFNTVPTYTLFRDVQLTQSTKFIHPAG
FSPEHTISIAFRMLQDTPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSLDYRGEVQE
LTFDQPQVYRLFYGSFHKVHLSVSQVSVSLSVDCQRVGERPARPLGTLPTDGFEMLGKLV
KTRGPNSGSAPFQLQSFEIVCNTTWASEDTCCDLPGVRDEESCPAPAYTCSCSSDVPGAA
GSPGPNGKPGPRGEKGEKGEHGQKGEVGPVGKSGFEGGLGLVGSTGPRGMTVHGKAGPPG
TSGEKGDLGRPGVQGLPGPPGPKGEEGIPGPQGIRGIEGNIGSPGLTGPRGFQGMPGYPG
PIGDRGRSGPVGPTGLSGNKGERGEKGEPQSMAMIFQLVTQACEHLVHKEVLKLDMFMND
ISRKPAPIEEPVGPPGEPGIPGPKGPPGVRGNQGNVGQRGRPGRSGYPGEQGQRGIPGGK
GDAGTNVQGPTGLKGFAGPLGESKLGVPGSKGDDGKPGPGGIPGHPGQPGEVGPPGMCDS
SGGCQRVPQQTEDPYYGYEH
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatcatcatcatcatcatctctctggctaatgctgtgtttcctgctcagtgtt
cttctgctgctgtccccaggggtccatggccaaggtcgtctgaaactgacggtcctgtct
gaggacagactgcagatgaaatggaaggaggctgatggacccgttcagggctacaaggtc
cgagtgaaacccatctcagaggtcccacagccagagctgatgttgaccaccacacggggc
cgagctaccgtggcaggactggactccagccaggaatacgccctccaaatcctggtgctc
aatgggaccacagagaaacttctggcaaagagacgattcactatggagggtctgcgggag
gaagaggtgattcgcagtgggagccgagagcatcggaagaagctgttgccaggtgggtct
gggtcaggagacctggacgatgcaacagaggctgtgctgggcatgccgacaattctttat
cccaacctcatcaccactgctcctgctactacgacagcgtccccggctacagaaaccccc
tttgagccccctgacgaggccacagagaaaactgcaaaagagaagaggaagaggaagaaa
gataaagataggggtcggtctaaggcggagaacaaggaggagcaagggacaacacagggt
aaaccagctgaggagagaccccggaagacacccttccctacccagccagttacaggcatt
tctccaaggaaaccgtttgagtgcgacagcaacgcagcggcggacatcatgatgttggtg
gatggctcctggagcatcgggcgcaccaacttcaggcgcgtcagagacttcctggaaggc
cttgtgacaccttttcacatcgggccgaacaacattcagatcggtctcacccagtacagt
ggagatcctcgcactgagtggcatctcaacaacttcaccactaaagatcaactgctggag
gcagtgaggaactttaggtataaaggaggaaacacatttactggccaggcgctgctccac
gtcatggaggataacatgagggccgaggcaggagcaaggtcggacacaccctttttcctg
gttttgttgactgatgggaaatctcaggatgatgccattgctgcggcccacaggctaaag
aatgccggcgtggagatcatcgctgtaggtgtgaagaacgctgatgaagctgagttgaga
catgtggcttcagagcctgtggatctgaacgtctacaatgtcaacgacttccctctgctc
agtaaactggtggcacgactggtccacatcctgtgtgggaggatagaggaccgtggcatt
tcaaaacgaatggagcctgcacccacagacgacccagtgctctcctaccctagtcctact
gatctgcgcttctctgatctgggctcaagagaagtgaagctgcactggaccaatcctgct
cagccagtccaacagtacagggtggtttaccacagtgcagagggtcagagaccacaggag
gtggtactggctggctcagagtccactgtgctactggaaggcctctcctctcagacactg
taccatgtgtccatctttcctgtgtatgaaaacaacattggcctggcgctcagaggaact
gtcactacactgcccctcgtcatgcctgccaacctggaggtgactccttcttctttcagc
acgctgcgtgtaagctggggtgcaacgcctggcgcgacacagtatatgatcctgtactca
gctctcaaccatggagagcctgacgacgccaaagaggagaaattcagtgcagaccagaca
gtggtggagctgtccgggctactgtcggaaacagactactcagtcaccctgtatgctctc
tatgatgaggatcccagcgaccctgtcactgctgtagccaccacattccctctgccgtca
cctgtgagtgtttactttcctatggtgacccatagtatgctgagggtgagctgggtgcct
ggagctgtggatgtccctgggcacagaatcacctacagcaccaaccacggcagtgatgtc
aagcaggtggaggtagcaggactgaactcagtgctggtgcagaatctgtcgtctttgtcc
agatacctggtttcagtgcagtctcactacccacaaggcctttctacagcactcaccagt
aacgtcaccacactgaaggtgccttcatcctcagacctcagggtgactaacttctcaggc
agtgatatcactgtccgctgggaggctgcagccggtgatgtagtgtcctacctcatcaag
tggatctccctcagtggaggagacctgagacagttgagggttagtggcgagagtgaagta
gcgatcctggagggggtggaggacgataaggaataccagatctctctgtctgcactttat
ggagatggagctcagagtgaagctgtggccatacgctacagcaccttgtcaggtggaggc
ccgtccagcgcaacagtctctgaggagactgcggtcagcttggtggtcaactgggtacct
cccaacgctcacgtcctccagtatcgtgtgtcttacactgcactcactggagctgaaaca
caggacagcactgtactggtcccaggtgatgaaaagcgggtggtgctcgagtcattacaa
ccagatacacgttacagcatcctggtcaccgccgagtaccgcaacagagaaggaggcagc
agttcagctcagggaaaaaccaccagtctgcgggtgagcagtgtgagcgtggtcaggtca
gaccactccagcatctgtgtgtcttggagacccgtgtctgctgtcgatggatatcgtatt
gtcatccattctgtcaaagacaaagaaacaaaggaagaaagtgtcgatgagtccagcagc
agtcactgtttcactgatctggaaccagagactctgtatcgcatcagtgtgcactcgctg
ctcggctcagcagagggggctgctgtctccattctccatccaacagccacagctccagcc
agaattcccatccatccccggatgtatccaatccacaacgaagtgtgccctgaagtcacc
atcagaaacagcattgttaaagggtttgacatgatggaagcatttggtctgacacagagc
gctcactcgtccgtggaaggtgtggcagccgagccttttgtcttcaacacggtccccacc
tacaccctgttcagagacgtccaactgacacagagcaccaagtttatccaccctgcaggt
ttctctccagaacacaccatcagcatcgccttccgcatgttgcaggacacacccagggaa
cccttcgctctgtggcagctaactgacaatgacttccagcccaagatgggagtggtgcta
gaccctactacaaagcacctggtgtacttcagtctggattacaggggagaggtgcaggaa
ctgaccttcgaccagccgcaggtctacagactcttctacggcagctttcacaaggttcac
ttgtctgtcagccaggtgagtgtctccctgtctgtggactgccagcgtgtgggggagaga
cctgcccgccctctaggcaccttgcccactgacgggtttgaaatgctgggaaaactggtg
aagaccagaggacccaacagtggatccgccccgttccagctgcagtctttcgagattgtc
tgtaacacaacgtgggcgtcagaggacacctgctgtgacctgcctggagtgagagatgag
gagagctgtcctgcccctgcctacacctgttcctgttcctctgacgtccctggagccgcc
ggttcccctggaccaaatggaaaaccaggtcctcggggagaaaaaggcgagaagggagag
catggccaaaagggggaggtgggtcctgtaggaaaatctggatttgagggaggccttgga
cttgttggcagcacaggaccacgtggcatgactgtccatggaaaagcgggccctccgggt
acaagtggggaaaagggggatcttggccgcccaggagtccagggtttaccgggacctcca
ggcccgaaaggggaagaggggatcccaggcccccagggcatcagggggatcgaaggtaac
atcggttcacctggtctcactggacccaggggtttccagggaatgccaggatacccaggg
cctataggggataggggccgctcaggacctgtgggacctacgggtctgtcaggtaataaa
ggggaacgaggagagaagggggaacctcagtcaatggccatgatcttccaactggtcaca
caggcctgtgaacatctagtgcacaaggaggtgctgaagctcgacatgttcatgaacgat
ataagtcgtaagccagctcctattgaggagccagtggggcccccaggagaaccgggtatc
ccagggccgaaggggccaccaggtgtcaggggtaaccagggtaacgttggtcagaggggg
agacctggcaggtctggatatccaggagaacaggggcagagaggtatacccggagggaaa
ggtgatgcagggaccaatgtccaggggcccacagggctcaaaggatttgcagggcctcta
ggtgagtccaagcttggagtcccaggttccaaaggagatgatggtaaaccaggaccaggg
gggatccctggtcatcctgggcagccaggcgaagttggaccaccgggcatgtgcgacagt
agtggaggctgccaacgagttccccagcaaacagaagacccttattatggctacgagcac
tga
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