Hippoglossus hippoglossus (Atlantic halibut): 117768925
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Entry
117768925 CDS
T07778
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117768925
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hhip01009
]
117768925
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117768925
Protein phosphatases and associated proteins [BR:
hhip01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117768925
Cell adhesion molecules [BR:
hhip04515
]
Cadherins
Protocadherins
117768925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
117768925
NCBI-ProteinID:
XP_034453307
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All DBs
Position
10:26406298..26564689
Genome browser
AA seq
1216 aa
AA seq
DB search
MAALRWEVPMFLAVVLLVSCNAAPTDILYRVPEEQPPNTLIGSLAADRGLPDTGHLYKLE
VGTPYLRVDGKTGDIYTTEIPIDRETLSDCRNLFDGDKCFLEFEVSITDMVKGLGMGPRL
IEGRIEVLDINDNTPQFSSPILSLSIPENTHIGALFSIPMATDRDSGTNGVAEYALTTGP
DADQLFTLQVAVDSDEKLPQLVVMGNLDRERKDSYDLNIRVVDGGKPARASSALLRVTVT
DQNDNAPKFERSHYEAELPENSLLGHSVLQVRANDGDTGINGEIDYSLHQASETVQRLLR
IDRSTGIIYVKGQVDREEESFLKFFVVAKDRGPNSKNSKVLVTINVRDHNDNAPAIEIRG
IGLVTHQDGVANISEDMPIGTAVALVQVSDRDEGENAVVTSVVAGDVPFQLQPASESAND
RKRKYFLQTTTPLDYERVKEYRIEIVAVDSGNPALSSTNSLKVQVTDVNDNAPNFSPAML
EVDFAEGNQPGDKVLDVVATDADSGTNAELAYSIIEHSATRLFEIDSNTGELRVKNLLDR
EDTERYEFRVAAADKGVPSKTGTATVVVNVLDRNDNDPKFMLSGYSFSVIENMAPLNPVG
VVTVTDADKGENARVRLFVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLRAVDSGD
PPRSSYVGVTINVLDENDNAPYVTKPANSSYTYLTPVTQPETRVEVVEAEDIDSGPNAEL
VYTITGGNPFDLFDISPSSGEITLAQEFTGKHNGLHRLVVRVSDKGKPPRHTTALVHVFV
NDTKSNVSVIEALVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVIMVIVAVVV
IRHRLQKDTKSGYQAGKKESKDLYAPKQGPKNGKGKKSKKGKAPKPAKPLEEDEEASLQK
ALKFNLINESVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQ
DLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSSKQPPHRRVTFSTANQAQDLQDASQ
HSYYDSGLEESETPSSKSSSGPRVGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVA
MTGNCTHECTEFGHSDSCWMPGQPSPTRKVSKNAPPLSTFVPYQEMDGQEQLMANGSPKP
LMTEERGTGSGGGSGGGSGSKVANMRFMTPYSSAYPGGGDSSGKDCGLEEIPLSQAVEYH
SATTPTGQTAKREIYL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgaggtgggaggttcctatgttcctggcggttgtcctgctggtttcctgt
aacgctgcacccaccgacatcctttatcgagttcctgaggagcagccgcccaacacgctg
atcggcagcttggcggcagaccggggcctccccgacaccggccacctctacaagctggaa
gtcggcacgccgtatctgcgggtggacggcaagaccggcgacatctacaccacggagatc
cccatcgaccgcgagacgctgagcgactgccgcaacctgtttgatggcgacaaatgtttc
ctggagttcgaggtgtcgatcactgacatggtgaagggcctcggcatggggccacggcta
atcgaaggccgcatcgaggtgctggacatcaacgacaacacgccgcagttctcctcgccc
atcctttccctctccatccccgagaacacgcacatcggcgccctcttctccatccccatg
gccaccgacagggactctggcaccaacggcgtggccgagtacgcgctgaccaccgggcct
gacgccgaccagctcttcaccctgcaggtcgccgtggactcggacgagaagctgccgcag
ctggtcgtcatgggcaacctggaccgcgagaggaaggactcgtacgacctgaacatcagg
gtggtggacggcgggaagccggcgagggcgagcagcgctctgctgcgggtcaccgtcacc
gaccagaacgacaacgctcccaagttcgagaggagtcactacgaggccgaactcccggag
aacagcctgctgggtcactctgtgctgcaggtcagagccaatgatggagacactggcatc
aacggagagatcgactacagccttcatcaggcgtcggagaccgttcagaggcttctgcgc
atcgaccgctccactggaatcatatacgtcaaaggccaagtggaccgcgaggaagagagt
ttcctcaagttctttgtggtcgcgaaagatcgtgggcccaactccaagaactccaaggtc
ctggtgaccatcaacgtcagggatcacaatgacaacgcaccagcgatcgagatccgtggc
attggcttggtgacgcatcaagatggtgtggcgaacatctctgaggacatgcccatcggg
accgcggtggcgttggtccaggtgtccgaccgtgacgagggggaaaatgctgtggttact
tctgtagttgccggtgacgtcccattccagctccaacctgcaagtgagtcagccaacgat
cggaagaggaagtatttcctgcagacaactaccccgctggattatgagcgtgtaaaggaa
tacagaattgaaattgtcgctgtggattctgggaacccagccctgtccagcaccaactcc
ctcaaagtccaggtcactgacgtgaacgacaacgcgccaaacttttcccctgcgatgctc
gaggtggactttgcggagggaaatcagccgggtgataaagttctggatgtcgtggcaacg
gatgcagacagtggcaccaacgcagaactggcctatagcatcatcgagcactcggccacc
aggctctttgagattgactccaacacaggggagctgcgtgtgaagaacctgttggatcgg
gaggatacggagcgctacgagttccgcgtggcagccgcagacaagggggttccaagcaaa
actggcactgctacagtggtggtgaatgtcctggaccgcaacgacaatgaccccaaattt
atgctgagcggctacagcttctctgtcattgagaacatggctccgctcaaccccgttggc
gtggtgaccgtcactgatgctgataaaggtgaaaacgccagagtaaggctgtttgtggaa
ccggacaatgggaagtttgtcatccagaatggcaccggaaccatcctgtccagcatctcc
tttgaccgtgagaaggagagcacctacaccttccgtctgagagccgtggattcaggtgac
cctcctcgatcttcttacgtaggtgtgaccatcaatgtcctggatgagaacgataacgcc
ccctatgtcaccaaaccggccaactcctcctacacttacttgacacctgtcactcagcca
gagacccgtgtggaggtggtagaggctgaggatattgactctggacccaatgctgagctg
gtctacaccatcacaggcggcaacccgtttgacctgttcgacatctcgcccagcagcggg
gagatcacactggcgcaggaattcactggaaagcacaatggactgcaccgacttgtcgta
cgggtcagtgacaaaggcaaacctccacgccacaccactgccctggtccacgtgtttgtc
aacgacaccaagtccaatgtttctgtcatcgaggcgctggtcggacacagcctctacacc
cctctggacagggacatcgctggggatcccaactacgcccttgctcagcgcagcaacatc
ttgtatggcagcctggcaggtatcgctggtgtgatcatggtcattgtagccgtggtggtt
attagacaccggctgcagaaggacaccaagagcggctatcaggccggcaagaaggagagc
aaggacctgtacgctccaaagcagggacccaaaaatggcaaagggaaaaagagcaaaaag
ggtaaagctccaaaacctgccaagcccctggaggaggatgaggaggccagcctgcagaaa
gccctcaagttcaatctcattaacgaaagtgtcaacgacagtcccagaatccacctgccc
ctgaactacccaccaggaagccccgatctggggcgacactatcgctccaattcccccctc
ccctccatccaactgcagccacagtcgccttccgcctccaagaagcaccaggcggttcag
gacctccctgccaccaacacctttgtgggaacaggggacaacaactccacaggctccgac
caatattcggattacagctacaaggccaacccgcccaaatacagcagcaaacagcccccc
caccgccgagtgaccttctccacggccaaccaggctcaggacctgcaggacgcgtctcag
cacagctactacgacagcggcctggaggagtcggagacccccagctccaagtcgtcgtcg
gggccgcgggtcgggcccctggcgctgccggaggaccactacgaacggaccacgcccgac
ggcagcatcggcgagatggagcacccggagaacgacctcaggccccttcccgacgtggcg
atgaccggtaactgcacccacgagtgcaccgagttcggccactccgactcctgctggatg
cccggtcagccttcccccacccgcaaggtgtccaagaacgcccccccgctctccaccttc
gtgccttaccaggagatggacgggcaggagcagctgatggccaacggcagccccaagccc
ctgatgacggaggagcgcgggacgggcagcggcggcggcagcggaggtggcagcggttcc
aaagtggccaacatgcggttcatgaccccctacagcagtgcctaccccgggggcggagac
tcgtctgggaaagactgtgggctggaggagatcccgctgagccaggcggtggagtaccac
tcggcgaccactcccaccggccagaccgccaagagggagatctacctgtga
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