Hippoglossus hippoglossus (Atlantic halibut): 117768174
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Entry
117768174 CDS
T07778
Symbol
tmc5
Name
(RefSeq) transmembrane channel-like protein 5
KO
K21988
transmembrane channel-like protein
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hhip02000
]
117768174 (tmc5)
03037 Cilium and associated proteins [BR:
hhip03037
]
117768174 (tmc5)
Transporters [BR:
hhip02000
]
Other transporters
Pores ion channels [TC:
1
]
117768174 (tmc5)
Cilium and associated proteins [BR:
hhip03037
]
Other cilia and associated proteins
Stereociliary proteins
117768174 (tmc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
YebO
TMEM208_SND2
DUF4800
Motif
Other DBs
NCBI-GeneID:
117768174
NCBI-ProteinID:
XP_034452240
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Position
1:7942395..7952387
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AA seq
981 aa
AA seq
DB search
MTSYSNGGFFNAAYHDSETLEVDRRYSNKSRHTNPYPRDDPAWQGDRAETHDGYMSHMTG
GNEASAIVPWRGWQGESWRGIESIPMGLISARPGGPSQHHDLNHSTFQVNPDSQYDRAPS
VRLPSSMSGNMTLRWRGITERRMSMFPGIDPTHVAFTEDAIRNEMENEEQNLVKDLVAMS
TRDRIRAIQDLPMSFEEKKHIRSQVMAFKSSKQSRQFTCFADCSESVSLFFRRCGYSIRS
ARQTLELWQGIMKEIGGKFGTSVLSYFVFLKWLLMFNIFSFLVNFGFITIPLLVYDPLPN
IPPNVSFRGLEILTGAGYFTNTVMYYGGYSNETLVGLVDYNMQLAYFFTITVYMVLCGIA
LIFSMASSFRTNYVLASPASSGAWQLLCSWDFSVTNERAVKQRKNNLCVQLKESLSEKAQ
RELLTLSEKLKHFGVYLGSWLLSTGLAVGCGASIYYLCQYEQQRATDAASWSLLQEAETL
LVPFVVSLMNMVVPLFYSLFNKFEHYSSQRRQIYALVVRNVLLRMSILGVLCYYWMNVVA
TNFSCWESMVGQALYRLVIFDFFFLMLGSFFGEFLSNVIGTTLLPRLGVPEFDIARNVLE
LIYAQTLAWVGIYFSPLLPAIQIVKLFILFYLKKVSLTQNCQPPRRTGRAAQMQTTFIAL
LFFPFFVGALSMVAYTAWSLTPSEQCGPFRGLNNTFSVVGVWIDDLEEIPGSHWVVWIYQ
NVIRSEIFYFLITLIILVIIYMFWQVSQGRKELIGLLRQQIVNEGKDKSFLLDKLQNLQK
SQPTKKPKQKNQKKPKRRSDVHSSGGQSSSNAMFQAFLARQHFEEEEERRSDGGVPVPSD
MSTSSALMQAMLARQRADDLVDDVYQRSDKHLPSSGALTQAMQARQRAEGQERDNSSDAV
MQARQARQRAEEDRIDDTGDPTSSVSNVMMQVMQARQRAEEENRSQWLPAQPQNPAPPGS
SALIQAMLARQQAGNEFDDGY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttacagcaacggtggatttttcaacgctgcttatcatgacagcgagacgctg
gaagtcgatagaaggtattcaaacaaatcccgccatactaacccctatcctagggatgac
ccggcctggcagggtgacagggcagagacacatgacggctacatgagtcacatgacgggc
ggtaatgaggcttcagccatagtgccctggaggggctggcagggggagagctggaggggg
atagagagcatccccatgggcctcatttcagcgcgccctgggggcccttcacagcatcat
gacctcaaccacagcacatttcaggtcaaccctgactctcagtatgatcgcgcgccatcg
gttcgacttccttcttcaatgtcaggcaacatgacactgagatggaggggaatcacagag
cggaggatgagcatgtttcccggcattgatcctacccatgtagcgttcacagaggacgcc
atcaggaacgagatggagaatgaggaacagaacctggtcaaggaccttgttgccatgtca
acacgagatcgaatccgagctatccaggatcttccaatgagctttgaggaaaagaaacat
atcaggagccaagtaatggcgttcaagtcctccaagcaatctcgccagttcacatgtttt
gcagattgctctgagagtgtgtcactgtttttccgcaggtgtggctacagtatacggtca
gccaggcagaccctggagctgtggcaaggcatcatgaaagagattggtggcaagtttggc
accagtgtcctctcctatttcgtgttcctcaagtggctgctcatgttcaacatcttctcc
ttcctggtcaactttggcttcatcaccatcccgctgcttgtttacgaccccttacccaac
atacctccaaacgtgagcttcagaggactggagatactgactggagctggttacttcacc
aatactgtcatgtactacggtggctacagcaatgaaacacttgtgggtctagtggactac
aacatgcagctggcctatttcttcaccattacggtctacatggtgctgtgtggtattgca
cttattttcagcatggcaagctcctttaggacaaactatgtactagcatcaccagcttca
agtggcgcatggcagcttctgtgcagctgggattttagcgtaaccaatgagagagcagtg
aaacagcgcaagaacaacctctgtgtccaactcaaggagtctttgtcggagaaggcccag
agggagctgctaaccctctctgaaaaactgaagcacttcggggtttatcttggttcctgg
ctcctctccactggcttagctgttggctgcggagccagcatttactacctctgccaatat
gaacagcagcgagcaactgatgctgccagctggtctctgctgcaggaggcagagactctc
ctggttccctttgtggtgtctctgatgaatatggtcgtcccgctcttctactcactcttc
aacaagtttgagcactactccagccagcggagacagatctacgctctggtggtcagaaat
gtcctactcaggatgtccattctgggtgtcttgtgttattactggatgaacgtggtggct
acgaatttttcgtgttgggagtccatggtaggacaggctttgtaccgtctggtcattttt
gacttcttcttcctgatgttgggatctttctttggagagtttctcagcaacgtaattggg
accacattactaccacgtctgggggtccccgagttcgacatagccagaaatgtccttgaa
ctcatatatgcacagacacttgcctgggttgggatctacttctctcctctgctgcctgcc
atccagattgtcaagttgttcattttgttttacctgaagaaggtcagcctgacccagaac
tgccagcctccaaggcgaacaggcagggcagctcagatgcaaacaaccttcatcgccctc
ctcttcttccctttcttcgtgggagccttgtccatggttgcatacactgcctggagtctg
actccctcggagcagtgtggtccttttcggggactcaacaacaccttcagcgtggttggc
gtctggatagatgatctggaggaaatccctggttctcactgggtggtctggatctaccaa
aatgtcatcaggagtgagatcttctattttcttatcacactcatcatcctggtcatcata
tacatgttctggcaagtcagtcagggtcgcaaggagttgattggtctactgagacagcag
attgttaatgagggaaaagacaagtcgttcttgttagacaagctccagaacctccagaaa
tctcagcctactaaaaaacctaaacagaagaatcaaaaaaagcccaaacgacgttcagat
gtccactcctcaggcggtcagtccagctcgaatgccatgtttcaggctttccttgctcgc
cagcatttcgaagaggaagaagaaagacgcagcgatggtggagtgccggttccctccgac
atgtccacctccagtgccctgatgcaggccatgttggcccggcagagagctgacgacctg
gttgacgatgtgtaccagaggtctgataaacacctgccatcctccggtgccctcacacag
gccatgcaggccaggcagagggcagagggtcaagagagggacaacagctctgatgctgtc
atgcaggcgaggcaagccagacaaagagcagaggaggacaggatagatgacacgggggac
ccaacatcttctgtgtcaaatgttatgatgcaagtcatgcaagccaggcagagagctgag
gaagagaacaggagccaatggctccctgctcagccacaaaacccagcccccccaggctcc
agtgctctcattcaggccatgttggcccggcagcaggccgggaacgaatttgatgacggt
tactga
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