Hippoglossus hippoglossus (Atlantic halibut): 117768972
Help
Entry
117768972 CDS
T07778
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117768972 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hhip01009
]
117768972 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117768972 (pcdh20)
Protein phosphatases and associated proteins [BR:
hhip01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117768972 (pcdh20)
Cell adhesion molecules [BR:
hhip04515
]
Cadherins
Protocadherins
117768972 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
117768972
NCBI-ProteinID:
XP_034453396
LinkDB
All DBs
Position
10:11723544..11727225
Genome browser
AA seq
863 aa
AA seq
DB search
MGHGTPDNMNWAGLLQNLLLLVHLRQIMCASVRFSVLEEQEPGTLVGSLAEHFPPPYQLL
TQDYLWMDRKTGNFYTTEKKMDREALCPEETKAEECIILLYAIVRTSGDLIQFPVIIEDI
NDNTPRFENSDIHLRISEDVTVGTSFLLDDQAQDRDAGLNGDLQYHLEYSDVDDNGVFGL
KVEEDGLFLMLVVQTALDRETKDQYQMVLVATDRGVGPLSVTATLTVTVTDVNDNCPRFS
SDSPSSVTIPGDSPKNMLVAQVRAADPDLGPNAAIAYSLSPKVSERAKKLFSLDSLTGYI
TLTQDLWSDNSEELVLKVLASGHHCPPADTQVTVCVLPKATQELTIKIGFIVEHENQTMV
LPENQPPTVLAVLELEGDSSFKGSSLAIEGEVPFTLSPQNGKYLLSTSKPLDYELKSEHQ
ISVIVHRRSGEVSAVTPSRHVLRLKVADVNDNPPHFPQSHYQLEVVENNQPGIPLLQVSA
SDADSGHNGRVTYTLDKHTSTIFNIDPVTGQLSVSASLDREQQGAHNLTVFARDSGSPPL
ESVTTVSIRVLDQNDNAPVFQTPHFIFFVPENVPPFTQVGRVGVTDPDEGENGNTELHVV
NSSGTFVVDHAQGTLRTNTNLDRETEGHYELYLLASDHGHPVALTSSARVTIFVQDINDN
QPKVILPSSNSSCLTVSPSAVAGSMVTKIHAIDEDSGLNSEITYTAVAPETVQNSSPFQV
DSRSGNITLAQQLLQKDLGMHHLFIVVRDGGKPTPLYSTVWVNLLVNESVEPCHLDRAPT
WTGTQQLAQTPPRAPMCEMESPTSAQLTLLAGVGLMLTSTCLLLVTVALYLKQRRGRARQ
KTSGQFDENNIPLRHKDKYYSDE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatgggactcctgataatatgaactgggctggactgctgcagaatctgctgctt
ctggtccatctcaggcagatcatgtgcgcttctgtccggttttccgtcctggaggaacag
gagcctggcactctcgtcgggtcacttgctgaacacttcccccctccgtaccagctcctg
acccaggactacctgtggatggacagaaaaactgggaatttctacaccaccgagaaaaag
atggatcgtgaggccctgtgtcccgaggagacaaaagcagaggaatgcattattctactc
tatgccattgtaagaacctcaggggaccttatacagtttcctgtgatcatagaagacatc
aatgacaacacgcctcgctttgaaaacagtgacatacacctgaggatttctgaagacgtg
actgtagggaccagtttcttattggacgaccaggctcaggacagggacgccggtctaaat
ggagacctacagtaccaccttgaatattctgatgttgatgataatggggttttcggttta
aaagtcgaagaggacgggcttttcctcatgctggttgtgcaaacagctctggatagagag
actaaggaccagtatcagatggtgctggttgccactgaccgcggcgtgggccctttaagt
gttacagcaactttaacagtcacggtgacagatgttaacgacaactgtccgcgctttagc
agtgacagcccgagcagtgtcaccatccccggagactccccgaagaacatgctggtggct
caggtcagagccgcagacccagatttaggcccgaacgctgccatcgcttattccctcagt
cccaaagtctccgagcgggccaagaagctctttagcctcgacagcctcactgggtacatc
acactaacacaggacctctggagtgacaactccgaggagctggtgttaaaagtgttagct
agcggccatcactgccccccagcagacactcaggtaaccgtgtgtgtgctccccaaggcg
acccaggagctgacgatcaagatcgggttcatagtggagcatgaaaaccagactatggtg
ttaccggagaaccagccccccaccgtcttagctgttctagagctcgagggtgacagcagc
tttaaaggctcgtctcttgccattgagggcgaagtgcctttcactttgagcccgcagaat
ggcaaatatctgctttccacatcaaagcccctagactatgagttgaaaagtgaacatcag
atttctgtgatcgtccacaggagatcaggtgaagtgtctgccgtcactccctcgaggcac
gtgctgaggctaaaggtggcagacgtcaatgacaatcctccacatttcccccagtctcat
taccagctggaggtggtggaaaacaaccagccaggaataccactgctgcaggtctcagct
tcagatgcagacagcggacacaacggcagggtgacctacacgctggacaaacacacatct
accatctttaacattgaccctgtgacaggtcaactgtctgtgtcggcctctcttgacagg
gagcagcagggtgcacacaacctcactgtgtttgcacgagatagcggctctcctcccttg
gagtccgtgaccacggtgtccatccgcgttctcgaccagaatgacaatgcacctgttttc
caaaccccgcacttcatctttttcgtccccgagaatgtgccgccgttcacccaggtggga
cgggtcggggtgacggacccggatgaaggggagaacgggaacacagagttgcatgttgta
aacagcagtggaacctttgttgtggatcacgcccaggggacgcttcgcaccaacacaaac
ttggaccgcgagacagagggccactacgaactctacttgctggccagcgatcacgggcac
ccggtcgctttgacgtccagtgccagggtgactatctttgtgcaggacatcaatgacaac
cagcccaaagtaatccttcccagcagtaactcctcatgcctgactgtctcgccctctgct
gtggcaggcagcatggtaacaaagatccatgccatcgatgaggactctgggctgaattca
gagattacgtacaccgctgtggcgccagagaccgtgcagaacagcagcccgttccaggtg
gactcaaggtcagggaacattaccttagctcagcagcttctacagaaggacctgggaatg
catcacctgttcattgtggtgagagacggggggaaaccaactcctctctacagcactgtc
tgggttaatctgctggtgaacgagagcgtggagccctgccacttggacagggcccccacc
tggacggggacacagcaactggctcaaacccccccaagggcccccatgtgtgaaatggag
tctcccacatctgctcagctcactttgttggcaggcgtgggtttaatgctgacatccaca
tgtttgcttttggtgacagtcgctttatacctgaaacagaggagaggaagagcgcggcag
aagacgagcgggcagtttgacgagaataacattccgctcaggcacaaagataaatattac
tccgatgaataa
DBGET
integrated database retrieval system
