Hippoglossus hippoglossus (Atlantic halibut): 117771328
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Entry
117771328 CDS
T07778
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a
KO
K07603
collagen type XVII alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117771328 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117771328
NCBI-ProteinID:
XP_034457457
LinkDB
All DBs
Position
1:complement(3165925..3192978)
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AA seq
1623 aa
AA seq
DB search
MDKLTTVKTVSYVGGGAGAGSKGDLLVSSGGSGGRAASGGSSGTSSSFVVTSSRSGGSGA
SNGTGGISTTTVGASSAEGSAASGGSGEGFRAAGGGSSGEGFRAAGGGSSGAGFRAAGGG
STGEGFRVAGGGSSGAGFRVAGGGSSSTSSGFIVDGRDGKREGGQGAVSTGTKTSYSSGG
SGEAKKGSSSAINYSPKEKRSMSSMAAALPDVFDESSSTNSSPEYTRKDYGTSKATSSSA
TRGRTQSRESEIRARLQSASPSGCWTELDDVKRLLRGNSTSTSPNNTLPIPKKASVEARS
MSENSSTDVPYGSIWPGGVSSSYSYNTNPNNLSTTSTLYQSAPGLQNNMTLSSPYVSSGL
SASSTAPVYGVQNNLISTSPTHLSPAGANSPIVYGVHKNLSGFGVSPSTVGPRSPSADDA
PGKDFKFVLLEKENAPVKKESERLVATKVTTKQFTSAPTTASTFVTYSDDSLKREKQKLS
ASTALEGADTKSSGLRVATKDKATYAEIGKDESGFGFCSWCSWWKWLLGLLLSLLLLLGL
LFGLIALGEEVKRLKNRVDALEAITGTDPALASRFSASSGTNIIDPLDSAYVDRSSPGFT
LTRTDNYINLGAAGPGGGGAASAPRQDSTALQRTVQQLVRAELQSDAVRETLKGERGEPG
TKGDPGALGQKGDGGFPGLPGPQGQMGHPGLEGPRGPKGSAGEPGPEGPLGPRGREGLMG
PRGETGPSGFGAKGDRGEPGRPGPAGAAGAAGPVGPKGDPGPKGYQGDAGVPGAKADRGS
PGTPGTKGEQGERGSRGSAGEQGPPGQQGPVGPKGTKGITGEAGSMGLSGVRGPPGLPGD
NGPQGTPGIQGPRGIAGNPGQPGAQGAPGSSGKVITPIGSDTVAIPGPPGPAGPAGPAGS
PGLSGPIGPAGVPGQPGSKGTQGETGDRGPKGEQGKAGEPGISVTNSETVSSTRTGPSSV
AGPPGPPGPPGPSGSQGPAGETKQGPPGRKGPPGESGVGYPGPPGERGEPGSFVPTSETF
FAGPPGPPGPKGQAGDRGPQGYQGDPGQPGLPGEPGVGFPGQPGPRGAPGPQGHTGGSVP
SGRDESRPGPADVGQYIAEYLQNGAIREYLAGPPGPPGPPGAPGAQGNTGDGMVDDVANR
VIAYIQSSVRGYDGSVGAPGPSGPPGPPGPPGAQGNTGDGMVDDVANRVIAYIQGSGRGY
DGTPGPPGPPGPPGAVSINDIIDILQREDVRRYVAGPAGPPGPPGGQIFNTQQVAEQVLS
LMNAGYQSNVGPQGPPGPPGVPGLQGPPGQAGPPGPPGLGNHISSDIRDYLQSVAFKGSP
GPPGPPGPEGPPGPMRGLVSYAEHTGRDSITTEQQERFKSQAVRGAMFGLPGMPGPPGPS
GHKGEPGVPGTGAWSLDTADYSSMAVRVTDYIKSHGLLRDVLRDSDRVVQGPPGPPGPPG
IHGQSQWVSSRENVAGLVEYIKSHGVLHDIVSEYNSRIFQGPPGPAGPPGPPGYNRLSGT
YGNATELLEYIKSHGLPRDIERTHNERVIHGRPGPPGPPGPAGYSRLFGSDTNVSDLVEY
IKAHGAIVGNPGRPGPKGEMGFPGIKGDRGGHGPPGRHGPKGLKGDRGDFSLMTKRRKRD
VGI
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggacaagttaactacagtcaagactgtcagctatgttggaggaggagctggagcaggg
agcaaaggtgatcttttagtgagttcgggtggatcaggtggaagagctgcgtcaggaggc
tccagtggcacaagcagctcatttgtggtaacatccagccgctccggtggatcaggagca
agcaacggcaccggaggcatcagcaccactactgtaggagcatcctctgctgagggctct
gcagcctctgggggctccggggaagggttcagggctgctggaggggggtcctccggggaa
gggttcagggctgctggaggggggtcctccggggcagggttcagggctgctggagggggg
tccactggggaagggttcagggttgccggaggggggtcctccggggcagggttcagggtt
gccggagggggatcctccagcacatcctctggttttatcgttgatggcagagatggaaaa
agggaggggggtcaaggtgctgtatctacagggacaaagaccagctacagttcaggtgga
tctggagaagcaaagaaagggtcttcctctgcaatcaattattctccaaaagagaagagg
agcatgagcagcatggcagcagctctccctgatgtgtttgatgaaagttcaagcacaaac
tcttctccagagtacaccaggaaggactacggcacatcaaaagcaacttcaagttctgcc
accagggggagaactcagagcagagagagtgagatcagagccagacttcagagtgcttct
ccctcaggatgttggacggagctggatgatgtgaagcgtctgctgagaggaaactccacc
agcaccagccccaacaacacgctgcccatcccgaagaaggccagtgtggaggcccggagc
atgtcggagaactccagcacagacgtcccctatggcagcatttggcctggaggtgtgagc
agtagctacagttacaacacaaaccccaacaacctgtccactacctccactctttaccag
tcagctccaggacttcagaacaacatgactctcagctctccctatgtgagcagtggcctc
tctgccagcagcacagctccagtgtacggtgttcagaataatctgatcagtaccagcccc
actcatctctcgccagcaggagcaaactctccaatagtttatggtgtgcacaaaaatcta
tccggctttggagtaagcccaagcacagtgggacccagaagtccctctgctgacgacgcc
ccaggaaaggactttaagtttgtgctgttagagaaggagaacgctcccgtcaagaaggag
tcagagaggctggtcgcgaccaaagtcacgacgaagcagttcacgtctgctcctactact
gctagtacttttgtgacctactctgacgattcactgaagagagagaaacagaagttgtca
gccagcacagcattagaaggagcagacactaaatcttcaggcctgagggttgccacaaaa
gacaaagccacatatgcagagatcggaaaagatgaatcgggttttggcttctgctcctgg
tgcagctggtggaagtggctgctgggcctcctgctcagcctgctcctcctcctcggactc
ctctttggactcatcgctttaggtgaagaggtgaaacgcctcaagaaccgcgttgatgcc
ttggaagccatcactggcaccgacccagccctggccagtcgcttctcggcctcctctggc
accaacatcatcgacccactggattcagcatatgtcgacaggagttcccctgggttcacc
ctgacccgcactgataactacatcaacctgggggctgctggaccgggcggaggaggcgca
gcgagcgcaccgagacaggacagcactgcactgcagagaactgttcagcagctggtcagg
gctgagctccaatcggatgctgtacgagaaacacttaaaggagagagaggagagccaggg
accaaaggtgacccaggggcactaggacaaaaaggagatggcggtttccctggtctgcca
ggtcctcaagggcagatgggtcacccaggactggaaggacccaggggacctaagggaagt
gcaggtgaaccaggtcccgagggaccattaggaccgaggggccgtgagggactgatgggc
ccccgcggagagactggcccatctggttttggagcgaaaggagatcgaggtgagccagga
cgccctggtcctgctggtgctgctggtgctgctggacctgtggggccaaagggtgatcct
ggaccaaagggttaccagggtgacgcaggagtgccaggagcaaaggctgacagaggaagt
ccagggacaccaggaaccaaaggagagcagggagagcggggctcacgtggatcagcaggt
gaacaaggaccacctggacaacaaggtcctgttggaccaaaggggactaaggggattaca
ggtgaggcaggttcaatgggactttctggagtcagaggaccacctggacttcctggagat
aatggaccccaaggcaccccagggattcaaggaccacgaggcatcgctggaaacccaggg
caacctggtgctcaaggtgcacccggttcgtctggtaaagtcatcactccgattggctct
gacactgtggccatccctggacctccagggcccgctgggcctgcaggccctgctggatcc
cctggtttgtctggtcccattggccctgctggtgtcccaggacaacctggttctaagggt
acacaaggggagacaggagataggggaccgaagggagagcaaggaaaagctggcgagccg
ggcatcagcgtcacaaattcagaaactgtcagttccacccgaactggaccttcctcagtg
gcaggtccaccaggacccccaggtcctcctggaccgtctggttctcagggtcctgctggt
gagactaaacaaggtcctccaggacgcaaaggtcctccaggagagtcaggtgttggctat
cctggacccccaggagagagaggagaacctggcagctttgtgcctacttcagagaccttc
tttgctggaccaccaggaccccctggtccaaagggccaggctggcgatagaggaccacaa
ggttaccaaggtgacccaggtcaaccaggtctaccaggggaaccaggtgttggtttccca
ggtcagcctggacctaggggggctccgggaccacaaggacatacaggtggttctgtcccg
agtggaagagatgaaagtaggcccggaccagctgatgtgggccagtacatcgcagagtac
cttcagaatggtgccatcagggagtatctggctggacctcctggacctcctgggcctcct
ggtgctccgggagcccaagggaacacaggggacgggatggtggacgatgtggccaatcga
gtcatcgcctacatccagagttcagttagaggatatgatgggtctgttggagcacctgga
ccttccgggcctcctgggcctcctgggcctccgggagcccaagggaacacaggggacggg
atggtggacgatgtggccaaccgagtcatcgcctacatccagggttcaggtagagggtat
gatgggactcctggccctcctggtcctccaggtccacctggcgccgtctctattaatgac
atcatcgatattttacaacgggaggatgtgaggagatatgttgctggtccagccggtcca
ccagggccacctggtggtcagatatttaacacccagcaggtggctgaacaagtgctcagt
ctcatgaatgctgggtatcaatcaaatgtgggccctcaagggcctcctggtcctccaggt
gtccctggtctacaaggaccacctggacaagcaggaccacctggcccaccaggacttggc
aaccacatcagctcagacattcgtgactacctgcaaagtgtcgccttcaaaggctcacca
ggcccccctggtccccctggacctgagggcccccctggtccaatgcgaggactggtctcc
tatgctgagcatactggcagagattcaatcacaacagaacaacaagaacgtttcaagagt
caagcggtgagaggagccatgtttgggcttcctggtatgccaggccctcctggaccctca
ggacacaagggagagccaggtgtgcctggcactggagcctggagcctggatactgctgat
tactccagtatggctgtccgagtaactgattacatcaaatcccacggtctgctccgtgat
gttctgagagactctgaccgtgttgtccaaggacctccaggacctcctggacctccagga
atacatggacaaagccagtgggtcagctcccgtgaaaatgtagcgggtctggtggaatat
atcaaatctcatggtgtgctgcacgatattgtgagcgagtacaacagtcgcatcttccaa
ggacctccaggaccggccggccccccaggtccgccaggatacaacagattgtctggtaca
tatggaaatgccacagaactgctggaatacatcaaatcgcatggcctgccccgtgacatc
gagcgcactcacaatgaacgtgtcatccacggacgacctggaccccctggccctccaggt
cccgcgggttacagccgcttgtttggttccgatacaaacgtctctgatttggtggaatac
atcaaagctcatggagccattgtaggaaatcccgggagaccaggaccgaaaggggagatg
ggattccccggcattaaaggagacagaggtggacatggtcctcctgggcgtcacggaccc
aaaggactaaagggtgacagaggagatttctcactgatgaccaaaagacggaagagggac
gttggcatctga
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