Hippoglossus hippoglossus (Atlantic halibut): 117765227
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Entry
117765227 CDS
T07778
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hhip01009
]
117765227 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117765227 (hdac6)
04131 Membrane trafficking [BR:
hhip04131
]
117765227 (hdac6)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117765227 (hdac6)
Enzymes [BR:
hhip01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117765227 (hdac6)
Protein phosphatases and associated proteins [BR:
hhip01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117765227 (hdac6)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117765227 (hdac6)
Membrane trafficking [BR:
hhip04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117765227 (hdac6)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117765227 (hdac6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117765227
NCBI-ProteinID:
XP_034447468
LinkDB
All DBs
Position
7:complement(26723210..26734823)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSSGGSEMKSEPDPPGSGPKSVRRSPRPSPQNEGKETRRGGESLKEMKRRGKVDRSRDQM
EDELNNRLKTLDLSSRSSVSGTGLVYSDIFTHHQNLWEPSHVESPHRVTSIMKELETQEL
LSHCIRVEPREATEDELLLAHMKPYVDMIKSTQTMSESELHTLSEKYDSVYLHPESFKVC
ASAVGSVLQLVDRVMTSELRNGFAVIRPPGHHAQANEPNGFCVFNSVAIAARYAQVKHSA
SRVLIVDWDVHHGQGIQYLFQEDPSVLYFSVHRYEQGSFWPHLAESDGGFVGSGRAEGLT
MNLAWDKTGMTDADYITAFQQLLLPVAYEFQPQLVLVSAGFDAAAGDPKGEMCVSPQCFH
VLTHLLMSLAEGRLVLALEGGYNLQSTAEGVAACVRALLGGACPSLTPPTATSDSALQSL
SRTVSAQYPHWASLQVLGGVSLAEGSVIRAMTDEQSTEWPSSAPSVVTTTGLVYDERMME
HLNLWDRHHPEQPQRIAKIFSKHQQLGLVDRCQRIPARLATEEELTMCHSKQHVKLIKSS
SVMKSRDLHKLGEEFNSIFFNNQSFHSAQLAAGGCFNAVERILRGEVSNGVAIVRPPGHH
AETDSPCGFCFFNTAALAARHAQKLSHPAPLRVLILDWDVHHGNGTQHMFEDDDSVLYIS
LHRYDNGIFFPSSEDAAPNRVGVAKGAGFNVNVAWSGGRMGDSDYLAAFHHVVMPIATEF
NPGLVLVSAGFDAARGDPLGGYHVTPEGYAHLTHLLMSLAGGRVLLVLEGGYNLSSISDS
MALCTSMLLGDPPPSLVTPLPPPHHCAVATIIEVIRHHAPYWRSLRINIPESVRASLPSL
KHRGKRSSKGKGRRSEQSGTDRPPLPPAGAKDLMAEHSLDQLTQGLASLDISHTSVSHTP
ATSTPVGGARSKVRPSPEVTCEGEVKAESSSVAVCEQNQSEDTTLPQTQIVVGDEAAGRA
GAELEAAGACGWSKPQMCVELTCGGGTDESSLYVVDPLSWCPHLDSVKPLPSSGINIYMP
CQDCGSEAENWICLTCYQVLCGRYVNEHMVTHGVVSEHPLVLSFSDLSVWCYRCESYVHN
QVLFEAKNAAHCAKFGEEIPPWS
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaggtggatcagagatgaagtctgaaccggatcccccaggatctggacctaag
tcagtcagaagatctcctcgtccgtcccctcagaatgaaggaaaggagacaagaagagga
ggagagagtctcaaggagatgaagaggagaggaaaggtggatagaagcagagatcagatg
gaggacgagctaaacaacagactgaagacactggacctgtccagcagatcctcagtcagt
ggtactggtcttgtttactctgacatcttcactcatcatcagaacctgtgggaaccaagt
catgtagagagtccacacagagtgacgtccatcatgaaggagctggagacacaagagctg
ctgtctcactgcatcagagtggagcccagagaagctacagaggacgagctgcttctcgct
cacatgaaaccttatgtggacatgataaaatcgactcagacgatgtcagagagtgaacta
cacactctgtctgagaaatacgactctgtttacctgcatcctgagtccttcaaggtgtgt
gcctcggcggtgggttcggtgctacagctggttgatcgggtgatgacctctgaactcagg
aatggattcgctgtcatcagacctccaggtcatcacgctcaggccaacgagccaaacggc
ttctgtgtgttcaacagcgtcgccatcgctgctcgctacgctcaggtcaaacactcagcc
agcagagtgttgatagtggactgggatgtgcatcatggtcaggggatccagtacctgttt
caggaagaccccagtgtcctgtacttcagcgtccacaggtacgagcagggatctttctgg
cctcacctggccgagtctgacggggggttcgtgggcagtggacgagctgaaggactaacc
atgaacctggcctgggacaagacggggatgactgatgctgattacatcactgcttttcaa
caactgttgctgccggtcgcctacgagtttcagcctcagctcgttctggtctctgctgga
ttcgatgctgcagccggagatccaaagggggagatgtgtgtgagtcctcagtgtttccat
gttctgactcacttgttgatgagtttggctgaaggtcgactcgttctggctctcgaggga
ggttataacctgcagtcgacagcagagggcgttgcagcctgtgtcagagctctgctggga
ggagcctgtccttctctgactccgcccactgctacatctgacagtgccttgcagtcgctc
tctcggaccgttagtgctcagtatccacactgggcgagtctgcaggtgcttggaggcgtc
tcattggctgagggcagtgtcatcagagcaatgacggatgagcagagtacggagtggccc
agctccgccccctctgttgtcactacaacaggtctggtttatgatgagaggatgatggag
catctgaacctgtgggaccgacatcacccggagcaaccgcagagaatcgccaagatcttc
tctaaacaccagcagctcggattggtcgaccgctgccagcggataccagcgcgcctagca
acagaggaggagctgaccatgtgtcacagtaagcaacatgtgaagctcattaaatcgtcg
tcggtgatgaagtccagagatcttcataaacttggagaagagtttaattcgattttcttc
aacaaccagagttttcattctgctcagcttgcggccggaggctgttttaacgctgtggag
agaatcctgagaggagaggtgagtaacggcgtggcgatcgtgcgacctcctggacatcac
gcagagacagactctccatgtggcttctgcttctttaacacggcagcgctcgccgctcgc
catgcccagaaactctcccatcctgccccactgagagtcctcatcctggactgggacgtt
caccatggcaacgggacacaacacatgttcgaggacgatgacagcgtcctatacatctcc
ctccatcgctatgacaacgggatattctttccatcatcagaggacgccgccccaaaccga
gtgggtgtggccaaaggggcagggtttaacgtcaacgtggcgtggagcggaggacggatg
ggcgactctgactacctcgctgcttttcatcacgttgtcatgccgatagctaccgagttt
aaccccggtctggtcctggtgtcggccgggttcgatgcagcccggggtgacccgctaggc
ggatatcatgtgacccctgagggatacgcccacctcacacacctgctgatgtcactggcc
ggggggcgggtcctcctcgtactggagggaggttacaacctgtcgtccatctctgactcc
atggcgttgtgcaccagcatgttgctaggagaccctcctccatcccttgtgaccccactc
ccccctcctcatcactgcgctgtggcaacaatcatcgaggtcatccgacaccacgccccc
tactggaggtccttgaggataaacatcccagagtctgtgcgggcgtctctgccctccctg
aagcatcgtgggaaacgtagttcgaaaggaaaaggcagaaggtcagagcagagcggcaca
gacagacccccgctgccccctgcaggagcgaaggacttaatggcggagcacagtcttgac
cagctcactcagggattggccagtttagacatcagtcacacttcagtcagtcacacgcct
gcaacgtccactccagtgggcggggccaggtcgaaggtccggcccagcccggaggtcact
tgtgagggtgaagtaaaggcggagtccagcagtgtagccgtatgtgagcagaaccaatca
gaagacaccacactgccacagactcagattgttgttggagacgaggctgctggaagagcg
ggggcggagcttgaggcagcgggggcgtgtggttggtcgaagcctcagatgtgtgtggag
ctgacgtgtggaggaggaacagacgaatcgtctctgtacgtggtcgaccctctctcctgg
tgtcctcacctggactctgttaagcccctcccctcctcaggtataaacatctacatgccg
tgtcaggactgtggctctgaagctgagaactggatctgtctcacctgctaccaggtgttg
tgtggtcgttatgttaacgaacacatggtgactcacggggtcgtgtctgaacatcctctg
gtcctgagcttctcggatctctctgtgtggtgttaccggtgtgagtcctacgtccacaac
caggttctgtttgaagctaaaaatgctgctcactgtgcgaagtttggagaagagatccct
ccatggagctga
DBGET
integrated database retrieval system
