Hippoglossus hippoglossus (Atlantic halibut): 117765832
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Entry
117765832 CDS
T07778
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117765832
03036 Chromosome and associated proteins [BR:
hhip03036
]
117765832
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117765832
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117765832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
117765832
NCBI-ProteinID:
XP_034448249
LinkDB
All DBs
Position
8:16138390..16175780
Genome browser
AA seq
1884 aa
AA seq
DB search
MEDKKKKKQEEKKKKEAAQKKATEQITKVPDSAKLDPTPPLPPINPSAAPSVAPSSGNGK
RAPSGGQPQTAQQPQTLLQQRYPPREVPPRFRQQEHKQLLKRGQPLPSGSLLLTTTTRPS
TTEPAAAAVPAHSSPSCSSSSTASLPTDLPPQSSQGAQYDNPLWGHLPTNRSATSAASST
NLSGWDQLIIDQKDTEAWPSITLSKSQAPPGGCPLDTDPGRLTSSSSSSSSSSGSSSTSS
SCSTVTMATGANSQTGHFPANHLSSKANSGTSPASHSGTSMLSSQVAANRSWGSGPGPSH
CPPQSSVGNEGKSDSPVGGAGSRGWGSSSSTTNYNLNLNPNANPSAWPMLGHDGAGIGGG
SSGGANTISPPQPTPNLCNQPGPPPAQTSTCTGANTNSNSSGIGSAWGGLMTSDMSEPHP
SPSTNVSFSSEPQNLKTDGPNHTNKQEPSSPIHSLPGWGNAPVGMSSMGQPPKGGPQVNG
EDSSSVWGNNGDSKAPSSKEAPGWNSGWGHGGGGAGNTGGWGDQSRGDWGKQHTEEPQGS
WDTPSSPPQEPQAPQASPWGRAVSTAGASEGSSESMEGHPPCRDSSRDNPAPLLPAQDLD
PRVLCNTGWGQTPVRQHTSWDMIESKRKNDAATESRGSGPTTQNNAQGPSNTSMGPTQRT
DPGSKNDVPGSQGASGWGGSIAATNKPNSGWGEPPNNIKPPGAPSGWGNSPAGGPTTSVP
KNGGQSWREEKSSGWDDSHIKATSQGWGEQQKASHSWGNSGGSNNTGDWGEPEESKKSPT
NPAWEGEAGGWKEKPRGWGMAASGSGISGAGGNGGWGEPVSQRPSGPPQGWAGKPQDGPS
GNSGGGGVGSWGGSNSVKQAAGLSGSKQESSADPTGWEEPSPPSIRRKMEIDDGTSAWGD
PGAYNKAVNLWDKNNPGNSQAKVPTGGNNPPVPNNNHHHSHNHPYHGPPAPLQNHSQNSQ
NPGPTSGPMDPVVQHPPGPSHNRAPLIAQGWGEIPSSHTKSETSWGEPAPAPAPVNMDNG
TSAWNKHTGSCGGWSDGNQDSYGRGNPAMTSASCKPAPKPMQDGWGGGGGGGGEELSLSG
GQWDADEGDMWNSAPSQESNSSCNSWGNNPKKVPQKVKVPAKQEDAWIMNRLIKQLTDMG
FPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGMAGHDYNNGLINKPMSCPRPPLL
SKDPSADPRLPFMDKQMQSGMFGGGGAAQARTMQQTQQPPQPPVPPLSSSQPSLRAQVPQ
FLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQXYQLQLAYQRLQIQQQMLQAQ
RNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQALLMKHQQQQPPPSHSGLHPGGTKST
LDLFPGHPQAPGLPDLQTKEPQSSPNTYSPYSLSGLNPNMNVNCMDVGSLAMKEPPQPQS
RLSQWTHPNSIESLTGNSSSLEPSLGKHGANLGPPGKPPQLEDSYSPYNLMSSSDSPTSP
LVPPDSWGQGKSNNDKMANGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTI
NTNIQDVNRYLLRDRSGGSSPTSSQIEALPPSTDWPVSAYTSSFSLSSPEMDDAGKLSEM
KSTWSSGPISHSQASLSHELWKVPQGPRSSNIAPSRPPPGLTHSKPSSTWGGNSLGLAQG
WSNSYTSAGTTWSTDSSTRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNA
VVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLGVTTSWQATPGSN
QTRMGGTGSGAPHPIGHSPHWNNNNNGGGGLGSGAKTGGELLWGGVQQYSNLWGPPSGEE
GRIMGSPTPINTLLPGDLLSGESM
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagaaaaagaaaaagcaagaagagaagaaaaagaaagaagccgctcagaaa
aaggccacagaacagataaccaaagtgccagactctgccaagctcgatcccacccctcct
cttccccccatcaaccccagtgccgccccgtctgtagccccaagcagtggcaatggcaag
cgcgctccctccggaggtcagccacagacagcacagcagccccagactctgctccagcag
cgctacccacccagagaggtgccccctcgcttccgccagcaggagcacaagcagctgttg
aagaggggtcagcctctgccctctggaagcctgcttctcaccaccacaacacgtcccagc
actactgaacctgcagcagcagctgtacccgcacactcctctccctcctgctcctcttcc
tccacagccagcctgcctacagacctgcccccccagagcagccagggagcccagtatgat
aatcccctctggggacacctgccaactaataggagtgccacaagtgctgcctcttccacc
aatctcagtggttgggatcaactgattattgaccagaaggacacagaggcttggccttct
attaccctcagcaagagccaggcccctcctggaggatgccctttggatactgaccctggt
cgcttgaccagcagcagcagcagcagcagcagcagcagcggcagcagcagtactagtagt
agttgtagtacagttactatggccacaggggccaacagccagacaggccacttccctgcc
aaccaccttagcagcaaggccaacagtggaaccagtcctgccagtcatagtggaaccagc
atgctctctagccaggttgcagccaatcgcagctggggttctggacctggaccctcccat
tgcccccctcagtcctcagtggggaatgaaggaaagagtgacagtccagtggggggagca
ggcagcaggggctggggctcatcatcttccaccaccaactataacttgaacctaaaccct
aatgccaacccatctgcctggcccatgctggggcatgatggagctggcatagggggaggc
agctcagggggagccaacaccatttcacctcctcaacctacaccaaacctctgtaatcag
cctggccctccaccagcccagaccagcacctgtactggagccaacactaacagcaactcc
tctgggattggcagcgcctggggtggtttaatgacctctgacatgtcagagccacacccc
tccccatccacgaatgtgtctttcagttcagaacctcagaaccttaaaactgatggacca
aatcacactaataagcaggaaccgtcaagccctatccacagcttgcctggctggggtaat
gcacctgtagggatgagttcaatgggccaacctccaaaagggggcccgcaggtcaatgga
gaagatagtagctcagtatggggtaacaatggcgactctaaggcaccttcatctaaggag
gcacctggctggaactctggctggggccatggcggaggtggagcaggaaatactggagga
tggggtgaccagtcccgtggagactgggggaagcagcacactgaagagccccagggaagc
tgggatacccccagctctcctccgcaggagccacaggcgccacaggctagtccttggggc
agagctgtgagcacagctggtgccagtgaagggagcagtgaaagcatggagggacatccc
ccatgcagagactcatccagagataatccagctcctctgctgcctgcacaggatctggac
cccagggtgttgtgtaacactggctggggacagacccctgttcgccagcacacctcgtgg
gatatgattgagagtaaacgcaagaatgatgcagccactgaatcacggggctctggccca
accactcaaaacaatgcccaggggccctccaacactagcatgggccccactcagaggact
gaccctgggagcaaaaatgatgtgcctggttctcagggagcttcaggttggggtggaagc
atagcagctaccaacaagcccaactctggttggggagagccacctaacaacattaagccc
ccaggtgcccccagtggctgggggaactctccagcaggaggccccaccaccagtgtaccc
aagaatggtggtcagtcatggagagaggagaagtcaagtgggtgggacgattctcacatc
aaggcaacatcccaaggctggggagagcaacaaaaagcatcccacagctggggcaatagt
ggaggcagcaataacactggtgactggggagaaccagaagagagcaaaaaaagtcccacc
aaccctgcctgggagggcgaggcaggaggctggaaggaaaagccacgaggctggggaatg
gcagcttcaggatcagggatatctggagctggaggaaatggtggctggggagaaccagtt
tcccagcgtcccagtggccctcctcaaggttgggctggcaagcctcaggatgggcccagt
ggtaatagtggaggagggggcgtaggctcttggggtggctcaaactcagtgaagcaagct
gcaggtttgagtggcagtaagcaggagtcctcagctgatcctacaggctgggaagagccc
tccccaccttcaatccgacgtaaaatggagatagatgatgggacctcagcttggggtgac
cctggtgcctacaacaaggcagtcaacttgtgggacaagaataatccaggaaattcccag
gctaaagttcccactggaggcaataatcccccagttccaaacaacaaccatcaccactct
cacaatcacccatatcacgggccacctgcacctttacaaaatcacagtcaaaactctcaa
aacccagggcccaccagtgggcccatggatcctgttgtgcaacacccgcctgggccatct
cacaacagggctcccctgatagctcaaggctggggagaaataccaagctcccacacaaaa
tcggagacctcttggggggaacctgcacctgcacctgctccggtcaacatggacaatggg
acgtctgcctggaacaaacacactgggagctgtggaggctggagtgacggtaaccaggac
agctatggcaggggcaacccagcaatgacgtctgcatcttgcaaacctgcccccaaacct
atgcaagacggatggggaggtggaggtggaggtggaggtgaggagctgagcctgtcaggg
ggtcagtgggatgctgacgagggagacatgtggaatagtgctccctcccaggagagcaac
tcctcctgcaactcttggggcaataatcctaaaaaggtcccacagaaggtgaaggtccca
gcaaagcaggaagatgcctggatcatgaatcgtctcatcaaacagttgacagacatgggc
ttccctagggatccagcagaggaggctctgaagagcaacaacatgaacctggaccaggcc
atgagtgccctgctggagaagaagacggagctggacaagcgggggatggggatggccggc
cacgactacaacaacgggctcatcaacaagcccatgagctgccctcggcccccgcttctt
tccaaagacccctcagcagacccccgcttgcccttcatggataagcagatgcagagtgga
atgtttggcggtggtggagcagcacaagcccggaccatgcagcagacgcagcagcctcct
cagccgccagtgccgcctctcagctcctctcagcctagtctacgtgctcaagtgcctcag
tttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacattggtctg
aatcctgcacttttaacctcaccaataaaccctcaacatatgacccttctgaatcaanct
taccagctgcaactggcataccagcgtttacaaattcagcagcagatgttgcaggcgcag
cgcaatgtttctggtcccattcgacaacaagagcagcaagttgcacgtacaatcaataac
atgcagcagcagatccaacagcaccagcgtcagctggcccaggccctgctgatgaagcat
cagcaacagcagccgcccccctcccactcgggcctgcatcctggtgggaccaaatccacc
ctggatttgtttccaggtcacccccaggctccaggcctccctgacctgcagaccaaagag
ccgcagtcatctcctaacacctacagcccctactctctctctggactgaatccaaacatg
aatgtaaactgcatggatgtgggaagtctggctatgaaggaacccccccagccccaatcg
cgcttgtcacagtggacgcacccaaactccatcgaaagccttactggtaactcctcttct
ctagagcccagcctgggcaagcatggtgccaacttgggtcccccgggtaaacccccacag
ctggaggactcttacagtccctacaacctcatgtccagctcagactctcctaccagcccc
ctggtccccccagacagttggggacagggcaaaagtaacaacgacaagatggccaatggg
accaatatcaactggccgccagagttctgccccggtgttccctggaagggtctgcagaat
atcgaccctgagaatgaccccaacatgacccctggcagtgtccccagtgggcccaccatc
aacaccaatatccaagatgtcaaccgctacctgctacgggacaggagtggaggctcctct
cccacttcatctcagatcgaggctctgcctccctccactgattggccagtcagtgcctac
actagctcgttcagtctgtcgtccccggagatggacgatgcaggtaaactgtcagagatg
aaatctacttggtcttctggccctatctctcatagccaggcctccctgtcccacgagctg
tggaaggtccctcaggggccccggagcagcaatatagccccttcacgtcccccacctggc
ctcacccactccaagccttcctcaacgtgggggggaaactccctgggtctggcccaaggc
tggagcaactcttacacctcagcaggtaccacgtggagtacagacagctccaccaggacc
agtagctggctggttttgaggaacctcactccacagattgatggttcgactctgcgtaca
ctgtgcatgcagcacggccccctcatcacattccacctcaacctaacacagggcaacgct
gtggtgcgttacagctccaaggatgaggctgccaaggctcagaagtccctgcacatgtgc
gtgctcgggaacaccaccatcctggcagagtttgctggggaggaggaagtgaaccgcttc
tttgcacagggccagtcgctcggcgtaacaaccagctggcaggccactccaggctccaat
cagacaaggatgggtgggactgggtccggagcccctcatcctatcggtcactcgccccac
tggaacaacaacaacaacggcggcggtggcctgggaagcggagcaaagacaggcggggag
ttgctttggggtggcgtgcaacagtattctaacctgtggggacccccaagtggagaggag
ggacggatcatggggagtcccacaccaatcaatacgctgctgcctggggacctgctgagt
ggagagtccatgtag
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integrated database retrieval system
