Hippoglossus hippoglossus (Atlantic halibut): 117766594
Help
Entry
117766594 CDS
T07778
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117766594 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117766594 (xab2)
03041 Spliceosome [BR:
hhip03041
]
117766594 (xab2)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117766594 (xab2)
Spliceosome [BR:
hhip03041
]
Complex B
Other components
Prp19-related factors
117766594 (xab2)
Complex C
117766594 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_8
TPR_2
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_MalT
TPR_1
Motif
Other DBs
NCBI-GeneID:
117766594
NCBI-ProteinID:
XP_034449682
LinkDB
All DBs
Position
8:14924390..14931133
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNEKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNATKSTLNMIYERALKELP
GSYKLWYSYLRERRKQVKGKCILESSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLSLPETAIRVYRRYLKLSPQNAEDYID
YLRSVGRLDEAAVRLAAVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAENGQDEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDDIPRQIINTYTEAVQTVDPIKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGSFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVDTDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDIHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTATFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTSTTGPVSDLAPGQMGLDDMKMLEQKAHLLAAEAEQ
DKPKPKEKILFVRSDTSRTELAELAKQANPDEIDIDDDEDDDEGQGPEEVQLEQKSVPTA
VFGGLKDE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgttgaacgaaaaacccgatgttatgtttgaggacgatgatcttccctatgaa
gaggagatcatccggaacccgtactcggtcaagtgctggatgcgttacatcgaattcaaa
cagaacgcaaccaaatccaccctgaacatgatctatgagcgggctctgaaggagctgcct
ggcagttataaactgtggtacagttacctgagagagagacggaaacaagtcaaagggaaa
tgcatcttggaatcatcttatgaagagatcaataattgccatgaaagggctctggtgttc
atgcataagatgcccagaatatggctcgattactgccagttccttgtgtctcagagcaag
atcacaagaagtcggcgaacatttgaccgtgcactccgagcacttcctgtcactcagcac
ccgcgcatctggcctctgtatctccgcttcgcccgtaacctgtccctgcctgagaccgct
atccgtgtgtatcgtaggtatcttaagctttctccacaaaatgcagaggactacatcgac
tacttacgatctgttggccgcttggatgaagctgctgtgcgactggcagctgttgtgaat
gacgaaagatttgtgtccaaagagggaaaatctaactatcaactgtggcatgagctgtgc
gacctaatctcccagaaccccgataaggtgacttccctgaatgtaggagccatcatccga
ggaggcctcacccgcttcactgaccaacttggaaagctttggtgctctttagctgactat
tacatcaggagcggccacttcgagaaagcccgcgatgtatacgaggaagccatccttaca
gtggtgacggtgagggatttcacacaagtgtttgatagctatgcccagtttgaggagagc
atgattgctgccaagatggagaccactgctgagaatgggcaggatgaagaagatgacatc
gacctggagcttagactggcccgctttgagcagctcatagcccggcggcccctccttttg
aacagtgttctgctgaggcaaaacccccataatgtgcacgagtggcacaagcgggtaaaa
ttgtatgatgacattccacgacagattatcaacacctacactgaggcagtacagacagtg
gatccaataaaggccacagggaagcctcattctctctgggtctccttcgctaaattctat
gaggagaatgagcagctggatgatgccagaacgatctttgagaaggctaccaaggtgaac
tacaagcaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagcttcgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatctaag
aaagcagagtactttgatgcatctgagccagtccagaacagggtgtacaagtccttgaag
gtctggtctatgctggcagacttggaggagagtcttggctcgttccagtctacgaaggca
gtgtatgaccgtattattgacctccgcatcgcgacgccacagatcatcatcaactatgcc
atgttccttgaagagcacaactactttgaggagagcttcaaagcatatgagcgcggtatc
gctctcttcaggtggcccaacgtttatgacatctggaacacttacctcaccaagttcatt
gatcgatacgggggcaagaagctggagagagcaagagatttatttgaacaagcccttgat
ggctgccccgccaagtttgccaagaccatatacctgttgtatgccaaattggaggaagag
tatggattggcccggcatgccatggctgtatatgaaagagcgacacaggcagtagacact
gatgagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggtgtc
acttataccagagcaatttaccagaaagccattgaggtccttcccgatatacatgcaaga
gacatgtgtctgcggttttctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctaccttctggcag
gcctggaaagaatttgagatccgccatggaaacgaggacaccattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaacttcatgtcctcgcagatg
atgaaggccacaacaagcaccacaggcccagtgtcagaccttgctccaggccagatggga
cttgatgacatgaagatgttggagcagaaagcccacctgcttgctgcagaagccgagcag
gacaaacctaagcccaaagagaagattctcttcgtcaggagtgacacttctcgcactgag
ttggctgagcttgccaaacaggctaatcctgatgagatcgacattgatgatgacgaggat
gacgacgaaggccaaggaccagaagaggtgcagcttgaacagaagagcgtccccacagct
gtctttggaggacttaaagacgaatga
DBGET
integrated database retrieval system
