Hippoglossus hippoglossus (Atlantic halibut): 117766239
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Entry
117766239 CDS
T07778
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117766239 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117766239 (ddx5)
03009 Ribosome biogenesis [BR:
hhip03009
]
117766239 (ddx5)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117766239 (ddx5)
Spliceosome [BR:
hhip03041
]
Complex A
U1 snRNP components
U1 related factors
117766239 (ddx5)
Complex B
117766239 (ddx5)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
Pre-60S particles
Helicases
117766239 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117766239
NCBI-ProteinID:
XP_034448990
LinkDB
All DBs
Position
8:complement(20584525..20589849)
Genome browser
AA seq
624 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGGGPPRFGGNRGGGGGGGGGKFGNPGERLRKKHWNMDELPK
FEKNFYQQHPDVDRRPPQEVELYRRTKIITVKGRDCPNPIAKFHEASFPTYVMDVITKMN
WTDPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRR
CDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV
INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLIAVLREANQAINPKLLQ
MAEDRGGRSRGGRGGDFRDRDRYSSGRRDFGSFRDRDNGRGFDNGPNKFGTNTQNGGYGN
STGNGSGNGYGGGSFTGNGQSNFTGNQTGAFGAQTTFQAPQFAPVKAGAPNGASHPPFPF
PPAQAPQQHPPPLVPYAMPPQFTQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatactccgacagagaccgcggccgcgacagagacagaggctatggcggaggc
ggaggacctcctcgctttggcggcaaccgcggcggtggaggcggcggcgggggaggaaag
ttcgggaaccccggtgaacggctccgtaagaaacactggaacatggacgagctccccaag
ttcgagaagaacttctaccagcagcacccggacgtcgaccgcaggccaccgcaagaagtg
gagctgtacagaaggaccaaaatcatcacagtgaaggggagagactgcccgaaccccatc
gccaagttccacgaggccagctttccaacttatgtgatggatgtgatcaccaaaatgaac
tggaccgacccgacacccatccaggctcagggatggcctctggcgcttagtggcaaggac
atggtcggcattgctcagactggctctggcaaaactctttcgtatctgttgcccgccatc
gtgcacatcaaccaccagccgttcctggaacgtggcgatgggcccatttgtttggtgctg
gcccccacccgtgagctggctcagcaggtgcaacaggtggctgcagaatacggtagagct
tctcgcctgaagaccacctgtatctacggcggtgcacctaaaggaccacagattcgtgac
ctggaaagaggtgtcgagatttgcatcgccactcccggcagactcattgacttcctggag
gctggaaagacaaatctccgtcgttgcacatatctggtgctggatgaggccgacagaatg
ctggacatgggcttcgaaccacagatccgaaaaatcgttgaccaaatcaggcctgaccgt
cagaccctgatgtggagtgctacttggcccaaagaggttcgtcagcttgcagaagacttc
ctgaaggaatatgtccagatcaatgtcggggctctgcagctcagtgccaaccacaacatc
ctgcagatagtcgacgtctgcaatgacggggagaaggagaacaaactgatccgtctgctt
gaggagatcatgagtgagaaggagaacaaaaccatcatctttgttgagacaaagaggcga
tgtgatgacctcaccaggaggatgagacgtgatgggtggccagctatgggaatccatgga
gataaaagccaacaggaaagagactgggttctcaatgagttcaaatatggaaaggctcca
attcttattgctacagatgttgcttccaggggtctagatgttgaagacgtgaaatttgtc
atcaactttgactaccccaacaactcagaggactatatccaccgcattggcagaacagct
cgtagtcaaaagactggaaccgcttataccttcttcactcccaacaacatgaggcaggcc
agcgacctcatcgctgtgctccgcgaggccaaccaggcgatcaaccccaagctcctccaa
atggcagaagacagaggaggtcgttcaaggggaggccgaggtggtgatttccgggacagg
gataggtattcctctggaaggcgtgattttggcagttttagggatagggataatggtaga
gggtttgacaacggaccaaataaatttggcacaaacacacaaaatggaggctatgggaac
agtactggcaacggcagtggcaatggctacggtggaggcagcttcactggtaacggacag
tccaactttactggcaaccaaactggggcctttggagcccagaccaccttccaggctccg
cagtttgcccccgttaaggccggcgctccgaacggcgcaagtcaccccccgttccccttc
cccccggcacaggcgccacagcagcatcctcctccactggtgccgtacgccatgcctcct
cagttcactcagtaa
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