Hippoglossus hippoglossus (Atlantic halibut): 117770240
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Entry
117770240 CDS
T07778
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117770240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117770240
03036 Chromosome and associated proteins [BR:
hhip03036
]
117770240
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117770240
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117770240
mRNA degradation factors
5'-3' decay
Decapping complex
117770240
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117770240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
117770240
NCBI-ProteinID:
XP_034455309
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All DBs
Position
11:3809194..3819309
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AA seq
489 aa
AA seq
DB search
MATARTENLGTVVMGLNKQNGQLRGQTKPASVQPAPTTLGKAMGALQKAGCPPQEGGGIK
FGDDWKKSLKLPPRDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAMVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTKRVELLAKKITLLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRIGRSGR
FGHLGLAINLITSEDRINLKATEEQLVTDIKPIPSSIDKSLYVAEYHSSSGDCDVEEIEE
KSGHPDDGI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaaccttggcacagtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccagccagcacctacaactctagga
aaggctatgggcgcactccagaaagcaggctgccccccgcaagagggaggaggcatcaag
ttcggagacgactggaaaaagagcctgaagctccctcccagagacaccagggtcaaaacc
tccgatgtgacatccaccaaggggaatgaatttgaagattactgtctcaaacgagaactc
ctgatgggcatctttgagatgggttgggagaaaccatcccccattcaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggctaaaaatggaacagggaaaagt
ggagcctatctcatccccatgctggagaggatagacctgaaaaaggactacatacaggct
atggtcatggtgcccactcgcgagctggccctgcaggtgagtcagatctccatccagatc
agcaaacacctaggaggagtcaaggtcatggccaccaccgggggcaccaacctgcgagat
gacataatgcgcttggacgaaatcgtgcatgtggtcatcgccacccccggcaggatcctg
gacttgataaagaagggagtggcgaaggtggatcgggtccagatgatggtgatggacgag
gcggataagctgctgtctcaggactttgtggtgctcattgaggatatcatcagcttcctg
gccaagaaccggcagatcctgctctactctgcaaccttccccatcagtgtgcaaaagttc
atggccaagcaccttcagaaaccctatgagataaacttgatggaggagctgactctgaag
ggcattactcagttctacgcctacgtcacagagaggcagaaagtgcactgcctcaacaca
ctgttttccaggcttcagatcaaccaatcgatcatcttctgtaactctaccaagcgagtg
gagctgttggccaagaagatcactctgctgggctactcctgcttctacatccacgctaag
atgatgcaggaatacaggaaccgggtgttccatgacttcagaaacggactgtgcagaaac
cttgtctgcaccgatctcttcaccagaggtatcgacatccaggctgtcaacgtcgtcatc
aacttcgactttcctaagagcgctgagacttacctccatcgtatcggaagatcagggagg
tttggtcacctggggttggccattaatctcatcacgtccgaggatcgcataaacctgaag
gccactgaagagcagctggtgaccgatatcaagcccattcccagcagcatcgacaagagc
ctctatgtggccgagtaccactcatccagcggcgactgtgacgtggaggaaatcgaagag
aaatcaggacatccagatgacggcatctaa
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