Hippoglossus hippoglossus (Atlantic halibut): 117765889
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Entry
117765889 CDS
T07778
Symbol
ciita
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hhip01001
]
117765889 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hhip04054
]
117765889 (ciita)
Enzymes [BR:
hhip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117765889 (ciita)
Protein kinases [BR:
hhip01001
]
Serine/threonine kinases: Other
TAF1 family
117765889 (ciita)
Pattern recognition receptors [BR:
hhip04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117765889 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
NLRC4_HD2
CBFB_NFYA
bCoV_NS7A
Motif
Other DBs
NCBI-GeneID:
117765889
NCBI-ProteinID:
XP_034448361
LinkDB
All DBs
Position
8:18571209..18584253
Genome browser
AA seq
1388 aa
AA seq
DB search
MKTQARCPDAKLEVKTELRVACRTLDLYNLENTDSSLTLDTRGAADSMKGLCYSASDSIT
TTGVNMEPFSVSGAAGNASPVEACADNITATCLEDHLCVRCVADGTTHTTDDLMCVSGDA
QWGTDAGFADVAHLFLTCSAKDSPTKAQDYSSYSEMDQSMTLDNLEQILRTDFYEEDEDE
GRVGSHWGAKMLEVDQDPHDFGDLPDDLSEFLDDEYLLGTDVFFGDPWFNPEELTNFNDV
AVPPEQPCSGGHQQGQTDQFTGIQNKRRKRQRVPRSQRCTDEKKPPSTPKRHRAAGADVE
AKLSPAEAANPTTTPTRFLHLQPPIHFITIPDSKGYQLIPNVRLSPPVIRLRLPSAAATP
TYILVPSASTPCKPQLQPLSPVDAAVVPVQMSSSPPGSLSDTASRAMSPPHTSISSRNTS
SSNESPPPQSSTVLDIPESVKDYIQKVKAHMSLTCPAIEEGVSLTSHYVDVQVSQRETFR
LGKNANRVLDKELIITGDTDRQNSLLGHSQIFGDSNGHNLKRYIVLLXNAGMGKNHPDQE
LCLDWSTDCIPQFDFVFLLDGKTLALKTPIYSLQTLLLNLSSFATSCTKPEEVYAQILAA
SKRVLIIFDGFDELRDYEVLLQTQEKDVITSLQKDSKAEAYTVRQLFSAILQRVLLPGCT
LLLSTRPRGSANQLLRRADSFLEVCGFTPTDVEAYLSQYFTDPALRATALDYLKNCSYLH
LLCWNPGLCRLVCLVLEQSKTLDLLPRTLTGLCHQVLRLKMEKHCKATNSQPDVKTQTPL
QSEEETQTQISGNNQLNVCHKNTPVRKSRARVYTCTRSSNQRARRAKKQVTEGSEVDEEE
MESVGREVDRTEERELLSQLSSLAWEGVKANSSILPKGRTLSARHKAFGLGTGLLLCHPL
RKQLGFSSDEGGGGGEDPKDMGGGEKPDGNRDGGKTEIENVDDGHILLWASPFLQSYLAG
VHLSFSRTVSERTFLQNLPFHSGPKGRRRPQREEFQLTQRFAVGLLFHNSAELQSLHSHT
KAAFRDMVVNRQALVTKHLKSLSHGDLSPAQVLEACHYVYEASFTSFGDGSRGNARLVAH
LAASLPEVLSFHGVRLNPPDVFTVQNILEGGGGFSLDLGDSGIGVSGLRALVGLNNVNSY
RACIADVIALWEQLERSGEEGLLRGAVSKFKIHPLKITQLRHVDHLAQLVNIHVHRRLSS
SCTDSDSILADGVPAVRELHKLEFELGPDRGPLGLSKLWELLPALRNLQHLDLENSKIGD
EGSERLADALESLCSLEILNVSQNCIGDHGLKKLATTLGYLPKLHCLSLYSNVISDEGAE
GLAAILPHMASLTDLDVKYNKLTDVGAQCLGASLRNCQKIKTLRMWNQCIPYGVFERLQQ
QDGRILWH
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaagcacgatgccctgatgcgaagttggaagtgaaaacagagcttagagtt
gcgtgcaggacgctggatttgtacaacttggagaatacggactcaagcttgacactggat
acacggggagccgctgactcaatgaaaggcctctgttattctgcatccgacagcataacg
acgactggagtgaacatggagcccttcagtgtctctggagcggcaggaaatgcttcacct
gttgaggcctgcgcagacaacatcacagccacctgtctggaggaccacctctgtgtccgt
tgtgtcgctgacgggacaacacacacaacagacgacctgatgtgtgtgagtggagacgca
cagtggggcacggatgctggatttgcagatgtggcacatttgtttttaacctgttctgca
aaagactctcctactaaagcacaggattactcatcttactcagaaatggatcagagcatg
acgttagacaacttagaacaaatcttaaggacagatttctacgaggaggatgaggatgag
gggagagtgggttcacactggggtgccaagatgcttgaagtagatcaggacccacatgac
tttggagatctaccagatgatttatctgaattcctcgacgatgaatacctattgggcaca
gacgttttctttggtgatccgtggtttaatcctgaggaactcaccaacttcaatgatgtc
gctgttccgccagagcagccgtgctccggcggccaccagcaggggcagacggaccaattc
accggcatacaaaacaaaaggagaaaaagacagagagttcctcggtcacagcggtgcact
gatgagaagaaaccaccgtccacaccaaaaagacacagagcagcaggcgccgacgtggag
gcaaagctcagtcctgcagaggcagcgaacccaaccaccactcccacaagattccttcac
ctccaaccccccattcatttcatcaccatcccagactctaaaggatatcagctcatcccg
aatgtgaggctctcccctccggttattagacttcgactccccagtgcagccgctacaccc
acatacatattagttccttctgcctcaacaccctgcaaaccccaattgcagccgctctcc
ccggtggatgctgcagtggtgcctgtccaaatgagctcgtcaccaccaggatccctgtcg
gacaccgctagcagagcaatgtctccccctcatacctcgatctcctccagaaacacttcc
tcatctaacgaatcacctcctcctcagtcttccactgtccttgatattccagagagtgta
aaagactacattcagaaagtcaaagcccacatgagtctaacatgcccagctatagaggag
ggtgttagtctgacctctcattacgtggatgtgcaagtgagccagagagagacctttcgc
ttgggaaagaacgcgaacagagtcctggacaaggagctcatcatcacgggagatacggat
cgacaaaacagcttgttggggcatagtcagatcttcggagactcaaatggacataacctc
aaacgatacatagtgctgcttngcaatgcgggcatggggaaaaaccaccctgatcaggag
ctgtgccttgactggtccacagactgcatcccacagtttgactttgtcttcttattagat
ggcaaaactctcgctttgaaaacccccatctacagccttcagacccttttattaaacctc
tcctcctttgccacttcttgcacgaaacccgaggaagtgtacgcgcaaatccttgcggcc
tccaagcgcgtgctcatcattttcgacggctttgacgagctgcgagactacgaagttcta
ctccagactcaagagaaagacgtgataacatctctgcagaaagacagtaaagcggaggcc
tacactgtaagacagctattctctgccatccttcagagggtccttcttccaggatgcact
cttctgctcagtacacgaccgaggggctcggccaaccagctcctccgtcgggcagacagc
tttctggaggtatgtggctttactcccaccgatgtagaagcatacttgtcccagtacttc
actgacccggccctcagagccactgctttggactacttaaaaaactgcagctatctacat
ctcctctgctggaatcccggactatgtcggttggtgtgcctggtgttggaacagtccaaa
actttggacctcctaccgagaactttaaccgggctctgccatcaagtgcttcgtttgaaa
atggaaaagcactgtaaggccacaaactcacagcctgacgttaaaacacaaacacccctg
caatctgaagaagaaacacaaacacaaatctcaggtaataatcaattgaacgtgtgtcac
aaaaacactccagtccgtaagtccagagcacgagtttacacttgtactcgctcgagcaac
caaagagcgaggcgggcaaaaaagcaggtgacagaggggagtgaagtggacgaggaggag
atggagagtgtgggaagggaggtggatagaacagaggagagagagctgctgtcccagctg
agctctttggcgtgggagggggtcaaagccaactcgtccatccttcccaaggggcggacc
ttatctgcccgacacaaggcttttggcctcgggacaggactcctcctctgtcatcccctg
aggaagcagctgggtttctcaagtgatgaggggggaggaggaggagaggacccaaaagac
atgggaggaggagagaaaccagacggaaacagagacggagggaaaacagaaattgaaaac
gttgatgacggccacatcctgttgtgggccagtcccttccttcagagctacttggcagga
gtccacctttctttttccaggactgtatcagagcgcactttcctccagaaccttcctttc
cactcaggtccgaagggacgtcgccgccctcaaagagaggaattccagctgactcagcga
tttgccgtcggcctcctcttccacaacagcgcagagctgcagagcctccactcacacaca
aaggcagccttcagggatatggtggtcaacagacaggctctagtgacaaagcacctcaaa
agtctttctcacggtgacctgagtcccgcccaggtcctggaggcgtgtcactatgtatat
gaagcaagtttcacatcatttggtgatgggagcagaggcaacgcacggttggtcgctcac
ctggcagcgagtcttccagaggtcttgtcatttcacggagttcgactcaaccctccggac
gtgttcactgtgcagaacatacttgaaggaggtggaggtttcagcttggatctgggggat
tctgggattggggtttctggactgagagcgctggtggggctcaacaacgtcaactcgtac
agggcgtgcattgctgatgttatcgccctatgggagcagctggagcggagtggggaggag
gggctcctgcgaggggcggtgtccaagttcaagatccaccctctgaaaatcacacagctg
cgtcatgtggaccacctggcacagctggtgaacatacatgtgcacaggaggctgtcgagc
agttgcaccgattcagactccatcttggcagacggagtaccagctgtccgagagctacac
aagctggagtttgagcttggcccagacagaggtcccctgggtctctccaagctgtgggag
ctcctgccagctctacgtaacctacagcacttagatctggagaacagtaagatcggggac
gagggatccgagaggttggctgatgctttagagtcactctgttccctggagattctgaat
gtgtctcagaattgcatcggagaccacgggctgaagaaactggcaaccaccctcgggtat
ctgcccaaactgcactgtttgagtctctacagtaacgtgatttctgacgaaggggcagag
ggtttagcagctatcctcccacacatggcgtctctcactgaccttgatgtgaagtacaac
aagctgacagacgtcggagcgcaatgcctcggagccagtctgagaaactgtcaaaaaata
aagactttaaggatgtggaaccagtgtattccatacggagtgtttgagcgtcttcagcag
caagacggtcgcatcctctggcattaa
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