Hippoglossus hippoglossus (Atlantic halibut): 117767412
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Entry
117767412 CDS
T07778
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117767412 (gapvd1)
Membrane trafficking [BR:
hhip04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117767412 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
117767412
NCBI-ProteinID:
XP_034450905
LinkDB
All DBs
Position
9:19711323..19740294
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AA seq
1488 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVGSEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSVEASPAECCQHAKMLEDTQFVDGYKTLGFQETIYGEFLARLRENPRLVASCLVAGERL
NQEHTPGVIYTVFTSLYGNCIMQEDESYLLQVLRYLVEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPGKVTERLTPAQQERFGEKGSD
DYKQRVQAAVEANEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDADPR
RKSSLSKFDKSCVAAFLDVVIGGRAAETPPMSSMNLLEGLSRTVVYITHDQLLAMVDFVR
SVTAGDQLREEEHMALENLLANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPTSTTLSAHIPLVAPFAARSRSRTNIAQEGEAEASSQESLQETEPEEVLV
ISLGTGPQTVPGMMSENEVLNLQMADGAQGDSHADDTKLHGKPDKTLRFSLCSDNLEGIS
EGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEIR
DMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSLLYPPGSSS
VLLDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSDDTEVREVS
SRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESGHGAHHLTSP
PSQTDSLLAMFDPLSSAEGSSTGTIVRPKVHYARPAHPPPDPPIPEASALGPETRHSLFM
PHCLAQAELEHTKQRHSFPDKLVRSRSSDIVCPGRRPTSDPGLNRRVAVEERDPAGAFAL
GPSSSPSKDSLKGEVEDRKDSDDEKSDRNRPWWKKRFVSAIPKVLYWTAESDVPAPIAAF
RKRDKQEKDDVVQERISQVLSDDLLPRQSSQAQAAEDILDKYRNIKRPSPSDGAATGASY
DGTGDLCVEDNVHDSPREDTLQNMSTDDLPDSASQSANQHDSKFSFSDAKKKLRLALCSA
DSVALPIMAPATTRNGLPDHMDTEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVGR
FDARTCRKLLAAIAEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVANRYFT
TVCVRLLLEHMESKMLDFTKAFQGCTASDDKTAAVEDFLRYLYGAMARDAIWQYASEDQL
QDAQMAIERSVMNRIFKLAFYPNQDGDILRDQLLHEHIQRVSKVVTATHKALQIPEVYLR
EAPWPSAQSEIRTINAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVL
IRANPPCLLSTVQYINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcggctgtatgtg
gggtcggaaaagcagctaatccagaggctcaacagtgatgtgctgaagacagctgagagg
ctgtacagggccgcatggatcgccaagcagcagaggatcaacctcgatcgtctcattctc
accagtgtggaggcctctcctgccgaatgctgccaacatgccaaaatgctggaggacaca
cagtttgttgatggctacaagaccctgggcttccaggagacgatctatggcgagtttttg
gcccggttgagggagaaccccagactggtagcttcctgcctggtggcaggagagaggctg
aaccaggagcacacccccggggtcatctatacagtcttcacctcactttatggcaactgt
atcatgcaggaggacgagagctatttgctacaggtgttgcggtacctggtagagtttgag
ctgaaggagagtgacaaccctcgccgtctgctgcgacggggaacctgtgccttcagcatc
cttttcaagctcttctcagagggcctgtactcagccaagctcttcctcactgccaccctc
cacgaacccattatgcagctactggtggaagatgaagaccacctggagacggacccaggc
aaggttacagagcgcctcactccggctcagcaggagcgcttcggagagaagggctctgat
gactacaaacaaagggtgcaggcagctgtggaggccaacgaagccaagctggtggctttg
gtcaacaaatttattggttacttgaagcaaaacacctactgcttcccccacagcctgcgc
tggattgtgtcccagatgtacaagacgttgtcatgtgtggagcgtcttgaagtaggtgag
gtgcgcaccatgtgtacagacctgctgctgacctgcttcatctgtccagctatcgtcaac
ccggagcagtatggtataatctctgatgctcccatcaatgaagttgcacgctttaatcta
atgcaggtggggcagcttttgcagcagttggcaatggctgatgatgatgcggatccaagg
cggaaaagcagtttgtctaaatttgataagagttgtgttgctgcctttctggatgtggta
attggaggaagagcagccgagaccccgcccatgtcctcgatgaaccttctagaaggcctc
agcaggactgtggtctatattacacatgatcagctgctagcaatggtggactttgtgcgc
agtgtgactgcaggggaccaactccgggaggaggagcacatggccctggagaacctgctg
gccaacgtgccccagtctcgaaccgtgaagagcaacagtctggagctcactccctccaac
accccccagctctccccggctaccactcctgccaacaagaagaacaggctccccatagga
caacacttagctgccataacatcctgggaccccacaagcaccactctgtctgcccacatt
ccattagtagccccttttgctgctcgtagccgcagccgtaccaacatagcccaggagggg
gaggcagaggccagctcccaagagtcccttcaggagacggagccagaggaggtgctggtg
atttcactaggaactggtcctcagacggtccctgggatgatgtcagagaatgaggttttg
aacctgcagatggctgatggggcccagggagatagtcatgctgatgataccaaactgcat
ggtaaaccagacaaaaccctgcgcttctccctctgcagtgacaacttggaaggcatctca
gagggtccttccaatcgttctaattcagtctcgtctctggacctggagggagagtctgtc
tctgagcttggagctggaccctcaggcagcaacggggtggaggctctgcagcttttggag
catgaacaggccaccactcaggacaacctggatgataaactgcgcaagtttgagatcaga
gacatgatgggactgacagacgatcgggacatctctgagacagtcagcgaaacctggagc
accgacgtgctcggcagcgacttcgaccctaacatggatgaggatcggctgcaggaaata
gcaggggcagctgcagagaacatgcttggcagcctgctgtatcctcctggctcaagttca
gtgctgctggacccctacggctccaccatctcagagaccacaagtgaggcctggagcgtg
gaggtcctgcccagcgactcagaggccccagacctgaaacaggaggagcgtctgcaggag
ctggagagctgctcaggggtcggcagcacctccgacgacacagaggtcagagaggtcagc
tcgagacccagcaccccaggcctcagcgttgtctcaggtatcagtgcaacctcagaagac
atccccaacaagatcgaggacttgcggtcagagtgcagctcagactttggagggaaggac
tctgtgaccagtccagatggggaggagtcaggccacggagcacaccatctgacatctcca
ccctcacagaccgactccttactggccatgttcgatcccctctcctctgccgaaggctct
tccactggaacaattgtgaggcccaaagtgcactacgccaggccggctcaccctccacct
gaccctcccatccctgaggccagcgccctggggccagagacgcgccactctctgttcatg
ccccactgcctggcccaggctgagctggagcacaccaagcagcgccactccttccctgac
aagctggtccgcagccgcagctctgacatagtgtgcccagggcgtcggcccacgagcgac
cccggcctgaaccgacgggtagcagttgaagagcgcgaccctgccggggccttcgcctta
ggaccctcctcgtcccccagcaaggactccctgaaaggagaggttgaggacaggaaagac
agtgacgacgagaagtctgatcgcaacagaccctggtggaagaaacgttttgtgtcagcc
atccccaaagtgctgtattggacggctgagagtgatgtcccagctccaatcgcagcattt
cggaaaagggacaaacaagagaaagatgacgttgtccaggagcgtatttcacaagttttg
tcagatgacctgttgcccagacagagcagtcaagcacaggcagctgaagacatcctcgac
aagtacaggaacatcaagaggcccagcccaagtgatggagcagcaactggagcttcctat
gacggtaccggagatctttgtgttgaagacaacgtacacgactctccaagagaagacact
ctgcagaatatgtccacagatgacctcccagactcggccagccagtcagcaaatcagcac
gactccaagttctctttcagtgatgcaaagaagaagttgaggttagcgctgtgttctgca
gactctgtggctctgcccatcatggctcctgcaaccacacgaaatgggctgcctgatcac
atggataccgaagacaatgagatcgtctgcttcctgaaggtccagctcgcggaagccatc
aacctccaggataagaaccagatggcccagatccaggagaccacacgctgcgtcggccgc
ttcgatgcacgcacctgcaggaagctgctggctgccattgcggaggattacagaaagcgg
gcaccgtacatagcttatttaaccaggtgtcgtcagggcctgcagacctctcaggctcat
ctggagcggctcctccagagggtgctcagagacaaggaggttgcgaaccgctacttcacc
actgtctgtgttcgactccttcttgaacacatggaatccaagatgcttgactttactaag
gcgttccagggttgcacagcgtcggatgacaagacagcagcagtggaggattttctgcgc
tacttgtacggtgctatggcccgtgatgccatttggcagtatgcaagcgaggaccagctg
caggatgcccagatggctatcgagcgcagcgttatgaaccgcatcttcaaactggctttc
taccccaaccaggatggagatattctcagagaccagcttctccatgaacacatccagcgg
gtctcaaaagtagtgacggccactcataaagctcttcaaatcccagaggtttacttgagg
gaggctccctggccgtctgcacagtctgagatcaggaccatcaatgcatacaagacgcca
cgggacaaagtccagtgtatactgcgcatgtgttcaaccatcatgaacctcctcagtttg
gccaatgaagactccgtccctggagcggacgactttgtccctgtcctcgtctttgtcctc
ataagggcaaacccgccctgcctgctgtccaccgttcagtacatcaataatttctacgcc
agccggctgagtggggaggagtgctattggtggatgcagttcaccgcggcggtggaattc
attaagaccatcgacgatcgcaagtga
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