Hippoglossus hippoglossus (Atlantic halibut): 117768496
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Entry
117768496 CDS
T07778
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117768496 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117768496 (usp39)
Spliceosome [BR:
hhip03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
117768496 (usp39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Spt5_N
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117768496
NCBI-ProteinID:
XP_034452793
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Position
9:13059684..13066310
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AA seq
507 aa
AA seq
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MMVSLKREREAEVDDDDEEDDSDDGAAVKIGRTRVAEDRRSRHCPYLDTINRSVLDFDFE
KLCSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEI
IDSSLEDITYVLKPTFTKQHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQ
AFSNVPPLRNYFLEEENYKGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ
AVVLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKPSIITQAFQGSMRIFSKKLPH
PDLPPEEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFHILGKF
TGSTEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE
YLTEEAQVTEKCTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVIDILPQMI
TLSEAYIQASPPTHCGFVLENVNGTVP
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctctgaaacgagaaagagaagctgaggtggacgacgacgacgaagaagac
gacagcgatgacggagcggcagttaaaataggccgaacacgtgtagcagaagaccggaga
agtcgccactgcccgtatctcgacaccataaacaggagcgtgttggactttgactttgag
aagctctgctccatctctctgtcccacatcaacgtctacgcctgcctcatatgtgggaaa
tacttccagggtagaggactgaagtcccatgcctacactcacagcgtccagtttacccac
catgtgttcctcaatctgcacacactcaagttttactgtctgccagacaactatgagatc
attgactcttcactggaggacatcacttatgtgctcaagccaactttcaccaagcagcac
atttcaggactggacaagcaaggaaaactgtaccgagcctatgatggtacgacgtaccta
ccaggcattgttgggctcaacaacatcaaagctaatgactatgccaacgtggtgttacag
gctttttccaacgttccacctttgcgaaactacttcctggaggaggagaactacaaagga
atccgcaggccaccgggggacatcatgttcctcttggtgcagaggttcggggagctgatg
cgcaaactttggaatccgagaaacttcaaggcccacgtgtctccccatgagatgctgcag
gccgtggtgttgtgcagcaagaagaacttccaaattaccaagcaaggagatgctgtggac
tttatgacgtggttcttgaatgctctgcatggggctcttggaggcacaaagaaaaagcca
tcaatcattacgcaagcatttcaaggctccatgagaatcttctccaagaaacttccacac
ccagatttaccacccgaggagaaagaggcattacttgtgacggaggaataccaggaacag
atgtctgagtccaccttcctgtttctgacacttgacctcccaacagctccactgtacaag
gatgagaaagagcagcttatcatcccccaggtccccctcttccacatcttgggcaagttc
accggcagcacagagaaggaatacaaaacctacaaagagaattttctcaaaaggttccag
ttgaccaaacttcctccgtacctcattttctgcatcaaaagattcaccaagaacaacttc
tttgtggaaaagaacccaacaattgtcaacttccccatcacgaatgtagaccttcgtgag
tacttgacagaagaagctcaagttacagagaagtgcacaacttatgacctcgtcgccaac
gtagtgcatgatgggaaacccactgagggagcctacagaatacatgttctgcatcatgga
actgggaagtggtacgagatgcaggaccttcaggtgatcgacattctcccccagatgatc
acgttgtcggaagcctacatccaggcaagtcctcccactcattgtggttttgtgttggag
aatgtaaatggtacagtgccgtga
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