Hippoglossus hippoglossus (Atlantic halibut): 117767233
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Entry
117767233 CDS
T07778
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04137
Mitophagy - animal
hhip04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117767233 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117767233 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117767233 (vcp)
03009 Ribosome biogenesis [BR:
hhip03009
]
117767233 (vcp)
04131 Membrane trafficking [BR:
hhip04131
]
117767233 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhip04147
]
117767233 (vcp)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117767233 (vcp)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117767233 (vcp)
Membrane trafficking [BR:
hhip04131
]
SNARE
SNARE associated proteins
Others
117767233 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117767233 (vcp)
Exosome [BR:
hhip04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117767233 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
ABC_tran
DUF815
AAA_24
NB-ARC
TsaE
ResIII
Sigma54_activat
NACHT
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
117767233
NCBI-ProteinID:
XP_034450567
LinkDB
All DBs
Position
9:complement(17858966..17867956)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLATAILKQKSRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMSILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRECIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSTAGG
TGPAHGTGGTGSGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggaggggaatccaaaaatgatgatctagccactgcgattctgaaacagaag
agcagacccaacagactgattgttgatgaatccatcaatgaagacaacagtgtggtctct
ctctctcagaccaagatggatgagctgcagctcttccggggagacacagtgctgatgaag
ggaaagaagaggagggagactgtgtgcatcgtgctctctgatgacacctgttctgatgaa
aaggttcggatgaaccgagtggtccgcaacaatctgagggtccgtctgggtgatgtcatt
agcattcagccatgtcccgatgtgaagtacggaaagaggatccatgtcctcccaatcgat
gacacagtagaaggaattactggcaacctgtttgaggtttacctgaagccatacttcttg
gaggcttacaggccaatccgcaaaggtgatattttcctggtcagaggtggcatgcgtgct
gtggagttcaaggtggtggagaccgatccctccccatactgcattgttgctcctgataca
gtcatccattgtgagggagaaccaatcaggagagaggatgaggaagagtccctgaatgag
gtgggctatgatgacattggaggcgtgaggaagcagttagctcagatcaaagagatggtg
gagctgcctcttagacaccctgcactgttcaaggccattggagtcaagcccccacgtgga
atcctgctgtacggaccccctggaactggaaagaccttgattgccagagctgtggccaat
gaaactggagctttcttcttcttgattaatggtcctgagatcatgagcaagctggcagga
gagagcgagagtaacctgagaaaggccttcgaggaagcggagaagaatgcccctgccatc
atctttatcgatgagcttgatgcaattgctcccaagagagagaagactcatggagaggtg
gagaggcgcattgtctctcagctgctgactcttatggacggcctgaaacagagagctcat
gtcattgtcatggctgccaccaacagacccaacagcatcgacccagctctgaggagattt
ggtcgtttcgatagggaagtggacattggcatccctgacgccactggcagattggagatt
cttcagatccacaccaagaacatgaagctgtctgatgacgttgacttggaacaggtcgcc
aatgagactcatggacatgttggtgcagatctggctgccctctgctctgaggctgccctg
caggccatcaggaagaagatggacctgattgaccttgaggatgagaccattgacgctgag
gtcatgaactcgcttgccgtcaccatggatgacttcaagtgggccctgagccagagcaac
ccatcagccctgagggagacagttgttgaggtgcccaacatcacctgggaggatatcggc
ggtctggaggatgtcaagagggagctgcaggagttggtgcagtacccagtggagcacccg
gacaagttcctcaagtttggcatgaccccatccaagggtgtgctgttctatggtccccct
ggttgtggtaagactcttctggccaaagccatcgcaaatgagtgccaggcaaatttcatc
tccatcaaagggcctgaactgctcaccatgtggtttggagagtctgaggccaacgtcaga
gagatctttgacaaggctcgtcaagcagccccatgcgttctgttctttgatgagctggac
tccatagccaaggctcgtggtggcaacgtgggagacggtggtggagcagccgaccgcgtc
atcaaccagatcctgaccgagatggatggaatgtccagcaagaagaacgtcttcatcatt
ggagccacaaacagaccagacatcattgaccccgccatcctgagacctggccgtctggat
cagctcatctacatcccactgcctgacgagaagagcaggatgagcatcctgaaggccaac
ctccgcaagagtcccatcagcaaggatgtggatttggacttccttgccaagatgaccaac
ggtttctctggagctgatcttacagagatctgccagagggcgtgtaagctcgccattaga
gagtgcatcgagaatgagatccgccgagagagggagaggcagaccaacccatcagctatg
gaggtggaagaggacgaccctgtgccagagatcaggaaggaccactttgaggaggctatg
cgatttgcccgtcgctccgtcagtgacaatgacatccgcaaatatgagatgtttgctcag
acactgcagcagagccgtggctttggcagcttcagatttccctccagtactgcaggcggc
accggtccagcccatggcaccggaggaactggcagtggtccagtgttcaatgaagacaac
gacgatgacctttacggataa
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