Hippoglossus hippoglossus (Atlantic halibut): 117766332
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Entry
117766332 CDS
T07778
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117766332 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117766332 (smarca4a)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117766332 (smarca4a)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117766332 (smarca4a)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117766332 (smarca4a)
Chromatin remodeling factors
BAF complex
117766332 (smarca4a)
PBAF complex
117766332 (smarca4a)
GBAF(ncBAF) complex
117766332 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117766332
NCBI-ProteinID:
XP_034449149
LinkDB
All DBs
Position
8:complement(20966755..20979518)
Genome browser
AA seq
1658 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQENMHQMHKPMEAMHEKGMPDDPRYGQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPGPANGPPSGPMMPVGPPGPVAGPMEGSGDPNQGMGQPNRGGPQGPVG
PGGAVGGPVGAPGPGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPG
MQQQPMPNMPPSTGPGGGPGPGPGPGPAQANYNRPHGMVGPNMVPPGPAGVPPGMQGPPT
NGPPKSWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPA
QPPPMMLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRT
KATIELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEK
QQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAVATYHANTEREQKKE
NERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALK
EKKKKKKKKKKPEATEGRSSALGPDGEPLDETSQMSDLPVKLIHIDSGKILTGIEAPKAG
QLETWLEMNPGYEVAPRSDSEDSGSEDEYEDEEEEEVLPPPPPPPPPQPQPSTAPVEEKK
KIPDPDTEEVSEVDVLHIIEHAKQDVDDEYGTASFNRGLQSYYAVAHAVTERVDKQSSLL
INGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPFLII
VPLSTLSNWVYEFDKWAPSVHKISYKGSPAARRAFVPILRSGKFNVLLTTYEYIIKDKQV
LAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLL
PTIFKSCTTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP
EKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHP
YMFQHIEESFSEHLGYSGGVVSGPDLYRSSGKFELLDRILPKLRVTDHKVLLFCQMTTLM
TIMEDYFAYRSFKYLRLDGTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSAD
TVVIFDSDWNPHQDLQAQDRAHRIGQINEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI
QAGMFDQKSSGCERRAFLQAILEHEEQDEVGVRGGCRTRGAWEEDEVPDDETVNQMIARS
EEEFELFMRMDLDRRREDARNPKRKPRLMEEDDMPSWILKDDAEVERLTCEEEEEKMFGR
GSRQRKEVDYSDSLTEKQWLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGPATPSSSS
GRGRDKDEEVKKAKKRGRPPAEKLSPNPLSLTKKMKKTVDAVIKYKDGNGRQLSEVFIQL
PSRKELPEYYELIRKPVDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYE
DSIVLQSVFTSVRQKIEKDDESEGEESEEEEEELDEGSESEPRSVKVKIKLSRKEKGDRS
GKGQRRRGRGSRAKPVVSDDDSEEEQEEEHSASGSDDD
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcggcctggaccctccccaggccca
gggccatctccaggaggcatgatgggcccgagtccgggtccctcaccagggtcagcccat
agcatgatggggcccagtccagggccccctggatctgggcacccccaccctccacaggga
ccctcaggatatcctcaggaaaacatgcaccagatgcacaaacccatggaagccatgcat
gagaagggaatgcccgatgaccctcgctacggacagatgaagggcatgggcatgagacca
ggggggcacagtggtatgggaccccctccgagccccatggaccaacactctcaaggttac
ccgtcaccattgggtggttcagagcatgcacccagccctggcccagccaatggccccccc
tcgggccccatgatgcccgtgggtccccctggccccgtcgctggccctatggaaggcagc
ggtgaccctaatcagggcatgggtcaacctaaccgtggcggtccccagggtccagttgga
ccaggtggagcagtaggtggacctgtcggtgcacccgggccaggtgggcccactcctttc
aaccagaaccagttgcaccaactcagggcccagataatggcttacaagatgctggcacgc
agtcagcccctaccagatcacctgcagatggctgtgcaggggaagaggcccatgccaggg
atgcagcaacagcccatgcctaacatgccaccttctacgggacccggaggtgggcctggg
cctgggcctggaccgggaccagctcaagccaactacaacagaccacacggcatggttggc
cctaatatggtcccccccggacctgcaggggttcccccaggtatgcaaggcccgccgacc
aatggacctcctaaatcatggcctgaaggacctatggtgaatgctgctgctccatccaat
cctccccagaagttgattccccctcagcccactggcagaccctcgcccgctcctccctct
gtgccccccgctgcctccccagtaatgccccctcagacacagtccccgggtcagcctgcc
cagccccctcccatgatgctgcatcagaagcagaaccgcattacccccattcaaaaaccc
cgcgggctggacccagtggagatcctccaggaaagagaatacaggctacaggcccgtatc
gctcaccgtatccaggagctggagaacctgcccggctctttagcgggtgacctgcgcacc
aaggccaccatcgagctgaaggccctgaggctgcttaacttccagagacagctgcgtcag
gaggtggtggtttgcatgcggcgtgacaccgcgttggaaaccgcccttaacgctaaggcc
tacaagcgcagcaaacgtcagtctctgcgcgaggcccgcatcaccgagaagctcgagaaa
caacagaagatcgaacaggagcgcaagcgtcgtcagaaacaccaggaatacctcaacagc
atcctgcagcacgccaaggactttaaggagtaccaccgctccatcacagcgaagatccag
aaggccaccaaagctgtcgccacctatcatgccaacaccgagcgagagcagaagaaagag
aacgagcgcattgagaaggagcgaatgcggaggctgatggctgaagatgaagaaggatat
cgtaaacttatcgaccagaagaaagacaagcgtctggcctacctgcttcagcagacagac
gaatacgtggccaacctcactgagctggtgcgagcccacaaagccgtgcaagctctcaaa
gagaagaagaagaagaagaagaaaaagaagaagcccgaggccacagagggtcgttcttct
gctctgggacctgatggagagcctttagatgagaccagtcaaatgagtgacctgcctgtg
aagctcatccatattgacagtgggaagatcctgactgggattgaagcacctaaggctggt
cagctggagacctggcttgaaatgaacccaggatatgaagttgcgccacgttcagacagt
gaagacagtggttcagaagacgagtatgaggatgaggaggaagaggaagtgctgcctccg
cctccgcctccccctccgcctcagcctcagccctctacagctccggtagaggagaagaag
aagattcctgaccctgatactgaagaagtatctgaagtggatgtcctgcacatcatcgaa
cacgccaagcaggatgtagatgatgaatacggtactgcgagtttcaaccgaggcctgcag
tcctactacgctgtggctcatgctgtcacagagagggtggacaaacagtcgtcgctgctg
atcaacgggcagctcaagcaataccagatcaagggtctggagtggctggtgtcactttac
aacaacaacttgaacggcatcctggccgacgagatgggtcttggaaagacgattcagacc
atcgccctcatcacttacctcatggagaacaagcgcctcaacgggcccttcctcatcatc
gtacctctctcaactctatcgaactgggtctatgagtttgataagtgggcgccatcggtc
cacaagatctcctacaaggggtctcccgctgctcggcgcgcgttcgttcccatcttgcgc
agtggcaagtttaacgtgctgctcaccacatacgagtacattatcaaagacaaacaagtg
ctagcaaagctccgttggaagtacatgattgtggacgagggccatcgtatgaagaaccac
cactgtaagctcacccaggtcttgaacacgcactacctggcgccacggcgtgtgctgctc
acgggcaccccgctgcagaacaagctacctgagctctgggccctgctcaacttcctcctg
ccaaccatcttcaagagctgcactacttttgagcagtggttcaacgcccccttcgccatg
actggagagaaggttgacctgaatgaagaagagaccattctgatcattcgtcgtttacac
aaggttctccgaccgttcttactgcgccgactcaagaaagaagtcgaggcccagctgcca
gagaaggtggagtatgtgatcaagtgcgacatgtccgccctgcagagggttctgtacaga
cacatgcaggccaagggagtcctgctcacagacggctcagaaaaagacaagaagggtaaa
ggaggcacaaagaccttgatgaacactatcatgcagctgaggaagatttgcaaccaccct
tacatgttccagcacattgaggagtctttctctgagcatctcggttactccggtggagta
gtctctgggcctgacctgtaccgctcctctgggaagtttgagctgctggaccgtatcctg
cccaagctcagggtcaccgaccacaaagtgctgctcttctgtcaaatgaccacactcatg
accatcatggaggactactttgcgtaccgcagcttcaagtacctgcgtttggacggaacc
accaaggcggaggaccgcggcatgctgctcaagacgttcaatgacccagcctctgagtac
tttgtgttcctgctcagtaccagagctggaggcctgggcctcaacctgcagtctgctgac
acagtcgtcatctttgacagtgactggaacccacatcaggacttgcaggcgcaggacaga
gcccatcgtatcgggcagataaacgaagtgcgcgtcctccgcctctgcaccgtcaacagt
gtggaggagaagattctggctgcggcaaagtataaactgaacgtggaccaaaaggtcatc
caggctggcatgttcgaccagaagtcctcaggctgtgagcgacgggctttcttacaggcc
atcctggagcacgaggaacaggacgaagtcggggttcgaggtggctgccgcactaggggg
gcgtgggaggaggatgaggttcctgatgatgagactgtcaaccagatgattgccagaagt
gaagaggagtttgagctgttcatgcgcatggatctagaccgacgccgggaggatgctcgc
aatcccaagaggaaacctcgcctgatggaggaagatgatatgcccagctggattttgaaa
gacgacgctgaggttgagaggctcacttgtgaagaagaggaggagaagatgttcggcaga
ggttcccgccaacggaaggaggtggactacagtgactcgctcactgagaagcagtggctc
aaggccatagaagaaggtaatctagaggacattgaagaggaagtgcgtcacaaaaagaca
acaagaaagcgcaagagagaccgcgaccacgacggcccggccacacccagctccagcagc
ggtcgagggcgggacaaggacgaggaggtgaagaaagcaaagaaacgtggtcgcccgcct
gctgagaaactctctcccaaccccctctccctcactaaaaagatgaagaagacagttgac
gctgtgatcaaatacaaggatggtaatgggcgacagctgagtgaggtcttcatccagctg
ccctctcgcaaggagctgcctgagtactacgagctcatccgcaaacctgtggacttcaga
aagatcaaggagaggatcaggagccacaagtatcgcagcctgaacgacctggagaaggac
gtgatgctgctgtgtcaaaatgcccagaccttcaacctggaggggtctttgatctacgag
gattccattgtgcttcagtctgtcttcaccagtgtgaggcagaagatcgagaaggacgac
gagagcgaaggagaggagagtgaggaagaggaggaggagctggatgaaggctcggagtct
gaaccccgctcggtgaaagtgaagatcaagctgagccggaaagaaaagggcgatcgttca
ggaaaaggacaacgacgaaggggccgcggctctcgggctaagccggtggtgagcgacgac
gacagtgaggaggagcaggaagaggagcattcggccagtggcagcgatgacgactga
DBGET
integrated database retrieval system
