Hippoglossus hippoglossus (Atlantic halibut): 117768818
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Entry
117768818 CDS
T07778
Symbol
pcdh12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117768818 (pcdh12)
Cell adhesion molecules [BR:
hhip04515
]
Cadherins
Protocadherins
117768818 (pcdh12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
DUF5527
TMEM154
Motif
Other DBs
NCBI-GeneID:
117768818
NCBI-ProteinID:
XP_034453069
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All DBs
Position
10:26130154..26144656
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AA seq
1180 aa
AA seq
DB search
MLLALLLVLGLCSEARSSEPSSIIIKYQVWEEQPAGTQVGRLLDDLRQRDETGPLEDFQV
VEHGKALPFSVSTRDGVVSTQGRLDREELCRGSDLCEVAFSVLYKRQGAMNCLRVRVEVM
DLNDHSPSFPSPLQEVEISETASLRMRIPLDRAVDPDAGPNSLQTYSLSVNQHFALDVTV
GPDGTKQAELVVIKELDREVQNSFDLTLVAWDKGNPLKSGSTLVRVNIQDSNDNSPKFED
GTPTVELSEDTALGTTIINVKATDPDQGANGEVEYSLSKHNHQNVQKLFFVDPQSGAVSL
RAHLDYEAQTSYEVIIQARDRGPNSIPSHCKLHVKLTDINDNAPRIHMTWTPPNSPVATV
LEGTSVDTFLALVMVSDADSGDNGKTIASIQQGSGPFRLKKIHGDNYMIVTDGSLDREKV
MQYNISLLAQDYGDPPLSCVKQLPVLVLDENDNTPVFSTSLYKATVKENNDVGYHALKVE
ANDVDLKLSGRVSYFIHSPKDLDSDTDIFNIHSSSGVISIRQPLDYEESNTYTFIVLAVD
HGHPPLTSTATVQIDVEDMNDNYPVITEPKPRNDVVSLNVPVNADKGEVVTELGNNMEEA
SADFIINQPVREGIVGFMASTLKAEDPDSGLNGEVQYLLAQGNPDGLFWLDEATGQLFVN
TTNATELIGKTFKVGVAVSDMGSPSLTTKVTLEVTFINLKDHLKNSSPGSRAQLSFTMML
AICLGASCLLLLLAIALVTTFCRPEKRDNRAYNCRQAESTYTRHPRRPQKNIRKSDIQLI
PVIRGRKEEVPEDESESQPLAPPPVMSEDVETERQYTLTPSAMNSSFHSQGFPDGDATLP
VTHHCRTLRKPGNIELDGALPLTPATSYRTLRKSRNTSSSSSVSHSSTLKRQAHPEGEEA
EPARSGSQATLRRPRTLEGRGGHEAEHQRMLRNLVRLSMAAFGDSIELSSASPEVQQISQ
LLSLLRQGQLQPKTNFRGNKYSHRNGRYGGQDCSDWQSTKDSGHGESEAGDMDWEPGRDS
PIDPQLEEGLHNLLNHPDDVFSEVTDPSWMARLSLPLAGDYHDNVFVPNGPPSPETEPLP
RDCLDSSSFSTFGKSPEKDGPLGGALLSEVSTLFEMLMTQKADAHPGPRPDVLYRLSAAY
RRSLGLDGNATPAAGNAPRNSGNTEKRPGLAAPSGLYHQI
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggctctgcttctggttctgggtctttgctccgaggctcgctcctccgagccg
tcatcaataatcatcaagtaccaggtttgggaggagcagccggcggggacccaggtcggc
cggctgttggatgaccttcggcagagggacgaaactggtcccctggaggatttccaggtg
gtggaacatggcaaagcccttcccttctccgtcagcactcgagacggagtggtctccacc
caaggccggctggacagggaggagctgtgccgggggtctgacctgtgtgaggtggccttc
agcgtcctctacaagagacaaggtgccatgaactgcctgagggttcgtgtggaggtgatg
gacctaaacgaccacagccccagcttccccagtcctctgcaggaagtggagatctcagag
accgccagcctcaggatgcgaatccctctggaccgggcggtcgatcctgacgcggggccc
aacagtctccagacctactcgctgtccgtcaaccagcacttcgctctggatgtgacggtt
ggtccagatggaacaaaacaagcagagttagtggttatcaaagaacttgacagggaggtt
caaaactccttcgacctcaccttggtggcgtgggacaaagggaatccccttaaatctggg
agcacgttagttcgtgttaatattcaggactccaatgacaatagccccaagtttgaggac
ggcactccaactgtggagctttctgaggacacagctcttgggacaaccatcatcaacgtc
aaggccaccgatccggaccagggagccaatggggaagtggagtattcgctcagtaaacac
aatcatcagaacgttcagaaacttttctttgtggacccacaaagcggagccgtgagtctc
agagcacatctggactatgaggcccagacctcttatgaagtgattatccaggcccgtgat
cgtggacccaattccatcccctcgcactgcaaactgcacgtcaagctcacagacattaac
gataacgcaccgaggatacacatgacctggactccacccaactcccctgtggcgaccgtg
ctcgagggaacctcggtggacacttttcttgctctggtgatggtctctgatgcagattca
ggggacaatggaaaaacgatagcaagtatacagcaaggatccggcccgttccgcctcaag
aagattcatggcgacaactacatgattgtaaccgacggcagcctggatcgagagaaggtt
atgcagtacaacatctcgctgcttgcccaggattatggagatcctcctctgtcttgtgta
aaacaattgcccgtccttgttctggatgagaatgacaataccccggtgttctccacctcc
ttgtataaggccactgtcaaggagaacaacgacgtaggctaccacgctctcaaggtcgaa
gccaacgatgtcgacctgaaactcagtggaagagtctcctacttcattcacagccccaaa
gacctggacagtgacacagacattttcaacatccactcgagtagtggtgtcataagcatc
cggcagcctctggactacgaggaatccaacacctacactttcattgtgttggctgttgac
cacggtcatccgcctctcaccagcaccgccaccgtgcagatcgacgtggaggatatgaac
gacaactacccggtcatcacggagccgaaaccgagaaacgacgttgtgtctttaaatgtg
cccgtcaacgcagacaaaggggaggtggtgactgagctgggcaacaacatggaggaggcg
tcggccgattttataattaatcaacctgtcagagaaggaattgttggatttatggcatca
accctaaaagctgaagacccggactcagggctcaacggggaagtgcagtacctccttgcc
caaggaaaccccgacggactcttctggttggacgaggctacgggccaactcttcgttaac
accaccaacgctactgagctcattgggaaaacctttaaagtgggcgtagctgtatcagac
atgggttctcccagtctgaccaccaaagtgactctggaggtgaccttcatcaacctcaag
gaccatttgaagaactcgtcacctggaagccgagcacagcttagttttaccatgatgcta
gcgatctgcctgggtgcttcatgcctgctgcttctgttggccatcgctttggtgacgacc
ttctgccgccccgagaaacgagacaaccgtgcctacaactgcagacaggctgagtcgacc
tacacccgccatcctcggcggccgcagaagaacatcagaaagtctgacattcagctaatc
cccgtcatccgggggcgaaaggaggaggttcctgaggacgaaagtgaatcccagccactg
gctccgcctccagtgatgtcagaagatgtagaaactgagaggcagtacaccttaacgccg
tcagccatgaactcaagcttccattcccaaggcttcccagacggggacgccactctacct
gtcacccatcactgcagaaccctccggaaacctgggaacatcgaactggatggcgctctg
cctctgactcccgccacatcgtacagaactcttcggaaatccaggaacacgtcgtcttcc
tcttcagtctcacactcaagcaccttgaagcgacaggcccaccctgagggggaggaggcg
gagccggctcgttcggggtcccaggcgactctcaggaggccgaggaccttggagggacga
gggggtcacgaggcagagcaccagcggatgctccggaacctggttcgactctccatggct
gcgtttggagactcgatcgagctctcgtcagcttctccagaggtgcagcagatctcccag
ctcctctccctcctccgacagggtcagctgcagccgaagacaaacttcagagggaacaaa
tattctcatcgcaacggcagatacgggggtcaggactgctctgattggcagagcaccaag
gacagtggacacggagagagcgaggccggagacatggactgggaaccgggacgagactcg
cccatagaccctcagctggaggaggggctccacaacctgctcaaccaccctgatgacgtc
ttctcggaggtcaccgacccgtcctggatggcgagactctctctcccgctcgcaggcgac
taccatgacaacgtgtttgtccccaacgggcctccgtcccctgaaactgagcctcttcca
cgggactgtctggactcctcgtccttctccaccttcggtaaaagtccagagaaggacggc
ccactgggcggggccctcctgtccgaggtcagcacgctgtttgaaatgctgatgacgcag
aaggccgacgcccacccgggcccccgaccggacgtcctgtaccgactctctgcggcgtac
cgacgctcgctgggcctggacggcaacgccacgcccgctgcgggaaacgcaccgaggaac
tctgggaacacggagaagcgtccgggcctcgcggcgccatcaggactgtaccatcaaata
taa
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