Hippoglossus hippoglossus (Atlantic halibut): 117767594
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Entry
117767594 CDS
T07778
Symbol
smarca2
Name
(RefSeq) LOW QUALITY PROTEIN: probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117767594 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117767594 (smarca2)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117767594 (smarca2)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117767594 (smarca2)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117767594 (smarca2)
Chromatin remodeling factors
BAF complex
117767594 (smarca2)
PBAF complex
117767594 (smarca2)
GBAF(ncBAF) complex
117767594 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
117767594
NCBI-ProteinID:
XP_034451255
LinkDB
All DBs
Position
9:complement(1780403..1826838)
Genome browser
AA seq
1604 aa
AA seq
DB search
MSTPSDTPGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QGQGDYSQDSMYPMHKPMEGMNDKTMADAMHFGHMKGVGMRSLHSGMGPPQSPMDQHSQG
YLSPHPSPMGVHEHSSSPMSGGGGGGGGGGGGGPTPPHMTPSQSGPMMPMDPQGGMPSMS
NMGQQARGPSAFNPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPIMQQQQQQQ
QQQQQQQQPPPSASPYNRPPGMAMAPLGGPQLSPCPTPTMQGHNQSLGPKPWSDGPGGDN
QANAQKHLTPASSGRPSPAPAQAVAVPTGPMPGGSVAPQPPGQQVSPMLQMQQKQNRITP
IQKPQGLDPVGILQEREYRLQARIAHRIQELESLPGSLPPDLRSKATVELKALRLLNFQR
QLRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQE
YLNSILQHAKDFKEYHRSVSAKVQKVTRAVVNWHTNTEREQKKETERIEKERMRRLMAED
EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKRKKKKKKKVDGDG
EGTSAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAP
RSDSEESGSEFEDEEEEEGAKAETEEQKIIDPHGNVVTVKVAKHIIESAKQDVDDEYSVP
TGQTSSQSYYGVAHAVIERVEKQSSLLINGMLKHYQVQGLEWMVSLYNNNLNGILLMRWA
LGKTIQTIALITYLMENKRINGPFLIIVPLRTLSNWESMNLTSGQPSVVKIAYKGTPGLR
RGLVPQLRSGKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY
VAPRRLLLTRTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET
ILIIRRLHKVLRPFLLRRLKKEVESQLPEKVKYVIKCDMSAIQKVLYRHMQKGILLTDGS
EKDKKVNMPRLLVKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHMGYPNGIISGPDL
YRASGKFELLDRILPKLHATNHRVLLFCQMTTLMTIMEDYFSYRNFQYLRLDGTTKADDR
ALLLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQ
QNEVRVLRLCTVNSVEEQILAAAKYKLNVDQKVIQAGMFDQKSSSHERRVFLQAILEHEE
QNEEEDEVPDDETLNQMIARLEDEFELFMRFDMDRRREDARNPKRKPRLMEEDELPSWII
KDDAEVERLTCDDDEDKLFGRGSRCRRDVDYSDALTEKQWLRAVEDGNLEEMEEEIRLKK
RKRKRRPEKESSSRDEGSSKAKKKRGRPPAEKLSPNPSKLTKQMNTIIDTVINYRDGAGR
QLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVRSHKYRIIGDLEKDVMLLCHNAQTF
NLEGSQIYEDSIVLQSVFKSARQKIAKDEESDDDSEEDDDDEDESEAEAKSVRVKIKLSK
EARSYDKGKKRQSRGKAKPVVSDDDSDDDQDDNDQSDKSKSDDE
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccctcagacacaccaggtggtatgtcccatcctggcccttctccgggggcc
ggtctctccccagggcccatcttgggccccagccctggaccggacccttcccccggctct
gttcacagtatgatgggacccagtcctggaccgggaacacccaatgcaccccatggcatg
cagggccagggcgattactctcaggacagcatgtatcctatgcacaagcccatggagggg
atgaatgacaagacgatggcagacgcgatgcactttggtcacatgaaaggtgtggggatg
agatctctgcatagtgggatggggcctccacagagtcccatggaccagcacagccaagga
tacttgtctccccatccatcccccatgggtgtccatgagcattcttccagccccatgtcg
ggaggtggaggaggtggaggaggtggaggaggtggcggtcccacgccaccccatatgacg
ccctcacagtcaggccccatgatgcccatggatccccagggaggcatgcccagtatgtcc
aacatgggccagcaggcgcgaggaccttctgcattcaacccggtccagctgcagcagctc
agagctcagatcctggcctacaagatcctgggccgcgggcaacccctgcctgaaaacctc
caactggctgttcagggcaagaggagcctacccataatgcaacagcagcagcagcagcaa
caacagcagcagcagcagcagcaaccgccaccaagtgcgagtccgtacaacaggcctccg
ggaatggcaatggcacctttgggtggaccccagttgagtccctgtccgaccccgaccatg
caaggacacaatcagagcttaggacccaagccttggtctgatggtccaggtggtgataat
caagccaatgctcagaagcacctaacccctgcttccagtggacgcccgtccccggcacca
gctcaggctgttgctgtgccgactgggccgatgccaggcggctcagtggcccctcagcct
cccgggcagcaggtgtcccccatgctccagatgcagcagaagcagaaccggatcacgccg
atccagaagccccaaggtttggacccagtgggaatccttcaggagagggagtacagatta
caggctcggatcgctcatcggattcaggagctggagagtctgccgggctcgctgcctccg
gacctgaggagtaaagccacagtggagctcaaagctctgcgcctgctcaactttcagcga
cagctgaggcaggatgtggtggcgtgcatgaggcgagacacaaccctggagaccgccctc
aactcgaaggcgtacagacgcagcaagcgccagacgctgagggaggcccgcatgaccgag
aagctggagaagcagcagaagctcgagcaggaaaagaagcgcaggcagaagcatcaggaa
tatctcaacagtatccttcagcatgccaaggacttcaaggagtaccaccgctccgtgtcc
gccaaagtccagaaagtcaccagagccgtcgtcaactggcacaccaacaccgagcgggag
cagaagaaggagaccgagagaatcgagaaggagaggatgaggaggctcatggcagaagac
gaggaaggctacagaaaactcatcgaccaaaagaaagacaagcgtctggcgtacctgctg
cagcagacagatgaatatgtggccaacctcaccacgctggtgtacgaacacaaagctgcc
caggccgccaaggagaagaagaggaagaagaagaagaagaagaaggtggatggagatggt
gaaggcaccagcgccattggacctgacggagagcccatggacgagagcagccagatgagt
gagctgcccgtcaaggtgattcagacggagacggggaaagtcttgcagggaaccgacgct
cccaaatccagccagctggaggcctggctcgagatgaaccctgggtatgaagtcgccccg
cggtcagacagcgaggagagcgggtctgagtttgaggacgaggaggaagaggagggggcc
aaggcagaaacagaggagcagaagataatcgatccccatggaaacgtagtgactgtgaaa
gttgccaagcacatcattgagtctgccaagcaggatgtggatgatgagtacagtgttccc
actggacaaaccagctcccagtcttactacggtgtggcccacgctgtcattgagagggtg
gagaagcagtcgtcgctgctgatcaacgggatgctcaagcactaccaggtccagggactg
gagtggatggtgtcactatacaacaacaatctcaacggcatcctgctgatgagatgggcc
ctcggcaaaaccatccaaaccatcgccctcatcacgtacctgatggagaacaagaggatc
aacggccccttcctcatcatcgttcctctcaggactttgtctaattgggaatctatgaac
ttgacaagtggtcagccgtctgttgtgaaaattgcttacaaggggacccccgggctgcgc
cgtgggctcgtgcctcagctccgcagcgggaaattcaacgtcctgttgaccacctatgaa
tacatcattaaggacaagcaaatactggccaagattcgttggaagtacatgatagtggac
gagggtcaccgcatgaagaaccaccactgtaagctgacccaggtgctgaacacccactat
gtggcaccccgacgtctcctcctcacccgtacgccgctgcagaacaagctgcccgagctg
tgggccttgctcaacttcctcctgcccaccatcttcaagagctgcagcaccttcgagcag
tggttcaacgccccgttcgccatgacaggggagagggtcgacctcaacgaggaggagacc
atcctgatcattcgccgtttgcacaaggtgctccgccccttcctgctgcgcagactgaag
aaggaggtggagtcgcagctgccggagaaggtgaaatacgtcatcaagtgtgacatgtcg
gccattcagaaggttctgtatcgccacatgcagaaaggcatcctcctcacagacggctca
gagaaagacaagaaggtaaacatgccgaggctcctggtaaaaggaggagcgaagaccctg
atgaacaccatcatgcagctgaagaagatctgtaatcatccttacatgttccagcacatt
gaggaatcttttgcagagcacatgggttatccaaacggcataatcagcgggccggatctg
taccgagcttccgggaagttcgagctcctggatcgcatcctgccgaagctccatgccacc
aaccatcgagtcctgctcttctgccagatgaccactctcatgaccatcatggaggactac
ttcagctaccgcaacttccagtatttgcgtctcgatggaaccaccaaggccgacgatcga
gctttactgctgaagaaatttaatgaggaaggatcccagtacttcatcttcctgctcagc
acaagagccggtggcctcggcctcaacctgcaggccgcagacacggtcatcatcttcgac
agcgactggaatccccaccaggacctccaggctcaggaccgcgcccaccgcatcggtcag
cagaacgaagtgcgcgtgcttcgcctctgcaccgtcaacagcgtggaggaacagatcctg
gcagcggccaagtacaaactgaacgtggatcagaaggtgatccaggccggcatgtttgac
cagaagtcctcgagccacgagcgccgcgtcttcctccaggccatcctagagcacgaggag
cagaacgaggaggaagacgaggtgcctgatgatgaaaccctgaaccagatgatcgcccgc
cttgaggatgaatttgagctctttatgcgctttgacatggaccgacgccgggaggacgca
cgcaacccgaagcgtaagccccgtctgatggaggaggacgagctgccgtcctggatcatc
aaagacgacgctgaggtggagcggctcacgtgcgacgacgatgaggacaagctgttcggc
cgagggtcgcgctgccgtcgagatgtggactacagtgacgcgctgactgaaaagcagtgg
ctacgggccgtcgaggacggaaacctggaggagatggaggaggagatccggctgaaaaag
cgcaaacgtaagaggcgaccggagaaggagtcgtcgagcagagacgagggaagcagcaaa
gccaagaagaaacgtggacgtcccccggcggagaagctctcccccaacccctcgaaactc
accaagcaaatgaacaccatcatcgacacggtcatcaactacagagacggggcaggaaga
caactgagcgaggtctttgtccagctgccgtccaggaaggagctgccagaatattacgag
ctgatcagaaaacctgtggacttcaaaaagatcaaggaacgtgtgagaagtcacaaatac
agaatcattggagacctggagaaggacgtgatgctgctctgtcacaacgcacagaccttc
aacctggaggggtcacagatatacgaagactccattgtccttcagtctgttttcaagagc
gcgaggcagaagattgccaaggacgaggagagcgacgatgacagcgaagaggacgacgat
gacgaggatgagtccgaggccgaggccaagtcggtgcgggttaagatcaagctgagcaag
gaggcgcggagctacgacaaaggcaagaagaggcagagcagagggaaggccaagccggtg
gtcagtgacgacgacagcgacgacgaccaggacgataatgatcagtcagacaagagtaag
agcgacgacgagtga
DBGET
integrated database retrieval system
