Hippoglossus hippoglossus (Atlantic halibut): 117769021
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Entry
117769021 CDS
T07778
Name
(RefSeq) protocadherin alpha-C2-like isoform X1
KO
K16493
protocadherin alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
117769021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hhip03036
]
117769021
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117769021
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
117769021
Cell adhesion molecules [BR:
hhip04515
]
Cadherins
Protocadherins
117769021
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
117769021
NCBI-ProteinID:
XP_034453468
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All DBs
Position
10:complement(15674258..15818254)
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AA seq
1022 aa
AA seq
DB search
MAVTARCSYSAKENVPFSLYLFIFVVGGLTNAQIRYSIPEELENGAFVGDIVRDLGLDLS
KLSTRRLRITSDSGRRYFTINHKTGKLVVSDRIDRETVCEFSGTCSHNLEVVLENPLEVH
NVEVEILDANDNAPQFPRDEYQLEVSESALTGSRFHIEGAQDADDGSNSVKQYRLSPNDH
ITLDSIKPFSNNKHIELILKKPFDREQIPSHELTLTAVDGGTPQRTGTAKINVRILDAND
NVPAFDNSVYKVKLSENSPKGALVIKLNATDTDEGSNGEVFYSFSSYTPERVRQMFSMDT
DTGEIRVKNNIDYEETNSYEMYIQAMDKGPAPVAVHCKVVVEVLDVNDNIPEIVLSSLSS
PVREDARADTVVALISVNDRDSGTNKQVTLDIMPNLPFRIKSFRNHYTIVTSAFLDRETI
SSYNVTVNAVDGGIPPLSSQMTFKVHVADVNDNPPRFEQTSYTVYITENNAPGASLCVVK
ATDTDAAENARITYTVLNDNNHGIPVASYVSIKPDTGEAYAMRAFDFEKLREFHFQVKAQ
DNGMPPLSRVATVYVYVMDQNDHKPKIFYPPANGSRTTETLIKNAEAGVLVSKVTAWDGD
AGQNAWLLYSLEQTNTDIDLFKVHEHTGEIRTTRRVIEDNSTSFILKVSVHDNGLPPLSS
TATIHVYVMELPPKLAPDPKRIIRPNSPLMFSNVTLYLIIALSATTFVFLVTIFVLAIVR
CHAYCTQPGSCSPCCVSKKSVPEGSTSAGGGGSGGRTAGGGGGGQPINNVAQRRDLKGEP
HYIEVRGNGSLTKTYCYKTCLTATSGSDTFMFYNTGRPHSGTWGSGYVTSHSGQSQICVR
RLSMPDATAIKPKAPNADWRYSASLRAGGVMQSSVHMEESSVMQGAQGVLVQNWPTASSA
AARYLTLHCASAQLDDGLARQDAEGGEVSPPMGAGVDSNSWHFRYGPGGPGAPPQHLKPG
EVPPEAFIIPGSPAIISIRQNQGGEDDKSDFITFGKKEEAKKKKKKKKEKKDKKDKGKDD
DE
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgacggcgcgatgcagttacagtgcaaaggagaacgtgcccttttctttatat
ttgtttatattcgtagtcggtggcctcacaaacgcacagattcgatactccatcccggag
gagctggagaacggggcattcgtcggtgacatcgtccgggatttgggtctggacctgagc
aaactttccacccgacgcctaagaatcacgtcggacagcggacggagatatttcaccatc
aatcacaaaaccgggaagctggtggtgagtgaccgcattgaccgagagacggtgtgtgaa
ttcagcggcacctgttcacacaacctggaggtggtgttggagaatccgctcgaggtgcac
aacgtggaggtggagatcttggacgcgaacgacaacgcaccgcagttccctcgagatgag
tatcagcttgaggtgtcggagtccgctctcacggggtcgcggttccacatcgagggagct
caggacgcagatgatggctcaaactccgtgaagcaatacagactcagccccaacgaccac
atcactctggactccattaagcccttttccaataataagcacatcgagctcatcctgaaa
aaaccctttgaccgcgaacagattccctctcacgagctaaccctgacagcagtggatgga
ggcaccccacagcgaacaggcacggccaaaatcaacgtacgtatccttgatgcaaatgac
aacgtgcctgcctttgacaactccgtgtacaaagtaaagctgtctgaaaactctccaaag
ggcgcactggtgatcaagctgaatgcaacagacaccgatgaaggctccaatggggaagtt
ttttactccttcagcagttacacacctgagagagtcagacagatgttttccatggacaca
gacacaggagaaattcgagtgaagaacaatatagactatgaggagaccaactcatatgaa
atgtacatacaggcaatggacaaagggccagctccagtggcagtgcattgtaaagtagtt
gtagaagttttggatgtcaatgacaacattcctgagattgtgctgtcctctctctccagc
cctgtgcgtgaagacgcccgggctgacacggttgtggcattgatcagcgtgaatgaccgt
gactctggaacaaacaaacaagtaaccctggatatcatgcccaatttgccatttaggatc
aagtccttccggaatcactacaccatcgtcacatccgccttcttggacagggaaaccatc
tcttcctacaatgtcaccgtcaacgctgtggatggaggcatcccacccctgtcatctcag
atgacctttaaggtgcacgtggcagacgtgaatgataatccacctcgttttgaacagacc
tcatacactgtttatattacagagaacaacgctcccggtgcatctctatgtgttgttaag
gccacagacactgacgctgcagaaaatgcacgcatcacctatactgtcctcaatgacaac
aaccacggtatccctgtagccagctatgtcagcatcaaacccgatacaggcgaggcttat
gccatgcgagcctttgactttgagaagctgagagaatttcatttccaggtcaaagcccag
gacaacggaatgcctcccctcagccgtgtagccacggtgtatgtttatgttatggaccag
aatgaccataagcccaagatattctacccacccgccaatgggagccgcacaacagagacg
ctgattaaaaacgctgaagcaggagtgttggttagcaaggtgacagcgtgggatggtgat
gcagggcagaatgcttggctgctctattccctggagcagaccaacacagacattgacctt
ttcaaggtgcatgagcacacaggtgaaatccgcaccacaaggcgtgtgattgaggacaac
tccacttccttcatcctgaaggtgtcagtgcacgataacggcctaccaccactctcctcc
accgctaccatccatgtgtacgtgatggagctgcccccaaagttggcccctgaccccaaa
cgcatcatcaggcccaacagccccttaatgttttccaatgtcactctctacctcatcatt
gccctgagcgccacaaccttcgtgttcctggtcaccatctttgtcctagccatcgtgcgg
tgtcatgcctactgtacccagcctggctcctgctccccatgttgcgtttccaagaagagt
gttccagaggggagcacctcagcaggtggtggtggaagtggaggaagaactgcgggtgga
ggaggtggtgggcagccaataaacaatgtggcccagcgacgtgacctcaaaggggaacca
cattacattgaagtgcggggaaatgggtctttgaccaaaacatactgttacaagacatgc
ctgactgctacgtcaggaagtgacacttttatgttctacaacacaggacggcctcatagt
ggcacctggggctcgggctacgtcaccagccacagtggacaaagccagatatgtgtacgg
cgtctcagtatgccagacgcaactgccattaagcccaaggcgccaaatgccgactggaga
tattcagcctccctgagagcaggaggtgtaatgcagagctcagtgcacatggaggagtcc
tcggtaatgcaaggagcccagggggtcctggttcagaactggcccactgcttccagtgcc
gctgctcgttatctaacgctgcattgcgcttctgcccaactggacgatggtttggcgaga
caagatgctgaaggcggagaggtgtcccccccaatgggcgctggtgtagacagcaacagt
tggcactttcgctatggccccggcggtcccggtgcaccgccacaacacctgaagcctggc
gaggttcccccagaggcctttatcattcccggctccccggccataatatccatcagacag
aaccagggaggagaggacgacaagagcgacttcatcacctttgggaagaaggaggaggcc
aagaagaagaagaagaagaagaaggagaagaaagacaagaaggataaggggaaggatgat
gatgagtag
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