Hippoglossus hippoglossus (Atlantic halibut): 117771192
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Entry
117771192 CDS
T07778
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hhip03009
]
117771192 (pdcd11)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
90S particles
Other 90S particles
117771192 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
Suf
OB_RRP5_4th
TPR_19
HAT_Syf1_CNRKL1_C
UTP6_C
TPR_16
TPR_CcmH_CycH
ARM_TT21
RA_2
TPR_15
ARM_TT21_5th
Ig_NUP210_15th
Wzy_C_2
ANAPC3
NRDE-2
Motif
Other DBs
NCBI-GeneID:
117771192
NCBI-ProteinID:
XP_034457165
LinkDB
All DBs
Position
1:complement(8285403..8303117)
Genome browser
AA seq
1813 aa
AA seq
DB search
MASAEEDFPRGGTAKKSTDGKPVVHRGEVDNLFQSNEQAEAKTKRKGALKDDAKKLKKQK
TGKEKSDGLALNAAAKCVEILHLKNLKEGMLMLGCVKDVADFEVTVSLPCGLQGFLNIRN
ISDSYTKLLSEQLDSADTEDIFSLPHLFSPGMVIRCVVAKLDVAKGGSLSIQLSVNPKLV
NKALTSSSVKAGMILSGCVESVEDHGCIIDIGISGSKAFLSKAADKQNNLDELKVGQFLT
CKVEEVKNEGRVVRLSVNPLTVAQACAKDEQGWNLTNLLPGLLVKATIKKVTKHGLILDF
LSSFSGQVDFLHMEPEQASNYTEGTELYACVLYVEQSTRLVGLSLRIYLVQPEQRLNPTP
SCGDRIGEVVKDCKMTTVHHMSGAMLELPDKMLAFVHRNHMKEMHKATNENRVLAKPEHT
CRILDFSPMEQIHFASLRWSVIERPFYRYHDLQAGQIVEGKVSVLLSHGMVVHLSDHIKG
LVPRTHLSDILLKNPEKKYVEGMKVKCRVLSVDPATKKLYLTRKKALVETTLPLFLTFND
ARPGSISQGYIVCIKSFGCIIRFYNNVKGLVPISELSSEPIISPEEVFYIGQVLKAKVLK
CDPGKEKMVLSFKGAVEGGTEEAAKLQDDCEVGKQLEAKVLKKLVNGLEVSILPDDIRAI
LPTMHLSDHLSNCPLLWESLQEGDDISNLVCFSNNKQISLTKKPTVRWALEEGLVAKDFS
EITVGMQLIGWVKNIMSYGVFVEFPYGLVGLAPKSAMTDKFVSDTAAAFQLGQTVIAKVT
NLDEEKRRFLVTLKISEVIPRDGDAQTRLINGLQERRALNEVLAMKDNCDLRQQLTALCV
GQTLKLTVDTVNDDGAIFKSHDLVSATVLANKYHVTGVSLTEGQKVTAVILHVDILSASV
HVSILPKLVEKKKSLIEGSKHRATVQYIDKDFAVVSLDNTAKLTVIQTRSHMNEVLLSAS
EMLKAGMSLAVEVTEPSCQELQGLPLVSWQRAAPKRQRTTSDNQQDSKGHCFGETLEGKV
RTVKPVSIQVTLEDGSTGSVHVSEVMEVAEVCQGSFPTSSVKVGSVVTARVIGGREAVSN
RFLPFSHPKFTYTIPELTLIPSKVDKSSDFKPVGAKEKLSSYTVGEEITCFVSKFNPKRK
LLEVTTDPRITGTVELLAMITDPKDASHPEKLYKLGQAIRATVVETNSKPHRFGLSLTGV
HKLEEGSVALGMVTHIQPQGLMVKLPFGGKGYVAVTELADAYRSNPLDVYSTDQLLRCFL
IACENDKWQLSLRPSRLNPQQAKLVKDPEVLSIDQLKEGQIIRGYVKSVGEQGVFIRLSQ
NITGRAQLQQSTKYFVSNHKVLSEHLPPNTLLTTKIFSIDREEGFVNLSLLPVDTGKPDI
LPESLRLPLRLIGEEKKKYDAAKKKRTLSESEQKQAESQVPKKKKKTKKAKGDDNDSGVE
VYFREEEDQEGEQEPKPDAAKPVTSSSAVPSRLQVAAGFSWDVGLNSLKPASAAQDGDSS
DGEDQDGSSKPQKKSRHELDQEKKATEKALVKREVELMDPNLRPEDAAAFERLLLASPNS
SLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTQETLK
KVFERALQFCEPMPVYQQLADIYAKSDKTKDAEGLYKTMVKRFRQNKAVWLSFGSFLLQQ
GQSDAAAALLQRALKSLPSKESVDVIAKFAQLEFRFGDVEKGRTMLDKVLTSYPKRTDLW
SVFIDLMIKHGSQKEVRVLFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQAVKEKA
MEFVEAKGTEAAN
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcagaggaggacttccctcgaggagggacagcgaagaagagcactgatggt
aaaccagtggttcatcggggtgaagtggacaatctcttccagtcaaacgaacaggccgaa
gcgaaaacgaaaagaaagggagcgctcaaagatgatgccaagaaactcaagaagcagaag
acgggcaaagagaagagtgatggtcttgcgctcaacgcagcagccaagtgtgtggaaatc
ctgcatctgaagaatctgaaggagggcatgctgatgctgggctgtgtgaaggatgtcgca
gactttgaggtgacggtcagtctgccttgtggtctgcaaggtttcctcaacatcaggaac
atcagcgactcgtacaccaagctgctcagtgagcagctggattcagctgacacagaggac
atcttctctctgcctcacctcttctcccccggcatggtgataagatgtgtggttgcaaag
ctggacgtagcgaagggaggctctctgagcatccagctgtcagtcaatccaaagctggtg
aacaaggctctcacctcgagctcagtgaaagctggcatgatcttgagtggatgtgtggag
agtgtggaggatcatggctgcataattgacatcggcatcagtgggtccaaagccttcctg
tccaaggcagcagacaaacaaaacaatctggacgagctgaaagtaggtcagtttttgact
tgtaaagtggaagaagtaaagaacgaaggacgtgtggtgcggctctctgtcaaccccctg
actgtcgcccaggcctgtgctaaggacgagcagggctggaacctcaccaacctgctgcct
ggtctgctggtcaaagccacaatcaaaaaggtgacaaaacacggtctgatcctggacttc
ctgtcctccttcagtggccaggtggactttctgcacatggagccagaacaggcatcaaac
tacacagagggaaccgagctatatgcgtgtgtgctttacgtggagcagtccacgcgcctc
gtgggtttgagtctgcgcatctacctcgttcagcccgagcaaagattgaaccccactcct
tcctgtggcgaccgcattggtgaggtggtgaaggactgtaagatgaccactgttcaccac
atgtctggagccatgttggaactgcctgataaaatgttggcatttgtgcacaggaaccac
atgaaggagatgcataaggcaaccaatgagaacagagtgctggcaaagcctgagcacact
tgcaggatcctggacttcagccccatggaacaaattcattttgccagtctgcgctggagt
gtgattgagaggcctttttatagatatcatgatcttcaggctggtcaaattgtggagggg
aaagtgtcagtcctgctgagtcatgggatggtggtgcatctgtccgaccatattaaaggt
ctggtgcctcggacccacctgtctgacatcctcctgaagaacccggagaagaagtacgtc
gagggcatgaaggtcaaatgtcgggtgctgtcagtggatccagcgactaagaagctgtac
ctgaccagaaagaaggccctggtggaaaccaccctgccgttgttcctcacctttaacgat
gctcgtcccggcagcatttcccagggctacatcgtctgcatcaaaagcttcggttgcatc
attcgtttttacaacaacgtcaagggtctggtgccgatcagtgaactgagctctgagccc
atcatcagtcctgaggaggtcttctacattgggcaggtgttaaaggctaaagttctcaaa
tgcgaccctgggaaggaaaagatggtgctgtcctttaaaggtgcagtagagggaggcact
gaggaagctgccaaactccaggacgactgtgaggtggggaagcagctggaagccaaggtg
ctgaagaagttagtcaacggtctggaggtttccatcctgcctgatgacatacgagccata
ctacccaccatgcacctctctgatcacctgtccaactgccctctgctgtgggagagcctg
caggagggagacgacatctcaaacctcgtctgcttcagcaacaacaagcaaatttcgctc
accaagaaaccgactgtgaggtgggcattggaggagggactggttgctaaggatttctct
gagatcacagttggaatgcagctcattggctgggtcaagaacatcatgtcctatggcgtc
tttgtggagttcccatacggccttgtgggtctggcacccaagtcggccatgactgacaag
ttcgtcagcgacacagcagccgccttccagctgggccagaccgtcatcgccaaggtgacc
aacctggatgaggaaaagcggcgtttcctggtcacgctgaagatttctgaggtcattcct
cgagacggggacgcccagaccagacttattaacggtctgcaggagagaagagctttgaat
gaagtgttggctatgaaagataactgtgatctccgccagcagctgactgctctgtgtgtt
ggtcagacgctgaagttgactgtggacactgtgaatgacgacggagcaatatttaagtct
catgacttggtcagtgccaccgtactggccaacaagtaccatgtcacgggtgttagcttg
accgaaggacagaaagttactgccgtcatccttcatgtggacatcctgtctgcctctgtc
catgtgtccatccttcccaagctggtggaaaagaagaaatctttgattgaaggatcaaaa
cacagagcgacggtgcagtacatagacaaagactttgccgtggtctcattggacaataca
gcaaagctgactgtgatccaaaccaggagccacatgaatgaggtcctcctctctgcgtca
gagatgctgaaggcaggaatgagtttggccgttgaggtgacagaaccgagctgtcaggaa
ctacaagggctccccctagtgtcgtggcaacgcgctgcccctaaacgacagcgcacgacc
tccgataaccagcaggactccaagggtcactgctttggcgaaaccttggaggggaaagtg
cggacggtgaagcctgtcagcattcaggtcacactggaggatggaagcaccggcagcgtg
cacgtgtctgaggtgatggaggtggccgaagtgtgtcagggatctttcccgacgtcctct
gtgaaagtgggcagcgtggtcaccgccagggtcatcgggggacgagaagccgtcagtaac
agattcttgccgttttctcatcccaaatttacatacaccattcctgagctcactctaata
cccagtaaagtagataaaagttcagatttcaaaccagttggcgcaaaagaaaaacttagc
agctacacagtcggggaagaaattacatgctttgtatcaaagtttaatccaaagaggaag
ttgttggaggtcaccactgatccacgtattactggcacagtagaacttctggccatgatc
actgatcctaaagatgccagtcacccagagaagctgtacaagctggggcaagcaattcgt
gctacagtggttgaaacgaactccaaacctcatcgctttgggctctcactcacaggagtc
cataagctggaggaaggcagcgttgctttggggatggtgactcatattcagccacaaggc
ctcatggtcaagcttccctttggtggcaaggggtatgtcgctgtcactgagctggctgat
gcctacaggtcgaacccactggatgtatacagcacggatcagctcctcaggtgtttcctc
attgcgtgtgaaaatgacaagtggcagttgtctctacgtccatcaaggctgaatccacag
caggccaagctagtgaaggacccagaggttttgtctatagaccaactgaaggaaggccag
atcatcagaggctacgtaaagtctgtgggagagcagggggtcttcatcaggttatctcag
aatataactggaagagcccaacttcagcagtccactaagtactttgttagcaaccacaag
gtcctctctgagcacctgcctcccaacacgctgctcaccacaaagatcttcagtatcgac
agagaggaggggtttgtcaacctctctctgcttcctgtggacaccgggaagccggacatc
cttccagaatctctccgtctgccactgcggctgattggagaggagaagaagaaatatgat
gctgctaagaagaaacgcactctttccgagagcgagcagaaacaagcagagtcccaggtc
ccaaagaaaaagaaaaaaacgaaaaaagcgaagggcgacgataatgacagcggagtggag
gtgtacttccgggaggaggaggatcaggaaggtgaacaagaacccaaacctgatgctgca
aaacccgtgacgtccagctcagcagttccatccagactacaggtggcggcaggtttctcg
tgggacgtgggcctgaactccctgaagccggcttctgcagctcaggatggggactccagt
gacggagaggaccaagatggaagcagcaagccacagaagaagtctcgccatgagctggac
caggagaaaaaggcgacagagaaggcgctggtaaagcgggaagtcgagctcatggatccg
aacctgcgccccgaagacgcagctgcctttgagcgcctgctcctggcctcgcccaacagc
tctctgctgtggctccagtacatggctcaccatctgcaggctacacaaatcgagcaggcc
cgtgctgtggctgagagggctctcaaaactatttccttcagggaggagcaggagaagctg
aatgtgtgggtggcgctgctgaacctggagaacatgtacggcacacaggagaccctgaag
aaggtgtttgagcgggctctgcagttctgtgagcccatgcccgtctaccagcagctggct
gacatctacgccaagtccgacaagaccaaggatgcggagggcttgtacaagacgatggtg
aagcgtttccgtcagaataaggctgtgtggctgagcttcgggtccttcctgctccagcag
ggtcagagtgacgctgccgctgctctcctgcagagggcgctaaaaagccttccttccaaa
gaaagtgtggatgtgatcgccaagtttgctcagctggagttccgttttggtgatgtggag
aaaggtcgcaccatgctggacaaagtcctgaccagttatccgaaacgtaccgatctctgg
tccgtcttcatcgacctgatgatcaaacatggatcccagaaggaagtcagggtgctcttt
gatcgtgtgatccacctgagcgtttcagtgaaaaagatcaagttcttcttcaagcgctac
ctggagtacgaaaagaagcatggcaccccacagagcatccaggcagtcaaagagaaggca
atggagtttgtggaagctaaaggcacagaggctgcaaactaa
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