Hippoglossus hippoglossus (Atlantic halibut): 117771211
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Entry
117771211 CDS
T07778
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117771211 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117771211 (taf5)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117771211 (taf5)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117771211 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
117771211 (taf5)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117771211 (taf5)
STAGA complex
117771211 (taf5)
TFTC complex
117771211 (taf5)
SAGA complex
117771211 (taf5)
SLIK complex
117771211 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
VPS8_N
eIF2A
PROPPIN
CDK5RAP3
LisH_TPL
LisH_PAC1
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
117771211
NCBI-ProteinID:
XP_034457180
LinkDB
All DBs
Position
1:complement(8304866..8309362)
Genome browser
AA seq
748 aa
AA seq
DB search
MAAIQGGVVDADEEKDIKSEPSSDGWGNNNASDGRVLSASPGSSAPAVAIKPAAGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLKGGDSSGAGSGGAAGGGDAEGADASSL
LSRVTVSSSAAAQAPTKATAGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKRFIETVLDC
HRAELSQVFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYEDDLRILSSLTKKEHM
RGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGIPRSKSQ
IDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSMG
SKSKKQDPNAPAQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNAYQ
GLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLNLIDKESDDVLERIMDEK
TASESKILHGHSGPVYGISFSPDRNYLLSSSEDCTIRLWSLLTFTCLVGYKGHNYPVWDT
QFSPHGHYFISGGHDRVARLWATDHYQPLRMFSGHLADITCTRFHPNANYVATGSSDRTI
RLWDVLNGNCVRILTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMFAELKGHT
DTIYSLKFSRDGEILASGSMDNTVRLWDATKAFDDLETDDFTAATGHVHLQENSQELMLG
TYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatacaaggtggtgtggtcgacgcggatgaagaaaaggacattaaatcggaa
ccatcgagcgatggctggggaaacaacaatgcgagcgacgggagggtgctctctgcgtcg
cccggctccagcgctccggccgtggccatcaaaccagcggcgggagccccggaggaccag
cagacgctgctggcggtgctgcagttcctcaggaagaacaaactcaccgagtcggtcgaa
attctgcgtcgcgaagcgggactaccggaggattcactgaaggggggcgactcctccggg
gcaggatcgggaggtgctgccggcggcggggacgcagaaggcgcggatgcgagctctctg
ctgagccgggtgaccgtgtcatcctccgccgcagcacaggcgccaacaaaagccacagca
ggggaggatcagcccgacgtcaacgtggtgctgtcagcgtacagccagcagggagacccg
cctctgtaccaggtttactacagcggcctgaagaggttcatcgagacggtgctggactgt
cacagagcagaactgtcccaggtcttctacccgctgtttgtacacatgtatctggagctg
gtgtacaacaatcatgaaagtgaggccaaggctttctttgacaagtttagtggagaccag
gagtgttattatgaagacgacttgcgcattttgtccagcctaacaaagaaggagcacatg
agaggcaacgagacgctccttgacttccgcaccagcaagttcgtcctgcgcatctcccgc
gactcttaccagctgctgaagagacacctgcaggagcgtcagaacaaccagatctggaat
attatccaagagcacctctacatcgacatctttgatggcattccccgcagcaagagccag
attgatgccatgtccggcagtttggccggagaggctaagcgagaggccaacaaggcgaag
gtttactatggattgctgaaggaaccggaaatagagcttcctcttgatgatgaggatgag
gaggcagagaatgaggagggtaaacccaagaagaagaaaccgaaaaaggacagtatgggc
tcgaagagcaagaagcaggatcctaatgcacctgctcaaactaggataccgttgccagaa
cttaaggactcagacaaactggataagatcatgtacatgaaagaggccaccaagaggatc
cgcctgggaccagataacctcccgtccatctgcttctactcttttctaaatgcatatcag
ggtttgactgcggtggacttcacagatgactccagcctgattgcaggaggctttgctgac
tcaacagtacgggtttggagcgtcacaccgaaaaagctccgcagggtcaagtctgcagca
gacttgaatctgattgacaaagagtcggacgatgtgctggagaggatcatggacgagaag
acggccagtgagtccaagatcctccacggacacagcggcccagtgtatggcatcagcttc
agcccagacagaaactacttgttgtcaagctcagaagactgtacgatcaggctgtggagt
ctcctaacatttacatgtctagtgggctacaagggccacaattacccagtgtgggacact
cagttttctccccatgggcactattttatctccggaggacatgacagagttgcccgtctg
tgggcgacggaccactaccagcctctacggatgttctctggtcatctagctgacatcacc
tgcacccgctttcatcccaacgccaattatgtagctacagggtcgtcggaccgcaccatc
cgcctctgggatgtcctgaacggaaactgcgtccgtatattaactggtcataagggtcct
atccatgcactggctttctctcccaatgggaagttcttagcttctggagccactgatgga
agagttcttctctgggacatcggtcatggactgatgtttgccgagctcaaaggccacaca
gacaccatctattcgctcaagttcagtcgggatggagagatccttgcctctggctctatg
gacaacacggttcgtctgtgggacgcaacgaaagcatttgatgatttagagacggatgac
ttcacagcagccacaggacacgttcatctacaagaaaactcacaggagctcatgctgggc
acctacatgactaaatccacacctgtcatacacctgcacttcacccgcaggaacctgctg
ttggctgctggagcctacaatccatga
DBGET
integrated database retrieval system
