Hippoglossus hippoglossus (Atlantic halibut): 117769394
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Entry
117769394 CDS
T07778
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117769394 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117769394 (rbm22)
Spliceosome [BR:
hhip03041
]
Complex B
Other components
Prp19-related factors
117769394 (rbm22)
Complex C
117769394 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
Nup35_RRM_2
zf-CCCH_2
RRM_3
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_12
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
117769394
NCBI-ProteinID:
XP_034454161
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All DBs
Position
10:16652342..16657855
Genome browser
AA seq
427 aa
AA seq
DB search
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDEVPKSDVNKEYYTQN
MEREIANTDGTRPVGQLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPDDKSISTLYIGGLG
DTVTDGDLKSHFYQFGEIRTITIVQRQQCAFIQFATRQSAETAAEKSFNKLIINGRRLTV
KWGRSQAARGKEGIKEGVSEMGTRLDPVPGLPGALPPPPALDEETPANYFNLDPGTSPAV
MNIALPPPPGINPPPPGFGPPMFHPMAHMAPPMPPPMSMRPPGHIHYPSQDPQRMGAHAA
HGARHGE
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccctgggatccaacacctacaacagacagaactgggaagacgcggatttt
ccaattctgtgtcagacatgtttaggagaaaatccttacatccgtatgactaaggagaag
tatgggaaagaatgcaagatctgtgctcgacccttcactgtgttccgatggtgtccaggg
acacggatgcgtttcaagaagacggaggtctgtcagacctgcagcaaaatgaagaatgtt
tgtcagacatgtctgctagacctggaatatggactgcctatccaggtccgagacactgga
ctttctgttaaggatgaggttcctaagtcagatgtgaacaaagagtactacactcagaac
atggagagagagatagcaaataccgatggcacacggccggtgggtcagctaggtaaggct
cccagctccagtgatatgttgctgaaactggcccgtacgacgccatattacaagaggaac
cgaccgcacatctgctccttctgggtgaagggagagtgtaagagaggggaggagtgtccc
tacaggcatgagaagcccacggatcccgacgaccctctggctgaccagaacataaaagac
cgttactacggtatcaatgaccctgttgcagacaagctgctgaaaagggcctcaaccatg
ccacgactagacccaccagatgacaagtcaatctccactctctacattggaggtttggga
gatactgtcacggatggggacctcaagagccacttttaccagtttggtgagattcgtacc
attaccatcgtccagcggcagcagtgtgccttcatccagtttgccacacggcagtctgct
gaaacggctgcagagaagtccttcaacaaactgatcattaatggacgaaggctcactgtc
aaatggggaaggtctcaggcagcaagaggaaaggagggtatcaaagagggtgtcagcgag
atgggtaccagacttgatcctgtacctggcctgcctggagctcttcctccaccaccagct
ttggatgaagagactcctgcaaattacttcaacctggacccgggcacttctcctgctgtc
atgaacatagctctgcccccaccaccaggaatcaacccacctcccccaggttttgggcct
ccaatgttccaccccatggctcacatggctccacctatgccccctccaatgagcatgaga
cctcctggtcatattcactacccctcccaggatcctcagcgcatgggtgcccatgcagca
catggcgcacgccatggagagtag
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