Hippoglossus hippoglossus (Atlantic halibut): 117771300
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Entry
117771300 CDS
T07778
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117771300 (taf1c)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
117771300 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
117771300
NCBI-ProteinID:
XP_034457395
LinkDB
All DBs
Position
12:19676492..19683360
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AA seq
1053 aa
AA seq
DB search
MDQQFPQQLFPSFYNSGPPDSLPEHCAGNWGCYDRVRAEGGSGAVSNWTFTPGHQVRGET
WRHTEPVPVPLLQPKRTFLSHSKPPDPQDFREHMQNFFMDHCQDAFGCMGEILSENFNFE
KRKSETNQNSVNMWMVKNVLASLDFKICHKTYRSRPLSGFGALLSDAVHSVPPELLGSLL
YEELTEQRQRMVFFEGATGGALTFIPFSEGSSSQRGCLLYPGNQGLNQLNFHNVELQHHR
GRSSVLTTGGDPFRFHLKGPIRQISSASLFNNCCVAVRSDHLCGVWRFSEGNDPRLLQVV
NTAEVATCVSASPHVLGEVLVASESGAANLWTVGKGMLKVREEETNLYFNAKSSWRWCEF
SAHPRVMLYADRTGVELTDIRSSPASGHTLFRISNTSECRSGERLILSRYLGDAHSFHHL
ITTQYSAYVMDERFPGVPMLKWDHMMESPPLFCHVLPGSASSGSVVGGDRTTKVVLGSYS
SQEITMLQYSGGRVEACFSRGPPQALHRPRESLKLLPVQIPHRLDTATNRLSSPAAGLTC
VQKKGGEECICVVQLTEAGDLFYQILEPDRPDADTSRPPAAETLPREKEAPTPERKPAEH
LSQDSQLVVADTSSDEEVIGPTQAVPRFVAETPEREQLSDSEDSQMGEKGRLLKQLGLTV
IVNDDPEPDEDPEPRPVGELDRGETDAAGAGKEPSGAEEPLCSPSSSSPVVPPEKTTDVK
LSKDVLVTWKRWLQKLMKKSCGKRPRPHLLHFTNSTDRLLHLPVDGEARDPSEEERVQSL
RRDLRTCMSKRSLLLHETVSASLAAPDSVPLPNVVDTEAWKDELSQRLTLSWQGEDVWRA
WWEDKLGLNKEEKVKALRRKRRREKAVKRASGQRLELSGSFCSSISYQDLGGFSDSGGWS
SAASQGAWSDSEGMMPMSQSECGTPRATTPSTTCETPVPTPTTTPAKDKQGDQRTPSSSC
IRSLSQKPEATSASLRRSRHLSEDALFTPQVRNVLKEESGVRSPRRTPRVDPSREDFVWS
GFSQSLSQGSQTRPGPSQSSQASQKKKKSRMGF
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcagttcccccagcagctgttcccctcgttttataacagcggacctccggac
agtctcccggagcactgcgctggaaactggggctgctacgaccgagtgagagctgagggc
ggctccggtgctgtctccaactggacgtttacaccgggacatcaggtccgaggggagaca
tggcgtcacaccgagccggtaccggttcccctcctgcagcctaaaagaacgttcctgtcg
cattcaaagcctccagatcctcaggacttcagagaacatatgcagaacttcttcatggat
cactgtcaggacgccttcggctgcatgggagaaattctgagcgaaaacttcaactttgaa
aaaagaaagagcgagacaaatcagaactctgtgaacatgtggatggtgaagaatgtcctc
gcttccctggactttaaaatatgtcacaagacgtaccgttcccgaccgctgagcgggttc
ggagcgctgctgtcggacgcggtgcattcggttcctcctgagctgttgggttctctgctg
tacgaggagctgacggagcagagacagcgtatggttttcttcgaaggggccacaggcggc
gctctgaccttcatccccttctctgaggggagcagctctcagcgcggctgccttctctac
ccaggaaaccagggactgaaccaacttaacttccacaatgtggagctgcagcaccacaga
ggacgctcctctgttctgacgactggcggcgacccgttcaggttccatctgaaaggtccg
atcaggcagatcagctccgcctccctcttcaacaactgttgtgttgccgtgcggtccgat
cacctgtgcggagtttggaggttcagcgaaggaaacgatcctcgtctgcttcaggtcgtc
aacaccgcagaggtcgcgacctgcgtcagcgccagtcctcatgttttaggtgaagtcctg
gtggcgagtgagagcggagcagcgaacctgtggactgttggcaaagggatgctgaaggtt
cgggaggaggaaaccaacctctacttcaatgccaagtcgtcgtggcgatggtgcgaattc
tccgcccatcccagggtgatgctgtacgcagacaggacgggggtggagctcacagacatc
aggtcgagtcccgccagtggccacaccctgtttcgcatcagcaacacctcagagtgtcgg
agcggagagagactcatcctgtccagatatctgggagacgcccactccttccaccacctc
atcaccactcagtactcggcctacgtcatggacgagcgcttccccggcgtgcccatgctc
aagtgggatcacatgatggagtccccgccgttgttctgtcacgtcctccctggctccgcc
tcctccggttcggtagtgggcggggatagaaccaccaaggtggtgttgggctcctacagt
tcccaggagatcaccatgctgcagtactcaggcggtcgagtcgaggcctgtttcagtcga
ggtcctcctcaggctctgcacagacccagagagagtctgaagctcctccccgtccagatt
cctcaccgcctggacaccgccaccaacagactgtcctcgcctgctgcaggtctgacttgt
gttcagaagaaaggaggagaggagtgtatctgtgtcgtacagctcacagaggccggagat
cttttctaccagatcctcgagccggatcgtccggacgctgacacgtctcgacctccggcg
gcagagacgctgcctcgagagaaagaagcgccaacaccagagagaaaaccagcagaacat
ctgtcacaggattcacagcttgttgtggcggacacgtcgagtgatgaggaagtgatcgga
cccactcaggctgtgccgaggttcgtggctgaaacgccagagagggagcagctgtctgac
tccgaggattcacagatgggagagaaaggtcgattgctgaagcagttgggcctgaccgtg
atcgttaacgatgatcctgagccggacgaggatcctgagccgcgtcccgtgggtgagttg
gacagaggagagacagacgcagctggagccggtaaagaacccagcggtgcggaggaaccg
ctctgcagccccagcagctcgagtcccgttgttccgcctgagaagacgactgacgtgaag
ctcagcaaagacgttctcgtcacatggaaacgctggctccagaaactgatgaagaagagt
tgtggaaagaggccacgcccacatttgctacatttcacaaacagcactgaccgtcttctc
cacctgcccgtggatggcgaggcgagagatccttcagaggaggagcgtgtgcagagcctg
aggcgagatctgaggacgtgcatgtccaagcgctcgctgctgcttcacgagaccgtgtcc
gcctccctcgccgctccagactctgtaccgctgcccaacgtggtggacacagaggcctgg
aaagatgagctgagccagcgcctcacactctcttggcagggggaggacgtgtggcgggcg
tggtgggaggacaagctggggctaaacaaggaggagaaggtgaaggctctgaggaggaag
aggaggagggagaaggcggtgaagcgagcctccggccaacgcctggagctgtcggggagc
ttctgctcctccatcagctaccaggacctgggcggcttctccgattcaggtggctggtcc
tctgcggcaagccagggggcgtggtcagacagcgaagggatgatgccaatgtcccagtct
gagtgcgggacgccgagagccacgacaccctccaccacgtgtgaaaccccagttcccacg
ccaaccaccacacctgcgaaagataaacaaggtgaccagcggactcccagcagctcctgc
atccggtctctgtcgcagaaaccagaggccacatcggccagtctgaggaggagcagacat
ctgtcagaggacgctctgtttactccacaggtgagaaacgtcctgaaggaggagagcggc
gtgcggtcccctcggaggacgccgcgggtggatccttccagggaggactttgtctggtcg
ggtttctcccagtcgctgtcccagggatcacagactcgaccggggccgtcgcagtcatcg
caggcgtctcagaagaagaagaagtcacggatgggattctga
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