Hippoglossus hippoglossus (Atlantic halibut): 117768272
Help
Entry
117768272 CDS
T07778
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03030
DNA replication
hhip03410
Base excision repair
hhip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117768272 (pole)
03410 Base excision repair
117768272 (pole)
03420 Nucleotide excision repair
117768272 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhip03032
]
117768272 (pole)
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117768272 (pole)
Enzymes [BR:
hhip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117768272 (pole)
DNA replication proteins [BR:
hhip03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
117768272 (pole)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
117768272 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
117768272
NCBI-ProteinID:
XP_034452387
LinkDB
All DBs
Position
9:complement(18146779..18162645)
Genome browser
AA seq
2291 aa
AA seq
DB search
MVFFKNSGRYRADRGQGGGGDQDQDDGSSALKRLERSQFTDEMDARFDFDRMKEPGEKTG
WLINMHPAEILDEDKRMISAVDFYFIQEDGSRFKVALPFKPYFYIATKRNCEREVISYVS
KKFQGKVAKLEILPKEDLDLPNHLVGLKRSYIKLSFNSLDDLMKVKREISPAVRKNRERE
QSNDAYTSMLSSALSGGHVTSTDEDVRSKSISDQLDNIVDMREYDVPYHVRVSIDLKIHV
AHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYMI
DGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDDEAAMIQRWFDHVQETKPNIFV
TYNGDFFDWPFIETRAGLHGLSMYREIGFQKDNQGEYKSSQAIHMDCLRWVRRDSYLPVG
SHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVMDSETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAMEEEEQIPLEQITNFNEVC
DEIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAVVDEATCAACDFNKPG
ATCQRSMAWQWRGEIMPASRSEFHRIQQQLESEKFPSLFPNGPPRAFHNLNREEQAKHEK
KRLADYCKRAYKKTHVTRLEQRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
SAQDCGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGA
NIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNIM
VKEGFTNDQYHELVDPGSLTYNTRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSK
AANMPDAELFELVSENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVI
SRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMSSLHDLDIRSILDWSYYIERLGSA
IQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQPL
EAGQAADIEDFGRPARPLQPAILISTKRKRASQGEESQVESQVLELTQSWREILGPPPPM
GEAQEELLVWLRYHKKKWELQLRQRKERKKRRRMLDGEAQPVGGGVIRDGPTTGLGSFLR
RTARSILDMPWQIVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGAM
YKKVNRMLPRSNIVYYLYEYCVPEDMYQEHINQINADLSAPDIEGVYETQVPLLFRALVQ
LGCVCMVNKHIVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHMYFYHHSQGHKALF
GLFIPSQRKASIFILDTVRSNQMPNLNNLYTAERTALLEKTTEDLLPPEKHNFEVRAESD
PKAIYRALQRILLNYKEERRGPTLIAVQSNWELRRLSAGMPVLEEFPVVPVHVLDEISYN
VLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINSQGCYSTVCVEMDLQSLAVNTLL
QSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASAHASYDETALCSNTFRILKSMVV
GWVREITQYHNVYADNQVMHFYRWLHSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKRLG
STVVYGNFNRIILCTKKRRTDDAIGYVGYITNSIHSREIFHSLSLSFSRCWEFLMWMDPA
NYGGVKGKLPSNLLPGEEGAKQKKNKRGEGEEDGSEDEDEEEAEVEEDEETDEVEELIES
NWNIMQYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQQAV
GDLSALPGMISFSQEYVSSELTQNFFTITQKIQKKVMGTRSVTQPSELFPVLPGSHLPLK
NPALEFIKYVCQVLSLDANIANQVNKLKRDLLRLVDVGEFSDDAQFRDPCNSYILPEVIC
HQCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYETESVEMALVEALQKKLMSYTLQD
LVCNKCKGVKDANMPLYCRCAGDFDLTFSIKSFSEQITVFQNIASHYNMSFLEETIDWLL
LMNPQVRQSSR
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggttttcttcaaaaacagtgggagatacagagcggatcgaggacaaggcggaggagga
gaccaggaccaggacgatggatcctcggctctcaagcggctggagcgcagccagttcacc
gacgagatggacgcccggttcgacttcgacaggatgaaggagccgggggagaaaaccggc
tggctgatcaacatgcaccccgcagagatcctggatgaagacaagaggatgatcagtgct
gtggacttttatttcattcaggaggatggaagcaggtttaaggtggctctacccttcaag
ccatatttctacatagccacaaaaaggaactgcgagagagaggtcatctcatacgtgtcg
aagaagttccagggaaaggtggcgaagctggaaattctcccgaaggaggatctggacctg
ccgaaccatttagttggcctgaagagaagctacatcaagctgtcgttcaacagcctggac
gacctcatgaaggtgaagcgggagatctctccagcagtgcgcaagaaccgagagagggag
cagtccaatgatgcctacacttccatgttatccagtgccttgtcaggaggccatgtgacc
tccacagatgaagacgtgaggtcaaagagtatctccgaccagttggacaacatcgtggac
atgagagagtacgacgttccctatcacgtgcgagtgtccatcgacctcaagatccacgtg
gctcactggtacaatgtgcgatacagaggcagcgcttacccaccagagatcgtacggaga
gacgatcttgtcgagcgaccagatcctgttgttttggctttcgacattgagacgaccaaa
cttccactgaagtttccagatgctgagtcagaccagattatgatgatctcctacatgata
gacggacaggggtttctaataacaaacagagagatcgtctctgagaacattgaggatttc
gagttcactcccaaacctgagtatgaagggccgttcacagttttcaatgaggatgatgag
gcggctatgattcagaggtggtttgatcacgttcaagaaacgaagccaaacatctttgta
acatacaacggagacttcttcgattggccttttattgagactcgggccggcctccatggg
ctgagcatgtacagggagatcggtttccagaaggacaatcagggggagtacaagtccagt
caggccatccacatggactgcttaaggtgggtaagaagagacagctaccttccagtggga
agtcacaatctgaaggcagcagcgaaggccaaactgagctacgacccggtagagctggat
ccggaggagatgtgccgcatggcgacagaggagccacagactttggccacttactccgtg
tcagatgctgtggccacgtattacctgtacatgaaatatgttcatcccttcatcttcgct
ctgtgcaccatcatccccatggagcctgatgaggtgctgcgtaaaggttctgggactctg
tgtgaggccttgctcatggtgcaggcctttcacgccaacatcgtcttccccaacaagcag
gagcaggtcttcaacaaactgacagatgacggccacgttatggactctgagacgtacgtg
ggcggccacgtggaggcgctggagtccggagtgtttcgcagtgacatcccctgccgtttc
aaaatgaacccggctgcattcgacttcctgcttcaaagagtcgagagaacgatgcgtcac
gccatggaggaagaggagcaaatccctctggagcaaatcacaaactttaatgaggtctgc
gacgagatcaagaagaagctgatttcactgaaggaggttccaaacaggatcgaatgcccc
ctcatctaccatctggacgttggggcgatgtaccccaacatcattctcaccaaccgtctg
cagccatctgctgtggttgacgaggccacgtgtgctgcctgtgactttaacaagcctgga
gccacctgtcagaggagcatggcctggcagtggagaggagaaatcatgcctgccagtcgc
agtgagtttcaccgtatccagcagcaactggagtcagagaagttcccgtcgctgtttccc
aacggtccacctcgcgctttccacaatctcaacagagaggagcaagccaagcatgagaag
aaacgtttggcagactactgcaagagagcctataagaagacacatgtcaccaggctggag
caacgcgtcaccaccatctgtcagagagaaaactccttctatgtggatactgtgagagct
ttcagagatcgacgctacgaattcaaaggactccacaaggtgtggaagaagaaactgtcg
tcagctcaggactgtggagacgctgccgaggtgaagcgctgcaagaacatggagatcctg
tacgagtctcttcagctcgctcacaagtgtattctcaactctttctacggctacgtcatg
aggaaaggggcgcgctggtattccatggagatggctggcatcgtgtgcttcactggagcc
aacatcatcactcaagcccgagagctgatcgaacaaatagggagaccactcgagttggac
accgatggtatctggtgtgtcctaccgaacacctttcctgagaattttgtcgtgaagacg
agtaatgagaagaagcccaaggtgaccatctcctacccgggggccatgctgaacatcatg
gtgaaggagggattcaccaacgaccagtaccacgagctggtcgaccccgggtccctcacc
tacaacacccgggcagagaacagcatcttctttgaggtggacgggccgtacctggccatg
atcctgcccgcctcaaaagaggaaggaaagaagctgaagaagaggtacgctgtgtttaat
gaggacggctctcttgctgagctcaagggttttgaagtgaagagaagaggagagctccag
ctcatcaagatttttcaatcctcagtgtttgaggctttcctcaaaggtaccactctggag
gaggtctacgcatcggtggccaaagtggccgactactggctggacgttctgtacagcaag
gctgccaacatgccagatgcggagctgtttgaactggtttccgagaatcgttccatgtcc
aggaagctggaggactacggagagcagaagtccacgtcgatcagcaccgctaagagactc
gctgagttcctgggagaccagatggtgaaagacgctggtctgagctgtcgctacgtcatc
tcccgaaaaccagagggttcacctgtcacagaaagagccattcctcttgccatcttccag
gcagagcccagtgtgaagaaacatttcctccgtaagtggttgaagatgtccagcctgcac
gacttggacatccgctctatcctggattggagttattacatagaaaggttgggtagtgcc
attcagaaaatcatcaccatccctgcagctctgcaacaggtgaagaacccagtgcccaga
gtgagacatcccgactggcttcacaagaaactcctggagaaaaacgacatttacaagcaa
aagaaaatcagtgaactgttcaccagtgagggcaagagacaggtggcccaccagcctctt
gaagcaggccaagctgcggacatagaggacttcgggcggccagccagacccctgcagccg
gccatcctcatcagcaccaagcggaagcgagcttcccagggagaggaaagccaggtggag
tctcaggtcctggagctcacccagtcctggcgagagatcctgggaccacccccacccatg
ggagaggcacaggaggagcttttggtgtggctgcgctaccacaagaagaagtgggagctg
cagctgaggcagaggaaggagagaaagaagaggaggaggatgctggatggtgaagctcag
cctgtaggtggaggagtgatcagagacggccccaccaccggccttggcagcttcctgcgc
agaacagcccgcagcattctggacatgccctggcagattgtgcagatcgcagagacgagt
caccctggcctgtacaagttgtgggctgtgattggcaatgacctccactgcatgaagctc
aacatcccccgtgtcttctacgtcaatcagaaagtccccaaacaagaggagggagccatg
tacaagaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctctatgagtac
tgtgtaccagaggacatgtaccaggagcacatcaaccagatcaacgcagacctgtcggca
ccagacatcgaaggagtctacgagacacaggtccccttgctgtttcgggctctggtgcag
cttggatgtgtgtgtatggtcaataaacacatagtgagggatctggccggcagggaggcg
gacacttttgatctggagcatctggagatgaggtctctggcccagttcagctacctggag
ccagggagtgttcgccatatgtacttctatcatcacagccagggacacaaggctctgttt
ggacttttcatcccctctcagcgcaaagccagcatcttcatcttggacacagtgcgaagc
aaccagatgccaaacctgaataacctttacactgcagaacgcaccgccctcctggagaag
acgacagaggatctcctgcctccagagaaacacaacttcgaggttcgagctgaaagcgac
ccaaaggccatttaccgcgcactgcagcgcattctgctcaactacaaggaggaacgtcgt
gggcccaccctcatcgctgtgcagtcaaactgggagctgcgtcgattgtcagcggggatg
ccggtgcttgaggagtttcctgtcgttccagtgcatgtgctcgacgagatcagttataac
gtgctggattggcaacggcacggtgcccggcgcatgatccgtcactacctcaacctggac
agctgcctgtcgcaagctttcgacatggccaggtattaccacttgcctgtggggaacttg
cctcaggatgtgtccatcttcggttcagacttgttcctggcgagacatcttcggaaacac
aaccacctgctgtggctgtcacctacagccagacctgacctcgggggaaaggaggctgat
gacagccgtctggtcatggaaagcgacgacagaggttctgtggagatcaactctcaagga
tgctattccaccgtttgtgtggagatggacctgcagagcctggcagtgaacaccctcctc
cagtcgcagcatgtcaacgacatggagggtggagccagtctgggcgtcagtttcgatgtg
atccagcaggcctcgctggaggacatgatgtcaggaaatcagggggcaagcgctcacgct
agctatgatgagactgctctctgctccaacaccttcaggatcttgaagagcatggtggtg
ggatgggtcagggagatcactcagtaccacaacgtatacgccgacaaccaggtgatgcac
ttctaccgctggctgcactccccgagttctctgctctatgaccctgctctgcatcgcacc
ctgcacaacatgatgaagaaggtgtttctacagttggttgcagagtttaaacgtcttggc
tcaactgtggtgtacggaaacttcaacaggatcatcctgtgtactaaaaaacggaggaca
gatgatgcaatcggctacgtggggtatatcactaacagcatccactccagagaaatcttc
cactctttgtccttgtccttctcccgctgctgggagttcctgatgtggatggacccggcc
aactatggcggcgtgaaggggaaactgccctccaacctcttgcctggagaggaaggagcc
aaacagaagaaaaataaacgaggggagggtgaagaggacggcagcgaggatgaagatgag
gaggaagcagaagttgaggaagatgaagagacggatgaggtggaggagctgatcgagagc
aactggaacatcatgcagtacctgcctcaaactgcctcctgtcagaaatacttcctcatg
atcgtctcagcctacattgcagctgtgtaccacagtatgaaagaggagctgagacgtaat
gctcctggagcaacgccagttaagagacgtggaggcagccaggcttcccaacaggcagtg
ggagacctgagtgctcttcctggaatgatctccttctcccaggaatacgtgtccagtgag
ctgacacagaacttcttcaccatcactcaaaagatccagaagaaagtgatgggcaccagg
agtgtgacgcagccctcagagctgttccctgtcctgcctggatcccacctgccactcaaa
aacccagcactggagttcatcaaatatgtctgccaggtcctctcactggacgccaacata
gcgaaccaggtgaacaagctgaagagagacctcctgcgtcttgtggacgtcggcgagttt
tcagacgacgctcagttccgtgatccctgcaactcctacatcctaccagaggtcatctgc
caccagtgcaatttctgtcgtgacctcgacctctgcaaggacccatctgtggcgcaggac
gggtctgtcttgcctcagtggttctgctccaactgccaggcccagtacgagaccgagtct
gtagagatggctctggtagaagctctgcagaagaagctgatgagctacaccctgcaggac
ctggtgtgtaacaaatgtaaaggcgtgaaggacgcaaacatgccgctctactgcagatgt
gccggagactttgacctcactttctcaatcaagagcttctccgagcagatcacggtgttt
cagaacatagcgtcccactacaacatgagcttcctggaggagaccattgactggctgctc
ctgatgaatccacaggtccgacagagctctcgctga
DBGET
integrated database retrieval system
