Hippoglossus hippoglossus (Atlantic halibut): 117770960
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Entry
117770960 CDS
T07778
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hhip04990
]
117770960
Domain-containing proteins not elsewhere classified [BR:
hhip04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
117770960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
117770960
NCBI-ProteinID:
XP_034456812
LinkDB
All DBs
Position
1:complement(22323933..22361129)
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AA seq
1775 aa
AA seq
DB search
MATPPAAAAAAADVPTPSPATRDEPEEPNIPEPEPACQEAQKWIEAVTGKSFGDKVFRSA
LENGILLCELLSAIRPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLRGSQLFDPGDLQD
TSMRANLKDSDCNRKLKNVLNTVFWLGKAASGCASYSGPTLNLKEFEGLLSQMKMETEEG
GDSPQKRSVRDSGYDCWDSERSDSLSPPRHTRDNSLDSLDSFGSRSQHSPSPDVVNRGNT
DGRGSDSEADGSGRRPDVRKDDMLARRTASGESRSSIPFNQFLPNRTNASSYIPAPRRKP
HTEDGEQRSHLQATPEQSSKRTGLHLKTAKTVTWAVENNGEKLKQEEEKVAQEVLEQRRL
QKLEKMGIKVLPAAVRYSSTVEEEEVRSPSPSIILRRDNDFLTSQKSAWDSSSDAEEEAE
AQKVPDVRKDDLASRRAHRGAVAPRVHQFVPAVCSNKDRERWEGIRRASQQTLQEREISE
KEALPDIITRKDNPFLNSAPRREEEEDEEEEGRVKAMPNKQKDDLARRRAQSRTLPQRDG
PMSFVSASMSQADMKKWEKLKMTEPSEASAAPVCQACLEKSYGTPLSGSAKAGRGHSKVV
TFGGVTEIEQPIDTVTSNEGEETELLRRLLSKATVAMPTIGLGSQLSERERSQVDGADLS
QTTPPSAGLPPWTPECAATPAELDARLAQYERRAQEEEEEEDEEEQERIPDLQKDDMMAR
RAGAFHKQSTATATYNRFLPLPSSKRCTAGEDTPDAAPRNKKEVQMERNKKLGVRVEQQQ
QQQQQQQQQPRVHMETPQPQPDAMAVRLTPHNEREYDEDEDEDEYDENEPLPDLEKDDMM
ARRTGSYQKPTAPRTNQFRNQFLPVPGSVKYSVSPVSAMKPLHSRPKHAEKMTSESRSVI
VAAEPQAPPPAPPTGPRCTTLMERQEKEEAGKQEGDMRVPNTSVAGLTEPLSSPSLTPPP
SPAAAAAALICKVEAVLETKTERRVEERKRDVNEPPRKKPLWLEDDDLPPIMVSRRVAFM
SEDTESVSLGDMLNEEEVGYLPPLSQSRHERMQEQYSFQEEEDHWHNDLARWKTRRRSTS
QELIKKEEERKRMEKSMKEHGGDGNKRKSIKTYNQILEEKERRELELCEAYRNAATPEEA
AVVLQRYALRFTISDATLDSLKLPRSTSKPTSDATRVDEEDKTSSAVEDSETSEPLRKPE
PAVVTEQREMKPEEIEKDTTPQQETSVSVPTSSPTPTSPPTTVTNSENKPPQLIELNKPQ
SKPTESPTAHQTQQITGDAKPQTKHTPPRITQAQPHTKQPAHTIPSPPSVPSRPLPLLVA
KPYCQPRSTPSGHKPVKMDVLVRVNGEATEDLSAPATPASPQHSPQEIEDVSSKQTEKDF
PAEETLVKNQETTEQPPPPPPPQTEKSTASSGSAISSLIGGRNCIITTTIVTELTQTLVE
PLNPEQSNGQVIKQVNGTTGLVASPVKEKKEPPASSASSMQEYSPTVTEGLEESSVTIET
PMLNLAKRVNHWVWDPNEERNRLEMWQQEQERLLQEQYHKEQEKLKKEWEKAQIEVEEEE
RKHNEEERRILEETVTPLNPSGSLKQQLVKTETTPSAPPNNETENGDVPPQQNGQRVSAG
NEDQHASKLHFFQDPVCDGEPSKKQELWKTASLDRNLQLNQTQAVKRSGSHDVVTGKQQQ
ASSSSSSLPPQPPSPSRCVSGKRLCCGCSQPLGKGAAMIIDTLGLFFHIQCFKCGVCDGQ
LGDASAGTDVRIRNGQLSCYECYMATRGRGQPTTL
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccccccgcagcagcagcagcagcagcagacgtcccgacaccgagccctgcg
acgcgggacgagccggaggagccgaacattcccgaaccggagcccgcgtgtcaagaggcg
cagaaatggatcgaggctgttacagggaagagctttggagacaaggtcttccgcagcgcg
ctggagaacggcatcctgttatgcgagctgctgagtgcaatcagaccagggctggtcaag
aagatcaacagactgcccacccccatcgccggcctggacaacctgtcagtcttcctgcgg
ggctgtgaggagctgggcctgaggggctcccagctgtttgaccccggggacttgcaggac
acgtccatgcgggcgaacctcaaggactccgactgtaaccgcaaactaaaaaatgtgctg
aacacagtgttctggctggggaaggctgccagcggctgtgcctcctacagtgggcctact
ctcaacctcaaggagtttgaagggcttctttcccaaatgaagatggagactgaggaagga
ggcgacagtccacagaagcgcagtgttagagacagcggctacgactgctgggactctgag
aggagcgattctctctctccaccacgacacacccgcgacaactccctcgacagcctggac
tcctttggctcccgctcccagcacagtccttcccctgatgtggtgaatcgaggcaacact
gatgggcgaggcagcgattcagaggccgacggctccggcaggaggccagatgtgcggaag
gatgacatgttggccaggcggactgccagcggggagtcaaggagctccatccctttcaac
cagtttcttcccaaccgaaccaatgccagctcctacatcccagctccgcggcgaaaacca
cacacagaggacggagagcagcggagtcacttgcaagccactccggagcagtccagcaaa
agaactggactgcacctcaaaactgccaagaccgtcacttgggccgtcgagaacaatggg
gagaaactaaaacaggaagaggagaaggtggcgcaggaggtgctggagcagaggaggctg
cagaagttggagaagatggggatcaaagttctgccggctgctgttcgctacagcagcacg
gtggaggaagaggaagtgaggtcaccatccccgagcatcatccttcgccgggataacgac
tttttgacctctcagaaatctgcctgggattcctcctcggatgcggaggaggaggcagag
gcgcagaaagttccagatgttcggaaagatgacctggcgtccagacgagctcatcgcggc
gccgttgctcccagggtgcaccagtttgtcccggcagtatgtagcaacaaagatcgggag
cgctgggaggggattcgacgggcctcccagcaaacactgcaggagagagagatcagtgag
aaggaagcgcttcctgacatcattacacgcaaagacaaccccttcctaaactctgcccct
cgccgcgaggaagaggaggatgaggaggaagaggggagggttaaagcgatgcctaacaag
cagaaggacgacctggctcgtaggcgggctcagagtcggaccctccctcagagggatgga
ccaatgagctttgtttctgcctctatgagccaggcagacatgaagaagtgggagaaactc
aagatgactgaacccagtgaggctagcgcggcacctgtgtgtcaggcttgtctggagaaa
agttatgggactcctctcagcggatcagcaaaggctggacgaggtcacagcaaagttgtg
acctttgggggcgtgactgagatcgagcagccaatagacacagtcacatcaaatgaaggg
gaggagacggagttgctaagacgactcctttccaaggcaactgtagccatgcctaccatt
ggcctgggctcccagctttcagagcgggaacgcagccaggttgatggagccgacctcagt
caaaccacacctccttctgccggtctcccaccctggacccctgagtgtgccgctactccc
gctgagctggacgctcgtctggctcagtacgaaaggagagcacaggaggaggaggaggag
gaggatgaggaggagcaggagaggatcccagatctccagaaagacgacatgatggcaagg
agggcaggagctttccataaacaaagcacggccacagcgacttacaaccgcttcctgcct
ctgcccagctccaagcgctgcacagcgggggaggacactcccgatgctgctccgcgtaac
aagaaggaagtgcagatggagagaaacaagaaactgggcgtcagagtggagcaacaacaa
caacaacaacaacaacaacaacaacaaccaagagttcacatggaaacacctcaaccacag
cctgacgcgatggcggtgcgattgacacctcacaacgaacgggaatacgatgaggatgag
gatgaggatgagtatgatgaaaacgagcccttgcccgacctggagaaggacgacatgatg
gctcggaggacgggatcttaccaaaagccaactgcacccaggactaatcagttccgtaac
cagttcctgcccgtacctggatcagtcaaatatagcgtcagccctgtgtcggcaatgaag
ccgctacacagcagacccaagcacgctgagaagatgactagtgaaagccgcagcgttatc
gtagcagcagaacctcaggcaccaccccctgcccccccaaccggccccaggtgtacaacg
ctgatggagcggcaggagaaggaggaggctggaaagcaagagggagacatgagagtcccc
aacacctctgtcgcaggtttgactgagcccctctcttctccatcactcacccctccaccc
agtcctgccgctgctgctgctgcactgatctgtaaagtggaggccgtgttggagacaaaa
actgagagaagggtggaagagagaaaaagggatgtgaatgagccaccgcgaaagaagccg
ctctggctggaggacgatgatctacctcccatcatggtgagccggcgagttgcttttatg
tctgaggacacagagagtgtgagtttgggtgacatgctcaacgaggaggaggtgggatat
ttaccaccgctgagccaatcccgacacgagcgcatgcaggaacagtacagctttcaggag
gaggaggaccactggcataatgacctggctcgctggaagactcgccgtcgcagcacgtca
caggagctgatcaagaaagaggaagagaggaagaggatggagaagagcatgaaggagcac
ggaggtgacggcaacaagaggaaaagcataaagacgtacaatcagatcttggaggagaag
gagcgcagagagttagagttgtgtgaggcctataggaacgcagcgactccagaggaggca
gccgtggttttacagcgctacgctctccgcttcaccatcagcgacgcaacactggacagc
ctgaaactgcccagatccacctcgaaacccacatcagacgccactcgggtggacgaagag
gacaaaacctcctcagctgttgaagactctgaaacgtcagaacctctgcgcaaaccagaa
cctgctgttgtgacagaacagagggaaatgaaacctgaagagatagagaaagatacaact
cctcaacaagagacgtcagtgtctgtccccaccagttccccgacacccaccagtcccccc
accactgtcacaaattcagaaaataaaccaccgcagttgatagaactgaacaaacctcag
tccaaaccaacagagtctcccaccgcacatcagacacagcagattacaggagatgcgaag
cctcagaccaagcacacgccgcctcgaatcactcaagcgcagcctcacaccaaacagccg
gcccacacaatcccctcccctccatctgttccctccaggcctctgcccctcctggttgcc
aagccctactgccagcccaggagcacgccgtctggacacaaaccggtcaagatggatgtg
ttggtgcgtgtgaatggagaggcgacagaggatttatccgctcctgccacgcccgcctcc
cctcagcactcgccacaggagattgaagacgtcagctccaaacagacagagaaagatttt
cccgctgaggagacgctggtgaaaaaccaggagacaacagaacagccaccaccaccaccg
cctccacagacagagaagtccaccgcatcttcaggctcggccatcagctctctgattgga
ggccgaaactgcatcatcacaacaacgatcgtcacggagctgacgcagacgctggtggag
ccgctcaacccagagcaaagtaatggacaggtaataaaacaggtcaatggaactactggt
ttggttgcatcaccggtgaaggaaaaaaaggaaccgccagcttcatcagccagcagcatg
caagaatattctcccaccgtcacagagggactggaggagagcagtgtcactattgagacc
cccatgttgaacttggctaaacgtgttaatcactgggtctgggaccccaatgaggagcgt
aatcgcctggaaatgtggcaacaggagcaggagcgcctcctacaggagcaataccacaaa
gaacaggagaagctgaagaaggagtgggaaaaagcccagatagaggtggaggaggaggag
cgaaaacacaatgaggaggagagacggattctggaggagactgtaacgcccctcaatccc
agcggctcgttgaagcagcagctcgtcaagacagagacgactccatcagcgccgccaaac
aacgagacggagaacggcgatgttcctccgcagcagaacggccaaagagtctccgcgggg
aacgaggatcagcacgcgtcaaagctgcattttttccaggatcctgtgtgtgatggtgaa
ccctcaaagaaacaggagctgtggaagacggcgtctttagaccgcaacctccagctaaac
cagacacaggctgttaaaaggtctggatcacatgacgttgtaacaggcaaacagcagcag
gcttcctcctcttcatcatcattaccaccacagccaccttcccccagcaggtgtgtaagt
gggaagagactttgctgtggttgttctcagcctctgggaaaaggagctgccatgatcatc
gatacactgggactgtttttccacatacagtgttttaagtgtggagtgtgtgatgggcag
ctgggcgacgcctctgcagggactgacgtgaggattcgaaatggccagctgagctgctac
gagtgctacatggcaactcgtggcagaggacagcccactacactatga
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integrated database retrieval system
