Hippoglossus hippoglossus (Atlantic halibut): 117770351
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Entry
117770351 CDS
T07778
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117770351 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117770351 (parn)
Enzymes [BR:
hhip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117770351 (parn)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117770351 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
117770351
NCBI-ProteinID:
XP_034455606
LinkDB
All DBs
Position
1:complement(23810797..23827743)
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AA seq
682 aa
AA seq
DB search
MELTRRNYKGCLKTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEGRYAKLKKH
SMDFLLFQFGLCAFKYDQAKSKYIIKPFNFYVFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCDGIPYLNQEEEAQLREQTEERRNQQANGLGTPSFISPSSKGPAHVPDEHKDF
INRVIEKVEALFTNSEKTVNLQPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERFIQI
CRVDDEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRLMDTKLMASTQPFKDLITNTSLAELEKQLKMTPFKSPQVE
TAEGYPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKPFISPRSKLIEPFHNK
LFLMRIIDIPYLNITGPDLQPKRDHVLHVSFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQLKEKDKVRHSTKSWGEDGWVKHHYTSS
ATSGFGYSRGLRKRSISPVQGEQGIGELVITDGWSHYSYPDSMGSKKMKTDDANTDAVES
KTSEGWLKTTDASDLAGLSLLPDEDEQQDEEGSPEGTDPVSDAEGTVTWQQAPAANARKG
QKKKKAEAAESSTSLFDVPDVW
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggagctgacacgcagaaattacaagggctgcctgaagacggtgtacagcgccatagag
gaggcggactttctggccatcgatggggagttttcagggataagcgacggtcccaatgtc
agtgcgctgaccaacggactggacaccccggagggccggtacgccaagctcaaaaagcac
tccatggactttctgctgttccagtttggattatgcgcattcaagtacgaccaggcaaag
tcaaagtatatcataaagccttttaatttctatgtattcccgaaaccattcaacaggacg
tcccctgacataaagttcatctgtcaaagttccagcatcgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtgatggaatcccatacctgaaccaagaggaggaggcc
cagctgagggagcagacagaggagaggaggaaccagcaagctaacggcctcgggaccccg
tccttcatctccccatcgtccaaaggccccgcacacgtacccgatgaacataaagacttt
atcaacagggtgatagagaaagttgaggccctcttcactaactcggagaagactgttaac
ttgcagccatgcaccgggtttcagagaaagctgatctaccagaccctgaactggaagttt
cccaaggggcttcatgtggaaaccgtggaaacggaaaagaaggagcgattcatccagatc
tgcagagtagatgacgaggagaggaagaggagggagcagcagaaactggagagggagcag
gaggagctaaatgatgctgttggattctccagggtcatccacgccatctctaaatctggt
aaactcgtggtcggccacaacatgctcttggatgtgatgcacaccatccaccagttctac
tgccctcttccggaggatcttcaagactttaaagaggtcacaatgtgtgtcttcccaaga
ctaatggacacaaagctgatggcttctactcagccttttaaggacctgatcactaacacc
tctctggcagagctggagaagcagctgaagatgacccccttcaagtcaccgcaagttgaa
accgcagaggggtaccccagttacgacacagcccaggagcagctccacgaggcggggtac
gacgcctacatcactgggctctgtttcatctccatggccaactacctgggctctttcttg
actccacccaaacctttcatctcacctcgatccaaactcattgagccattccacaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttgcag
cccaaaagagaccatgtcctccatgtctcattcccaaaagaatggaagaccagtgacctc
taccagctctttagtgcctttgggaatatccaggtttcatggattgatgacacatcagcg
tttgtgtccctgagtcaaacggaccaggtacagatagctatgaacaccagtcgctatgca
gagagctacaggatccagacgtacgccgagtacatccagttaaaggagaaggacaaggtc
aggcacagcaccaaatcctggggcgaggacggctgggtcaaacatcactatacctcatcc
gctaccagtggttttggatattccaggggtttgaggaaacgcagcatcagtccagttcaa
ggagagcaggggatcggagaacttgttattacagacggctggagtcactactcatacccg
gatagcatgggcagcaagaagatgaaaactgatgatgcaaatactgacgctgttgagagc
aagacatcagagggctggctgaagacgacagatgcatcagatctagcagggttgagtctc
ctccctgacgaggacgagcagcaggacgaggagggaagtcctgagggcacagatccagtc
agtgatgctgaggggacggtcacctggcaacaagccccggcggctaatgcgaggaaaggt
caaaagaaaaagaaggctgaagcggctgagtcttccacttcgctgtttgacgtcccagat
gtctggtag
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