Hippoglossus hippoglossus (Atlantic halibut): 117767304
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Entry
117767304 CDS
T07778
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117767304 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117767304 (lsm1)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117767304 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
117767304 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117767304
NCBI-ProteinID:
XP_034450686
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All DBs
Position
9:19330782..19334671
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AA seq
133 aa
AA seq
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MNYVPGTASLIDDIDKKHLVLLRDGRTLIGFLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDMDKPCDTVLQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSVPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccggggacggccagcctcatagacgacatcgacaagaagcacctggtg
ctgctcagagatggaagaacactgatcgggttcctcagaagcattgatcagtttgccaat
ttagttttccaccagacagttgagcgcatccacgtgggaaagaaatttggtgacatcccc
agaggaatattcatagttagaggagagaatgtggtcctgctgggagagatagacatggat
aaaccctgcgacacagtcctgcagcaggtttccatcgaggagattttggaggagcagcgg
ttgcagcaacaagccaaacaggagacggagaaagtcaaaatgcaggtcctgaaggaccga
ggcctgtccgtacccaaagctgacaacttggacgaatactaa
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