Hippoglossus hippoglossus (Atlantic halibut): 117767503
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Entry
117767503 CDS
T07778
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
117767503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117767503
Membrane trafficking [BR:
hhip04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
117767503
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
117767503
RAVE complex
117767503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_EML
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
117767503
NCBI-ProteinID:
XP_034451112
LinkDB
All DBs
Position
9:complement(8471861..8519790)
Genome browser
AA seq
3093 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSIVCVFEPVQHPDQKDPPLTKLNCQWQKTGQFVLPSMVRNLAW
HPTGSTLLTGSTSLQLWSHVDSVKDEAEERGKPEEMTMTDSHCSWRCIWESKTASPVSLM
RFSPDGEFFATAGQDDCLVKVWYSTSKWKSGVSRLFTPAHPSVSVQGELAFSFVYLAHPR
SVTGFSWRKTSTCMPRGAVCNVLLTCCKDSVCRLWAETLLPGDSLLYGPHQNHGSGQLSD
TLRCAGPTRKHACNGKTQGNTAQELSFQESWHLSSYQDVPQPSLTGCLSNHQSCHYNHKR
INSNMPHANALCHFHIAASINPATDIPLLPSISSLSSADDEEPGGPFTVHWLNNKELHFT
LAMEVFLQQLRGSLEQQNGCSHEEPEDEDNSDDEDNGSRPTDPHGPEGGELPLAAVEHQV
DVLLEEWNKGADMLFSIHPMDGSLLVWNVDWLDEYQPGMFRQAQVSFVSRIPVAFPAGDA
ISLSHSVVMYACNKNVDLAIQHGRQRPSGSTLPQAKSALISYRDQGKTLPSSSLRLNIFT
PNVLMISKHADGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLT
TSHHNALRTPEVDSILAPPEVVSTSLPRGSRASRLSLGVVSQDPNAIYSELILWRVDPVG
PLSLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGVYCNSPSACFVASDGHSLRLYQ
AVIEAKKLLGELSNPEISKNVGEVFNMISQQSTAKPGCIIELDAITDFQGKETQLLHVFE
EDLILGSERTESTQGNPDSPRTASGEPTFSARFFLVVVELTPTGRSLLHMWHLHLAARPI
TMEETKTEKDATTASPMNSSQFDFDTFSSPVTQKSKTCTSSLQSACRLILTTHRLYSQEM
ALPEGVEAISVTPSAGHLSASCSLPAGRVPYLLATSCSDGKVHFWRCNVVATGPSSMDTL
LYQWEEWPLLLEDRFPNSSTVSVPGRPIEVSCCHTGRIAVAYRQTPNTSLNSTLHLNSNG
LLTSPPTLASTPYSTHLTPTLTVQRSSNPTPSPNIVNIREPLVHISIFQCESTGGSQWIL
EQTIVVDSADPTPNCGTTKMDFSLPNENCLGSTSKSLVHLDWVSQEDGSHVLTVGIGTKI
YMYGRLSGKPPELGLSSEASREQSLSRLVLLRSVGLVSSVEGSLPIPVSLSWVRDGILVV
GMDCEMHVYSQWQLPTPPRPSAVINQDTDISSSVSSIISAVRQSQEEALSPGAPVSALAP
PKKALTRSMMSLAQKLSGKRTAYDLPVEMEDSGLFEAAHQLFPTLPQYHPVQLLELMDLG
KVHRAKAILSHLVKCIAGEIVPLKDSTANPERRVRSRTIGAGGSTARDPKMFNITENSAP
DYTEISSIPPLPLYALLAADEDTSRKTDTVGSVSGDSGHCSSHTDAYDELFHTPSIVDLD
PLDNDEEETGNKVIDLSQYSPTYFGPEHAQVLSSHLLHSSLPGLTCMEQMSLMALADTIA
STSTDLKGSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGLSTCHYAW
AFHSEAEEELLNMLPALQKGETTWPELRSMGVGWWLRSTNKLRRCIEKVAKASFLRSNDP
LDAAMFYLAMKKKAVVWGLYRSQNNAKMTDFFRNNFTEDRWRKAALKNAFSLLGKQRFQH
SAAFFLLAGSLKDAVEVCIEKMQDLQLALVISRLYESEFETSSTYKKILQRHVLGHDKQI
PAHQNPFLRSMAHWVLEDYSRALDSLIEQPANSNSSGSTESKCVTGSSSVATCNPEVFNF
YTYLRTHPLLLRRHFGSSDKAKVGLTAEGRRADSISLEERRLFFTAAYAHLQAGCPMLAL
EVLFKMPKVHKHSKLLNQEDTGITAELSARSKDGQASDWSQPSLNGYESDGNSLSNSKSD
SVLSFDWSQPSLKLPGDALELKWDSDKDDEEEDEDEEEFKNANTGTIADSSSVFQDTQDV
MSPLMETVIGEDSEDSNDFLAPSDDILVAQLKFTACLKIMTNELRTLSTGYEVDGGKLRY
QLYQWLEREVVALQRCCSYKPCLPELSVQGDACVSGLAEEEEQPGSPRGDSQRSRRHWLQ
SNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDDSIQSVVTTSSQPSSIPLLM
ACTANVKTVVANPIVYLTNLTHDILQTINALDSPPHPDVVNNEIYVMHTLAASLSACIYQ
CLCDGHTFSHVNHFTGIVYQSVLLSQKQPVRAVSVDESVQPNTSPAQWPGIASLIRLLSS
AGEESQPGLAVLLCEILTAVYLSLFVHGMATHSSNELFRIMAHPLNGKLWVTVFGGGARI
PVMEKPNGPTRTPPPASPSGSDRKSRRFRLLTSRSGSKEESGIEREGPSSPKHVPVVEQE
AASIFKERFVPPDLSIWDYFIAKPLLPPSENRIEYDSEESHGSQDEDEDDDDFEDVFDPN
SPRREHSNHNSYSWCLMRLSMVQLVLVNLKSFYPMAGYDLLDLPVGSPLCHAVLKTLQRW
EQVLQKRLELFGGPPSKYISTQLQDETATPGPALLRHKVLFEPSNTPFRTNHHSALPVKR
LWQFLVKQEEVQETFIRNIFTKKRDPNESVEDQTGNMKCSVMEETGNHQTGSELGCPGGK
ARIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDDVETKGVG
GDDFLVIHARDDFTALHGTTPYTHSSPGTPINMPWLGGMQTGRGAAMMIKRNINNVRRMT
SHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGGL
SLWQTNTSGNAPKPFLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPAN
SLAHAFCCHESGATVLAMAPRQQLLLTGGRKGWISVLELPQRHQRQSFQAHDSPVKALAV
DVIEDCFISGSAEGNIKVWSLATQCLLFSFPNEHARQSLFRNLGTGVMQIEVGPANHIFS
CGADGTMKLRVLPNRYSVGNNNNNLKNDVKFII
NT seq
9282 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcacaggggctgtcaacccaggggacaattgtttctctgtc
gggagcgtcaacaatgtgccattcacggcctatgcgtcaggttgcgacgtggtaattttg
ggcagtgactttgagcgactgcagatcatcccaggagccaaacatgggaacattcaggtc
ggctgtgtcgactgctcactgcagggtggacagattgcagcttcctatggaagcattgtg
tgcgtctttgagcctgttcagcacccagatcagaaagatccaccgttgactaagttgaac
tgccaatggcagaagacgggtcagtttgtattaccttctatggtacggaaccttgcctgg
caccccacaggtagcactctcctaacaggctctactagcctccagttgtggtctcatgtt
gactcagtgaaagatgaagctgaagaacggggaaagccggaagaaatgacaatgacagac
tctcattgttcctggaggtgtatctgggagagcaagacagcctctccagtcagtttaatg
cggttctcacctgatggggaattctttgctactgctggacaagatgactgcttagtaaag
gtctggtacagcaccagtaagtggaagtcaggtgtttccagactcttcactcctgcacat
cccagtgtcagtgtccagggagagctggccttctcctttgtctacctggctcacccccgt
tctgtcacgggcttctcgtggaggaagaccagcacgtgcatgccacgaggtgcagtgtgt
aatgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggcagagacgttgttg
cccggtgacagcctcctgtacggtccccaccaaaaccacggctctggccaactcagtgac
acactcagatgtgcaggtcctacgagaaaacacgcctgtaatggaaagacccaaggaaat
acagcacaggagttgagttttcaagaatcatggcacttgtcctcttaccaggacgtaccc
caaccctccctgactgggtgcctgtccaaccatcagagctgccactacaaccacaagagg
atcaacagcaacatgccccatgccaacgctctctgccacttccacattgctgccagcatc
aacccagccacagacattcctctgctgccctcaatctcctctctgagtagcgcggatgac
gaggaacctggaggtccttttaccgtccactggctgaacaacaaagagcttcacttcact
ttagctatggaagtcttcctgcagcagctcagaggcagcctggagcaacagaatggctgc
tcccatgaagagcctgaagatgaggataactctgatgacgaggacaatgggagcagacca
actgacccccacggacctgagggtggggagcttcctctggcagcagtggagcaccaggtg
gacgtgctgctagaggagtggaataaaggggctgacatgctgttcagtattcaccccatg
gacggctccctgttagtctggaatgtggactggttggatgaataccagccagggatgttc
agacaagctcaggtgtcgtttgtgtcccgtatccctgtggcattcccggctggtgatgcg
atctccctgagccacagcgttgttatgtatgcctgcaacaagaacgtggatctggctatc
caacatggcagacaacgaccgtctgggagcacattgcctcaagctaaatctgctctaata
agctacagagatcaaggaaaaactctgcccagcagtagtcttcgactcaacattttcacc
cccaatgtcctcatgatctccaaacacgctgatggttccctgaaccagtgggcagtcagt
ttcgcagaggactctgctttctccactgtcctcagcgtctcacacaagtcacggtactgt
ggccaccgcttccacctcaacgacctggcctgtcactcgttactcccgctcctcctcacc
acctcacaccacaacgccttgaggacaccagaggtagacagcattctggctcctccagag
gttgtttcaacatcgctgccccgtgggtcacgggccagccggctgtccctcggtgtggtt
tcccaagatcccaatgcaatctacagtgagctgattttatggagagtggaccctgttggc
ccgctgtctctgtcaggcggggtctcggagctcgcgaggatcaattctctccatgcatca
gcattcgctaacgttgcctggttgcccacactcattcccagcagctgtttaggtgtatac
tgtaactcgcccagcgcctgctttgtggctagtgacggacactcgctcaggctgtatcag
gccgttatcgaagccaagaaactcctgggtgaactctccaaccctgagatctcaaaaaat
gttggggaggtgttcaacatgatcagtcagcaatccacagcaaaaccaggctgtataata
gagctggatgccattactgactttcagggaaaggagacgcagctcctgcatgtttttgaa
gaggatctgatccttggcagtgagagaacagagagcacacagggcaatcctgattctcct
cgcactgcctccggtgagccaaccttctcggcacgttttttcctggtggtggttgaatta
actccgacaggtcgctccctcctccacatgtggcatctccatcttgctgctcgaccaatc
accatggaggagaccaagacggagaaagatgccaccacagcttctcccatgaacagttcc
cagtttgactttgacacgttcagttctccagtaactcagaagagtaaaacctgcacttcc
agtctgcagagtgcttgtcgcctcatcctcacaacgcacagactttacagccaagagatg
gctcttccagaaggtgtagaagccatcagtgttacaccctcagcaggtcacttgagtgca
tcctgttctctgccagctggccgtgtgccttatctccttgctacttcctgttctgatggt
aaggtgcacttctggaggtgtaatgttgtggcgacaggaccctccagtatggacaccttg
ttgtaccagtgggaggagtggccactcctgctggaggacaggtttcccaacagcagcaca
gtaagtgtgccaggtcgccccatagaggtcagctgctgtcatacaggacggattgcagtt
gcctacaggcagacgccaaacacatctttgaattcaacacttcatctgaactctaatgga
ctgttgacgtctcctcctaccctggcatccactccctatagcacccacctgaccccaact
ctgactgtacagcgtagctcaaatcccaccccaagccccaacatagtaaacattagagaa
cctttggtacacatcagcatcttccagtgtgagtccaccggtggttcacagtggattctc
gagcagaccatcgtcgtggacagcgcagatcccacacctaactgtggtacaactaaaatg
gacttctctttacctaacgagaactgtcttggttccactagtaagagccttgttcatttg
gactgggtgtcccaagaggacgggtcacatgttctgactgttggtattgggaccaagatt
tatatgtacggccgtctttctgggaaacctccagaactgggtctgtcgtctgaagcaagt
agagaacagagcttgtctcgtctagttctgcttcgatcagtcggtctggtctcctcagtt
gaaggctcattacccatcccggtctccctctcctgggtacgagacggcatcttagttgta
gggatggactgtgagatgcacgtttactcccagtggcagctcccaacaccacccagaccc
agtgctgtcattaaccaagacaccgacatcagcagcagtgtctcctccattatctcagct
gtcagacagagccaggaggaggcactcagtcctggtgctcctgtgtctgcactagctcct
cccaaaaaggccttgacaaggtcgatgatgagtctggctcagaaactcagcgggaagagg
acggcttatgacctgcctgtagagatggaagattctggactttttgaagcagctcaccaa
ctctttcccactctgccgcaataccatcctgtacaattactggagctcatggatcttggg
aaagttcatcgtgccaaagccatcctctctcacctcgtgaaatgcattgctggagaaatt
gtgccacttaaagacagtaccgccaatccagagagacgtgtgcgctctcgaaccatcggt
gccggtggaagcacagccagggatccaaagatgttcaatatcacagagaactctgcccct
gactacacggagataagctccatccctcccctgcctctgtacgcccttctagcagctgat
gaggatacatcacgaaaaactgatacagtgggcagtgtgagtggagatagtgggcactgt
tccagtcacacagatgcttacgatgagctcttccatacacccagcatagtggacctggat
cctctggacaatgatgaagaggaaactggaaacaaggttattgacctgtctcagtacagt
cccacatactttggtccagaacatgcccaggttctgtccagccacctccttcactccagt
ttgccaggattaacttgtatggagcagatgtctctcatggcgttggccgacaccattgct
agcacaagcacagacctcaagggcagccagggcaaaagcaaaggtggagagacactggat
gagtgtggtctgaagttcttgctggccgttagactgcacaccttcctctctacctccctg
cctccagcgcaccgagcacagctgctacggcaaggcctgtcaacgtgtcactatgcctgg
gccttccactctgaagctgaggaggagctgttgaacatgctccctgccctacagaagggg
gagaccacctggcctgagctacgctccatgggtgtgggctggtggctgcgcagcaccaac
aagctacgcaggtgtattgagaaggttgccaaggcttcttttctgaggagcaacgatcca
ctggatgcagctatgttttaccttgcaatgaaaaagaaggcagtggtctggggattgtac
aggtctcagaacaatgccaaaatgacagactttttccgcaacaacttcaccgaggaccgg
tggagaaaggcagcattgaaaaatgccttttcactattgggaaagcagcgcttccagcat
tctgcagcattctttcttctagctggctccctgaaggatgctgttgaggtttgtatagag
aaaatgcaggacctgcagctggctctggtgatctccagattgtatgagtctgagtttgag
acgtcatccacctacaaaaagatcctccagagacacgttctgggtcacgacaaacagatt
ccagcccaccagaacccgttcctgcggagcatggctcactgggtcctggaggactacagc
agagccttggactctttaattgagcagcctgcgaacagcaacagctccgggtccactgag
agcaaatgtgtcactggttcctcttctgtggctacatgcaaccctgaagttttcaacttt
tacacctacctccgcacacacccactcctccttcgccgccattttggctcgtcagacaag
gctaaggttggcctgactgctgagggtcgccgggctgactccattagcctggaggagaga
cgactgtttttcactgctgcatatgcacatttacaagctggctgccccatgcttgcactt
gaagtcctcttcaagatgcccaaagtccacaagcattccaaactcctgaatcaggaggat
acaggaatcaccgctgagctcagtgccaggagtaaagatggacaagcatcagactggtcc
cagccgtctctgaatggctacgagtcggatgggaacagcttgtccaacagtaaatcagat
tcggtgttgagttttgattggagccagccatcactgaaacttccaggggacgccctggag
ctgaagtgggacagcgacaaagatgatgaagaagaggatgaggacgaagaggagtttaaa
aatgctaacactggtacaatcgcagacagcagcagtgtgttccaggacacacaggacgtc
atgtcaccgctaatggagacagtgatcggggaggacagtgaggacagcaatgacttcctg
gcgccatctgatgacatcttggtggctcagctgaagtttactgcctgcttgaagattatg
accaatgagctgcggacgctgtcgaccgggtacgaagtcgatggggggaagctgcgttac
cagctctaccagtggttagaaagagaggtggtggctctccagcgttgctgcagctacaag
ccctgcctgccagagctgtctgtccagggtgatgcctgtgtttctgggttggcggaggag
gaggaacagcctgggagccctcgtggtgacagccagaggagcaggagacactggctgcag
agtaaccagcccttgctgaggatgtttcttagctactgcagcttacatggctcccacggc
ggaggactggcttctgtacgcatggagctcatattgcttcttcaggagtctcaccaggat
gactccatccagtcagtggtgacgaccagttcccagccctcctctatccctctccttatg
gcctgcacagccaacgtgaagacagtggtggccaatcccatcgtctacctgaccaacctt
actcatgacatcttgcagaccatcaatgcacttgactcacctccacatcctgatgtggtt
aacaatgagatctatgtgatgcacaccttggctgcttccttgtctgcctgtatatatcag
tgtctgtgtgacggacacaccttcagccatgtgaaccatttcaccgggattgtttaccag
agtgtgttgctgtctcagaaacagccagtcagagctgtcagcgtggacgagtccgttcag
cccaacacttctcctgcacagtggccaggtatcgcctctctgatccgtctgctgagctca
gcaggtgaggagagccagccaggcttggccgtgctgctctgcgagatcctgactgccgta
tacctcagtctgtttgttcacggcatggccactcactccagcaacgagctgtttcgcatc
atggcccaccctctcaacgggaagctctgggtaacagtgttcggaggaggtgcccggatc
cccgtcatggagaaacctaacggcccgacaagaacacccccaccagcttctccgagcggc
tcagacagaaagtccagacgattccggcttctgacatcacgcagtgggtccaaagaggag
tctgggatagagcgggagggaccatccagtcccaagcatgtccctgtagtggaacaagag
gctgcctccatctttaaagaaagatttgttcctccagacctcagcatttgggattatttt
attgccaagcctttgctgccaccatcagaaaacagaatagagtatgactctgaggagagc
catggcagtcaggatgaagacgaggatgacgatgactttgaagacgtctttgaccccaac
tctccgcggagagagcattcaaaccacaattcatacagttggtgtttgatgcggctgtca
atggttcagctggtgttggtcaatctgaagtccttttacccaatggcaggatatgatcta
ttagatctgcctgtgggctctcctctgtgtcacgctgtgctgaagacgctgcagcgctgg
gagcaggtgttgcagaaaagactggagctgtttggaggacctccttccaagtacatctcc
acacagctccaggatgaaactgccacacccggccccgctctgctcagacacaaggtcttg
tttgaaccgtccaacaccccattcaggaccaaccaccattcagcgctgccagtgaaacgt
ttgtggcagtttctggtcaagcaggaggaagtgcaggagactttcattagaaatatcttc
accaaaaaacgggacccgaatgagtcggtcgaggaccagactggcaatatgaaatgttca
gtgatggaggagacaggaaatcatcagactgggtcagagctgggctgccctggaggaaaa
gcacgcatcatccacaaagaatctgacatcatcacagcctttgccatcaacaaggcaaat
cgtaattgtctagtcatggcctccacacatgacattcaggagctggatgtgtcatctatc
ttggccacacaaattttgacatggatagacgacgatgatgtcgaaaccaaaggtgttgga
ggtgatgacttcctggtgatccatgcacgtgacgacttcaccgccctccatggcaccacg
ccgtacacccacagtagccctggcacacccatcaacatgccgtggctgggaggtatgcag
acaggccggggggcagccatgatgatcaagagaaatatcaataatgtgagaagaatgacc
tctcatcccacactgccttactacctgacgggggctcaggacggtagcgtgcggatgttc
gagtggggtcactcccagcagatcatctgcttcagaagtcctggcaactccagagtcacc
aggatccgattcaaccaccaaggcaacaagttcggtatcgtagatgctgatggaggtttg
agtctctggcagaccaacacaagtgggaatgcacccaaaccattcctgacgttgcagtgc
cacaacaagacggctcatgacttcgtctttgtgggctcctcctccctcatcgccactgca
ggtctttcaacagacaacaggaacgtgtgtttgtgggacactctggtgactcctgctaac
agcctcgcacacgctttctgctgccacgagtcgggtgccaccgtgctcgccatggccccc
cgacagcagttgctcctcacaggcgggaggaaaggctggatcagcgtcctggagcttccc
cagaggcaccagcggcagagcttccaggcccatgactctccggtcaaagctctggccgtc
gatgtgattgaggactgcttcatcagtggatcagctgagggcaacatcaaggtttggagc
ctggccacgcagtgtctcctcttctcgtttccaaacgagcacgcccgccagtcgctgttc
aggaacctgggcacgggcgtcatgcagatcgaagtggggccggccaatcacattttctcc
tgcggcgccgatgggaccatgaagttgagggtcctccccaaccgctacagtgtcggcaac
aacaacaacaacctcaagaacgatgttaaattcatcatatag
DBGET
integrated database retrieval system
