Hippoglossus hippoglossus (Atlantic halibut): 117767606
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Entry
117767606 CDS
T07778
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117767606 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hhip04990
]
117767606 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
hhip04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117767606 (pdlim5a)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117767606
NCBI-ProteinID:
XP_034451271
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All DBs
Position
9:11857584..11917112
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AA seq
574 aa
AA seq
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MSSNYSVTLLGPAPWGFRLQGGKDFNMPLTISRLTAGGKAAKASIAVGDLVLSIDGIATE
GMNHLEAQNKIKNSADNLSLTLQKASSVPKPPAVAPKDDRSNIIKPVALTHPPPPSHPHP
HPSSPFSKTPRPYGGCGARSEYTPPQSPFAAFIPSPSSAFTPASSYASPPTPPLPPPPPP
VSYPSSASSSPPVLVPPQPSVYNTPINLYSNENACEVAMGQRRGLLESQGGALPLPLQIN
GVPRKHVVETDIHFYHVPTHADASRKRITEDTEDWRPRAGTTQSRSFKILAQITGTEQAQ
DEEAEKAQKANEDVGEPQLNSHETAVVKTMIKVPAASHGQRPRTSLILPSFGMKGNGSAS
VPRAPVPARPVPQPHPTDEDTLVQMAEHIPAGTRTPMCGHCNQVIRGPFLVALGKSWHKE
EFNCAHCRTSLADIGFVEEQGCVYCEHCYEDFFAPTCSRCQAKILGEVINALKQTWHVHC
FQCACCQQPIRNNTFHLEDGEPYCEQDFYNLFGTGCHGCEFPIEAGDKFLEALGFTWHDT
CFACAVCCTTLEGQTFFSKKDKPLCKKHAHTIKI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagcgtcactcttttaggccccgccccctggggcttcaggctgcag
ggagggaaggacttcaacatgcccctcaccatctccaggcttacggctggtgggaaggcg
gctaaagccagcattgctgtcggtgacttggttttgtccattgacggcatcgccacggag
ggcatgaaccacctggaggcccagaacaagatcaagaacagcgctgacaacctcagcctc
accctgcagaaggcctccagtgttcccaaacctccggctgtggctccgaaggacgacagg
tcaaacatcataaaaccagtggccctcacccacccgcctccaccatcccacccgcaccct
cacccctccagccccttcagcaaaacccccagaccttatgggggctgcggcgcgaggagc
gagtacactccgccgcagtcgccctttgctgccttcatcccgtccccgtcctccgccttc
actcccgcatcctcctacgccagtcctccaactcctcctcttcctcctcccccacctcct
gtctcttacccatcctctgcctcctcctcgccccctgtccttgttccgcctcagccgtcg
gtgtataacacacccatcaacctgtattccaatgagaacgcctgcgaggtggccatgggg
cagaggcggggcctgttggagagtcagggcggagcgttgccgctgccgctgcagattaat
ggagttcccaggaagcatgttgtggaaacagacatccatttttaccacgtgcccacgcac
gccgacgccagcaggaagcgcataacggaggacaccgaggactggcgcccgcgcgccggc
accacccagtccagatccttcaagattctggctcagatcactggcaccgagcaggctcaa
gatgaggaagcagaaaaggcacagaaggcaaatgaggacgttggcgagcctcaactcaac
agccacgagactgcagttgtcaaaaccatgattaaagtacctgctgcaagccacggtcaa
cgcccgcggaccagtttgatccttccgtctttcggtatgaagggtaacggcagtgccagt
gtcccgagggctcctgtcccagcccgacctgtacctcagccccatcctacagacgaagac
accctggtccaaatggccgagcacattcctgcagggacccgtacgcccatgtgtggccac
tgcaaccaggtcatccggggaccctttttagttgcactgggtaaatcgtggcataaggag
gagtttaactgcgcccactgccgcacatccctggcagacataggcttcgtggaggagcag
ggatgtgtttactgtgaacactgctatgaagacttcttcgctccaacatgcagccgctgc
caggccaagatactgggggaggtgatcaatgccctcaagcagacgtggcacgtgcactgc
tttcagtgcgcttgctgtcagcagccaatcagaaacaacaccttccatctggaggatgga
gaaccgtactgtgagcaagatttctacaatttgtttgggactggatgccatggctgtgag
ttccccatcgaggctggagacaagttcctggaggccctcggtttcacctggcacgacacc
tgctttgcttgtgctgtgtgctgcaccacgctggaaggccagaccttcttctccaagaaa
gacaaacctctctgcaagaaacatgctcacacgatcaagatttaa
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