KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117765832
Entry
117765832         CDS       T07778                                 
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hhip03019]
    117765832
   03036 Chromosome and associated proteins [BR:hhip03036]
    117765832
Messenger RNA biogenesis [BR:hhip03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117765832
Chromosome and associated proteins [BR:hhip03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    117765832
SSDB
Motif
Pfam: TNRC6-PABC_bdg M_domain UBA_7 UBA RRM_1 RRM_occluded UBA_NBR1_C
Other DBs
NCBI-GeneID: 117765832
NCBI-ProteinID: XP_034448249
LinkDB
Position
8:16138390..16175780
AA seq 1884 aa
MEDKKKKKQEEKKKKEAAQKKATEQITKVPDSAKLDPTPPLPPINPSAAPSVAPSSGNGK
RAPSGGQPQTAQQPQTLLQQRYPPREVPPRFRQQEHKQLLKRGQPLPSGSLLLTTTTRPS
TTEPAAAAVPAHSSPSCSSSSTASLPTDLPPQSSQGAQYDNPLWGHLPTNRSATSAASST
NLSGWDQLIIDQKDTEAWPSITLSKSQAPPGGCPLDTDPGRLTSSSSSSSSSSGSSSTSS
SCSTVTMATGANSQTGHFPANHLSSKANSGTSPASHSGTSMLSSQVAANRSWGSGPGPSH
CPPQSSVGNEGKSDSPVGGAGSRGWGSSSSTTNYNLNLNPNANPSAWPMLGHDGAGIGGG
SSGGANTISPPQPTPNLCNQPGPPPAQTSTCTGANTNSNSSGIGSAWGGLMTSDMSEPHP
SPSTNVSFSSEPQNLKTDGPNHTNKQEPSSPIHSLPGWGNAPVGMSSMGQPPKGGPQVNG
EDSSSVWGNNGDSKAPSSKEAPGWNSGWGHGGGGAGNTGGWGDQSRGDWGKQHTEEPQGS
WDTPSSPPQEPQAPQASPWGRAVSTAGASEGSSESMEGHPPCRDSSRDNPAPLLPAQDLD
PRVLCNTGWGQTPVRQHTSWDMIESKRKNDAATESRGSGPTTQNNAQGPSNTSMGPTQRT
DPGSKNDVPGSQGASGWGGSIAATNKPNSGWGEPPNNIKPPGAPSGWGNSPAGGPTTSVP
KNGGQSWREEKSSGWDDSHIKATSQGWGEQQKASHSWGNSGGSNNTGDWGEPEESKKSPT
NPAWEGEAGGWKEKPRGWGMAASGSGISGAGGNGGWGEPVSQRPSGPPQGWAGKPQDGPS
GNSGGGGVGSWGGSNSVKQAAGLSGSKQESSADPTGWEEPSPPSIRRKMEIDDGTSAWGD
PGAYNKAVNLWDKNNPGNSQAKVPTGGNNPPVPNNNHHHSHNHPYHGPPAPLQNHSQNSQ
NPGPTSGPMDPVVQHPPGPSHNRAPLIAQGWGEIPSSHTKSETSWGEPAPAPAPVNMDNG
TSAWNKHTGSCGGWSDGNQDSYGRGNPAMTSASCKPAPKPMQDGWGGGGGGGGEELSLSG
GQWDADEGDMWNSAPSQESNSSCNSWGNNPKKVPQKVKVPAKQEDAWIMNRLIKQLTDMG
FPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGMAGHDYNNGLINKPMSCPRPPLL
SKDPSADPRLPFMDKQMQSGMFGGGGAAQARTMQQTQQPPQPPVPPLSSSQPSLRAQVPQ
FLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQXYQLQLAYQRLQIQQQMLQAQ
RNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQALLMKHQQQQPPPSHSGLHPGGTKST
LDLFPGHPQAPGLPDLQTKEPQSSPNTYSPYSLSGLNPNMNVNCMDVGSLAMKEPPQPQS
RLSQWTHPNSIESLTGNSSSLEPSLGKHGANLGPPGKPPQLEDSYSPYNLMSSSDSPTSP
LVPPDSWGQGKSNNDKMANGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTI
NTNIQDVNRYLLRDRSGGSSPTSSQIEALPPSTDWPVSAYTSSFSLSSPEMDDAGKLSEM
KSTWSSGPISHSQASLSHELWKVPQGPRSSNIAPSRPPPGLTHSKPSSTWGGNSLGLAQG
WSNSYTSAGTTWSTDSSTRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNA
VVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLGVTTSWQATPGSN
QTRMGGTGSGAPHPIGHSPHWNNNNNGGGGLGSGAKTGGELLWGGVQQYSNLWGPPSGEE
GRIMGSPTPINTLLPGDLLSGESM
NT seq 5655 nt   +upstreamnt  +downstreamnt
atggaagataagaaaaagaaaaagcaagaagagaagaaaaagaaagaagccgctcagaaa
aaggccacagaacagataaccaaagtgccagactctgccaagctcgatcccacccctcct
cttccccccatcaaccccagtgccgccccgtctgtagccccaagcagtggcaatggcaag
cgcgctccctccggaggtcagccacagacagcacagcagccccagactctgctccagcag
cgctacccacccagagaggtgccccctcgcttccgccagcaggagcacaagcagctgttg
aagaggggtcagcctctgccctctggaagcctgcttctcaccaccacaacacgtcccagc
actactgaacctgcagcagcagctgtacccgcacactcctctccctcctgctcctcttcc
tccacagccagcctgcctacagacctgcccccccagagcagccagggagcccagtatgat
aatcccctctggggacacctgccaactaataggagtgccacaagtgctgcctcttccacc
aatctcagtggttgggatcaactgattattgaccagaaggacacagaggcttggccttct
attaccctcagcaagagccaggcccctcctggaggatgccctttggatactgaccctggt
cgcttgaccagcagcagcagcagcagcagcagcagcagcggcagcagcagtactagtagt
agttgtagtacagttactatggccacaggggccaacagccagacaggccacttccctgcc
aaccaccttagcagcaaggccaacagtggaaccagtcctgccagtcatagtggaaccagc
atgctctctagccaggttgcagccaatcgcagctggggttctggacctggaccctcccat
tgcccccctcagtcctcagtggggaatgaaggaaagagtgacagtccagtggggggagca
ggcagcaggggctggggctcatcatcttccaccaccaactataacttgaacctaaaccct
aatgccaacccatctgcctggcccatgctggggcatgatggagctggcatagggggaggc
agctcagggggagccaacaccatttcacctcctcaacctacaccaaacctctgtaatcag
cctggccctccaccagcccagaccagcacctgtactggagccaacactaacagcaactcc
tctgggattggcagcgcctggggtggtttaatgacctctgacatgtcagagccacacccc
tccccatccacgaatgtgtctttcagttcagaacctcagaaccttaaaactgatggacca
aatcacactaataagcaggaaccgtcaagccctatccacagcttgcctggctggggtaat
gcacctgtagggatgagttcaatgggccaacctccaaaagggggcccgcaggtcaatgga
gaagatagtagctcagtatggggtaacaatggcgactctaaggcaccttcatctaaggag
gcacctggctggaactctggctggggccatggcggaggtggagcaggaaatactggagga
tggggtgaccagtcccgtggagactgggggaagcagcacactgaagagccccagggaagc
tgggatacccccagctctcctccgcaggagccacaggcgccacaggctagtccttggggc
agagctgtgagcacagctggtgccagtgaagggagcagtgaaagcatggagggacatccc
ccatgcagagactcatccagagataatccagctcctctgctgcctgcacaggatctggac
cccagggtgttgtgtaacactggctggggacagacccctgttcgccagcacacctcgtgg
gatatgattgagagtaaacgcaagaatgatgcagccactgaatcacggggctctggccca
accactcaaaacaatgcccaggggccctccaacactagcatgggccccactcagaggact
gaccctgggagcaaaaatgatgtgcctggttctcagggagcttcaggttggggtggaagc
atagcagctaccaacaagcccaactctggttggggagagccacctaacaacattaagccc
ccaggtgcccccagtggctgggggaactctccagcaggaggccccaccaccagtgtaccc
aagaatggtggtcagtcatggagagaggagaagtcaagtgggtgggacgattctcacatc
aaggcaacatcccaaggctggggagagcaacaaaaagcatcccacagctggggcaatagt
ggaggcagcaataacactggtgactggggagaaccagaagagagcaaaaaaagtcccacc
aaccctgcctgggagggcgaggcaggaggctggaaggaaaagccacgaggctggggaatg
gcagcttcaggatcagggatatctggagctggaggaaatggtggctggggagaaccagtt
tcccagcgtcccagtggccctcctcaaggttgggctggcaagcctcaggatgggcccagt
ggtaatagtggaggagggggcgtaggctcttggggtggctcaaactcagtgaagcaagct
gcaggtttgagtggcagtaagcaggagtcctcagctgatcctacaggctgggaagagccc
tccccaccttcaatccgacgtaaaatggagatagatgatgggacctcagcttggggtgac
cctggtgcctacaacaaggcagtcaacttgtgggacaagaataatccaggaaattcccag
gctaaagttcccactggaggcaataatcccccagttccaaacaacaaccatcaccactct
cacaatcacccatatcacgggccacctgcacctttacaaaatcacagtcaaaactctcaa
aacccagggcccaccagtgggcccatggatcctgttgtgcaacacccgcctgggccatct
cacaacagggctcccctgatagctcaaggctggggagaaataccaagctcccacacaaaa
tcggagacctcttggggggaacctgcacctgcacctgctccggtcaacatggacaatggg
acgtctgcctggaacaaacacactgggagctgtggaggctggagtgacggtaaccaggac
agctatggcaggggcaacccagcaatgacgtctgcatcttgcaaacctgcccccaaacct
atgcaagacggatggggaggtggaggtggaggtggaggtgaggagctgagcctgtcaggg
ggtcagtgggatgctgacgagggagacatgtggaatagtgctccctcccaggagagcaac
tcctcctgcaactcttggggcaataatcctaaaaaggtcccacagaaggtgaaggtccca
gcaaagcaggaagatgcctggatcatgaatcgtctcatcaaacagttgacagacatgggc
ttccctagggatccagcagaggaggctctgaagagcaacaacatgaacctggaccaggcc
atgagtgccctgctggagaagaagacggagctggacaagcgggggatggggatggccggc
cacgactacaacaacgggctcatcaacaagcccatgagctgccctcggcccccgcttctt
tccaaagacccctcagcagacccccgcttgcccttcatggataagcagatgcagagtgga
atgtttggcggtggtggagcagcacaagcccggaccatgcagcagacgcagcagcctcct
cagccgccagtgccgcctctcagctcctctcagcctagtctacgtgctcaagtgcctcag
tttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacattggtctg
aatcctgcacttttaacctcaccaataaaccctcaacatatgacccttctgaatcaanct
taccagctgcaactggcataccagcgtttacaaattcagcagcagatgttgcaggcgcag
cgcaatgtttctggtcccattcgacaacaagagcagcaagttgcacgtacaatcaataac
atgcagcagcagatccaacagcaccagcgtcagctggcccaggccctgctgatgaagcat
cagcaacagcagccgcccccctcccactcgggcctgcatcctggtgggaccaaatccacc
ctggatttgtttccaggtcacccccaggctccaggcctccctgacctgcagaccaaagag
ccgcagtcatctcctaacacctacagcccctactctctctctggactgaatccaaacatg
aatgtaaactgcatggatgtgggaagtctggctatgaaggaacccccccagccccaatcg
cgcttgtcacagtggacgcacccaaactccatcgaaagccttactggtaactcctcttct
ctagagcccagcctgggcaagcatggtgccaacttgggtcccccgggtaaacccccacag
ctggaggactcttacagtccctacaacctcatgtccagctcagactctcctaccagcccc
ctggtccccccagacagttggggacagggcaaaagtaacaacgacaagatggccaatggg
accaatatcaactggccgccagagttctgccccggtgttccctggaagggtctgcagaat
atcgaccctgagaatgaccccaacatgacccctggcagtgtccccagtgggcccaccatc
aacaccaatatccaagatgtcaaccgctacctgctacgggacaggagtggaggctcctct
cccacttcatctcagatcgaggctctgcctccctccactgattggccagtcagtgcctac
actagctcgttcagtctgtcgtccccggagatggacgatgcaggtaaactgtcagagatg
aaatctacttggtcttctggccctatctctcatagccaggcctccctgtcccacgagctg
tggaaggtccctcaggggccccggagcagcaatatagccccttcacgtcccccacctggc
ctcacccactccaagccttcctcaacgtgggggggaaactccctgggtctggcccaaggc
tggagcaactcttacacctcagcaggtaccacgtggagtacagacagctccaccaggacc
agtagctggctggttttgaggaacctcactccacagattgatggttcgactctgcgtaca
ctgtgcatgcagcacggccccctcatcacattccacctcaacctaacacagggcaacgct
gtggtgcgttacagctccaaggatgaggctgccaaggctcagaagtccctgcacatgtgc
gtgctcgggaacaccaccatcctggcagagtttgctggggaggaggaagtgaaccgcttc
tttgcacagggccagtcgctcggcgtaacaaccagctggcaggccactccaggctccaat
cagacaaggatgggtgggactgggtccggagcccctcatcctatcggtcactcgccccac
tggaacaacaacaacaacggcggcggtggcctgggaagcggagcaaagacaggcggggag
ttgctttggggtggcgtgcaacagtattctaacctgtggggacccccaagtggagaggag
ggacggatcatggggagtcccacaccaatcaatacgctgctgcctggggacctgctgagt
ggagagtccatgtag

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