Hippoglossus hippoglossus (Atlantic halibut): 117766011
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Entry
117766011 CDS
T07778
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03013
Nucleocytoplasmic transport
hhip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117766011 (casc3)
03015 mRNA surveillance pathway
117766011 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117766011 (casc3)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117766011 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
117766011
NCBI-ProteinID:
XP_034448591
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All DBs
Position
8:23004889..23011454
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AA seq
806 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSASPTTKTRAREPEPAEAPAVRPEPKNNAES
ECESEDGVGEAVLSDYESADPEDNGSHSEGVEEEEEAEQLSDEEAPAAAAAAASESEPPV
PSDPAPGEEGERVEVNEEEEEQEEEEQQVEEQDEEQQEEEEEQEEEPEREEGGESKEESK
AEEKENLTGERQSGDGQESTDDPETKVGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRG
HAQEEERPKGRNRKLWKDEGRWEHDKFREEEQAPKSREELIAIYGYDIRNGGGPGDRSYR
QRRPRQSVSPGRDKRWREGGGERAVRSWQGGGGGQNRGVPPPSSIHTSSTSSSSLPLSSA
QRSNNPSRPPPSRSRPSHQNQMHLPPQSHYRNDESNTPQMHPRERQGPKAHSEPAGDRGV
VSRGGRGSGGRGGPSLVFENSGTSQPGVEEKDLSSSAVKTVALSQPGGYQSASPRRQQKE
QRGGADRSVSGLAASSDTSLQSSSVANREASPPTERPVERKSYSLARRTRSRPTDLGSKQ
PSVEEATVGGNASSPGSAGGRSWTGAGDGPSQTGSGGGGGLTELDADVARLSLAGQSWNQ
SPTSYIRSEMRGLPSPLHIPAGPPQFSSMEEMGVGSSRAKRYSSQRQRAVPEPAPPMHLG
VMDGHYYEPMSYQGPIYAHGDGPTPIPPQGMLVPPEMHIPHPGLHPHQSGAPIANPALYA
GPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPTMYPTPQAQAQVTYGGVTYYDTMQQQAQP
KPSPPRRTSQPVTVKPPPPEVPFASE
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcgggaggtcggcctccccgaccaccaagacccgggcgaga
gagcccgagccggcggaggccccagcggttcgacccgagcccaagaacaacgcggagtct
gaatgtgagagtgaagatggagtgggagaagctgtcctgtctgactacgaaagtgcagat
cctgaggacaacggctcccattcagagggagtggaggaggaagaggaggccgagcagctc
agcgacgaagaagccccagcagcagcagcagcagcagccagcgagtcagagcctccggtg
cccagcgacccggcaccgggagaggagggggagcgggtagaagtcaatgaggaggaggag
gagcaggaggaggaggagcagcaggtggaggagcaggacgaggagcagcaggaggaggag
gaggagcaggaggaggagccagagagggaggaagggggtgagagtaaagaggagagcaaa
gccgaggagaaggaaaatctcaccggagagagacagagcggcgacggacaggagtccaca
gacgacccagaaacgaaggtgggagggaaaccgggtcaaaagcttgacgatgacgaggac
agaaaaaacccggcatacatccctaggaagggtctgttcttcgagcacgacgtcaggggt
cacgctcaggaggaggagagacctaaaggtcggaacaggaagctgtggaaagacgagggt
cgctgggagcacgacaagttcagggaggaagagcaggcgcccaagagccgcgaggagctc
atcgccatctatggttatgacatcagaaacggcggcggcccaggagaccggtcgtacaga
cagcgcaggccaagacagagtgtgtctcccggcagagacaaacggtggagggagggagga
ggagagcgagcagtccgatcctggcaaggaggaggtggaggtcaaaaccgaggagttcct
ccaccttcatccatccacacctcctctacatcatcttcctccctccctctctcctccgct
cagcgcagcaacaacccctccagacctccaccctcccgcagcagaccatcccaccagaat
cagatgcacctcccacctcaatcccactacaggaatgatgaatcaaacacaccccagatg
catcccagagagcgacagggccctaaagctcattcggagcctgcaggcgacaggggtgtg
gtcagcagaggagggcgtggtagtggaggaagggggggtccctccctggtctttgagaac
agtggcaccagccaaccaggtgttgaggaaaaggacctgagctccagcgctgtaaagaca
gtggcgttgtcacagccgggcggttatcagtctgcttcacccagacgacagcagaaggaa
caacgaggtggtgccgaccgctctgtgtctggattggcagcttcctctgacacctccctt
caatcgtcatcagtggccaatcgggaagcctctcctcccacagagcggccggtggagcgt
aaatcttactcgctggctcgcaggactcgctctcgacccacagacctgggaagcaaacag
ccgtccgtggaggaggcgacagtgggcgggaacgcctcgtcccctggcagcgcgggaggg
aggagctggacgggagcaggagacggaccgagtcagacgggaagtggcgggggagggggg
ctgaccgagctggacgcagacgtggctcgactcagtctggccggacagagctggaaccag
agtccgacgtcgtacatccgctctgagatgagaggcctccccagccccctgcacatcccc
gccggcccgccgcagttctccagcatggaggagatgggcgtcggctctagtcgggccaaa
cgctactcctcccaacgtcagagagccgtacctgagccggctccgcccatgcacctggga
gtgatggatggccactactacgaacccatgtcgtaccagggaccaatctatgctcatggg
gatggccccacccccatcccaccacaaggcatgctggtcccgcctgagatgcacatcccc
caccctggtctccacccacaccaatcaggggccccgatcgctaaccccgccctctacgca
ggcccacctgtgtctctgtcacccgggcaaccacagcaactgctgccacctcctttctac
cctccaccgggcgtcatgaccttcccttaccccaccatgtacccaaccccacaggctcag
gcccaggtgacctatggaggtgtgacgtactacgacacgatgcagcagcaggctcagccc
aagccttcgcccccccgccgcacgtcccagcccgtcactgtcaagccccccccaccagag
gtgccctttgcctcagagtga
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